Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS10265

Experiment: Adenine 0.74 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS10260 and A4249_RS10265 are separated by 133 nucleotidesA4249_RS10265 and A4249_RS10270 are separated by 153 nucleotides A4249_RS10260: A4249_RS10260 - LytTR family DNA-binding domain-containing protein, at 2,060,223 to 2,060,987 _RS10260 A4249_RS10265: A4249_RS10265 - hypothetical protein, at 2,061,121 to 2,062,110 _RS10265 A4249_RS10270: A4249_RS10270 - histidine kinase dimerization/phosphoacceptor domain -containing protein, at 2,062,264 to 2,063,559 _RS10270 Position (kb) 2061 2062 2063Strain fitness (log2 ratio) -2 -1 0 1at 2060.153 kb on + strandat 2060.153 kb on + strandat 2060.153 kb on + strandat 2060.153 kb on + strandat 2060.153 kb on + strandat 2060.153 kb on + strandat 2060.153 kb on + strandat 2060.153 kb on + strandat 2060.154 kb on - strandat 2060.154 kb on - strandat 2060.154 kb on - strandat 2060.154 kb on - strandat 2060.224 kb on + strandat 2060.447 kb on + strand, within A4249_RS10260at 2060.448 kb on - strand, within A4249_RS10260at 2060.448 kb on - strand, within A4249_RS10260at 2060.448 kb on - strand, within A4249_RS10260at 2060.448 kb on - strand, within A4249_RS10260at 2060.461 kb on + strand, within A4249_RS10260at 2060.461 kb on + strand, within A4249_RS10260at 2060.461 kb on + strand, within A4249_RS10260at 2060.461 kb on + strand, within A4249_RS10260at 2060.461 kb on + strand, within A4249_RS10260at 2060.461 kb on + strand, within A4249_RS10260at 2060.461 kb on + strand, within A4249_RS10260at 2060.461 kb on + strand, within A4249_RS10260at 2060.461 kb on + strand, within A4249_RS10260at 2060.461 kb on + strand, within A4249_RS10260at 2060.461 kb on + strand, within A4249_RS10260at 2060.461 kb on + strand, within A4249_RS10260at 2060.461 kb on + strand, within A4249_RS10260at 2060.461 kb on + strand, within A4249_RS10260at 2060.461 kb on + strand, within A4249_RS10260at 2060.462 kb on - strand, within A4249_RS10260at 2060.462 kb on - strand, within A4249_RS10260at 2060.462 kb on - strand, within A4249_RS10260at 2060.462 kb on - strand, within A4249_RS10260at 2060.462 kb on - strand, within A4249_RS10260at 2060.462 kb on - strand, within A4249_RS10260at 2060.462 kb on - strand, within A4249_RS10260at 2060.462 kb on - strand, within A4249_RS10260at 2060.587 kb on + strand, within A4249_RS10260at 2060.587 kb on + strand, within A4249_RS10260at 2060.588 kb on - strand, within A4249_RS10260at 2060.588 kb on - strand, within A4249_RS10260at 2060.588 kb on - strand, within A4249_RS10260at 2060.588 kb on - strand, within A4249_RS10260at 2060.599 kb on + strand, within A4249_RS10260at 2060.599 kb on + strand, within A4249_RS10260at 2060.599 kb on + strand, within A4249_RS10260at 2060.599 kb on + strand, within A4249_RS10260at 2060.600 kb on - strand, within A4249_RS10260at 2060.600 kb on - strand, within A4249_RS10260at 2060.600 kb on - strand, within A4249_RS10260at 2060.600 kb on - strand, within A4249_RS10260at 2060.629 kb on + strand, within A4249_RS10260at 2060.706 kb on - strand, within A4249_RS10260at 2060.839 kb on + strand, within A4249_RS10260at 2060.954 kb on + strandat 2060.954 kb on + strandat 2060.954 kb on + strandat 2060.955 kb on - strandat 2060.955 kb on - strandat 2060.955 kb on - strandat 2061.008 kb on + strandat 2061.008 kb on + strandat 2061.472 kb on + strand, within A4249_RS10265at 2061.472 kb on + strand, within A4249_RS10265at 2061.472 kb on + strand, within A4249_RS10265at 2061.472 kb on + strand, within A4249_RS10265at 2061.472 kb on + strand, within A4249_RS10265at 2061.473 kb on - strand, within A4249_RS10265at 2061.538 kb on + strand, within A4249_RS10265at 2061.538 kb on + strand, within A4249_RS10265at 2061.538 kb on + strand, within A4249_RS10265at 2061.538 kb on + strand, within A4249_RS10265at 2061.538 kb on + strand, within A4249_RS10265at 2061.538 kb on + strand, within A4249_RS10265at 2061.538 kb on + strand, within A4249_RS10265at 2061.538 kb on + strand, within A4249_RS10265at 2061.539 kb on - strand, within A4249_RS10265at 2061.539 kb on - strand, within A4249_RS10265at 2061.539 kb on - strand, within A4249_RS10265at 2061.539 kb on - strand, within A4249_RS10265at 2061.539 kb on - strand, within A4249_RS10265at 2061.539 kb on - strand, within A4249_RS10265at 2061.539 kb on - strand, within A4249_RS10265at 2061.540 kb on + strand, within A4249_RS10265at 2061.540 kb on + strand, within A4249_RS10265at 2061.540 kb on + strand, within A4249_RS10265at 2061.540 kb on + strand, within A4249_RS10265at 2061.540 kb on + strand, within A4249_RS10265at 2061.540 kb on + strand, within A4249_RS10265at 2061.540 kb on + strand, within A4249_RS10265at 2061.540 kb on + strand, within A4249_RS10265at 2061.540 kb on + strand, within A4249_RS10265at 2061.540 kb on + strand, within A4249_RS10265at 2061.540 kb on + strand, within A4249_RS10265at 2061.540 kb on + strand, within A4249_RS10265at 2061.540 kb on + strand, within A4249_RS10265at 2061.540 kb on + strand, within A4249_RS10265at 2061.541 kb on - strand, within A4249_RS10265at 2061.541 kb on - strand, within A4249_RS10265at 2061.541 kb on - strand, within A4249_RS10265at 2061.541 kb on - strand, within A4249_RS10265at 2061.541 kb on - strand, within A4249_RS10265at 2061.541 kb on - strand, within A4249_RS10265at 2061.541 kb on - strand, within A4249_RS10265at 2061.541 kb on - strand, within A4249_RS10265at 2061.898 kb on + strand, within A4249_RS10265at 2061.899 kb on - strand, within A4249_RS10265at 2061.899 kb on - strand, within A4249_RS10265at 2061.944 kb on - strand, within A4249_RS10265at 2061.971 kb on - strand, within A4249_RS10265at 2061.971 kb on - strand, within A4249_RS10265at 2062.108 kb on + strandat 2062.108 kb on + strandat 2062.218 kb on + strandat 2062.219 kb on - strandat 2062.228 kb on + strandat 2062.228 kb on + strandat 2062.228 kb on + strandat 2062.228 kb on + strandat 2062.229 kb on - strandat 2062.229 kb on - strandat 2062.229 kb on - strandat 2062.229 kb on - strandat 2062.229 kb on - strandat 2062.229 kb on - strandat 2062.229 kb on - strandat 2062.229 kb on - strandat 2062.229 kb on - strandat 2062.229 kb on - strandat 2062.229 kb on - strandat 2062.229 kb on - strandat 2062.229 kb on - strandat 2062.229 kb on - strandat 2062.230 kb on + strandat 2062.230 kb on + strandat 2062.230 kb on + strandat 2062.230 kb on + strandat 2062.230 kb on + strandat 2062.230 kb on + strandat 2062.230 kb on + strandat 2062.230 kb on + strandat 2062.230 kb on + strandat 2062.230 kb on + strandat 2062.231 kb on - strandat 2062.231 kb on - strandat 2062.231 kb on - strandat 2062.231 kb on - strandat 2062.231 kb on - strandat 2062.231 kb on - strandat 2062.231 kb on - strandat 2062.231 kb on - strandat 2062.231 kb on - strandat 2062.231 kb on - strandat 2062.231 kb on - strandat 2062.685 kb on - strand, within A4249_RS10270at 2062.976 kb on + strand, within A4249_RS10270at 2062.976 kb on + strand, within A4249_RS10270at 2062.977 kb on - strand, within A4249_RS10270

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine 0.74 mM (C)
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2,060,153 + -0.9
2,060,153 + +0.1
2,060,153 + -0.0
2,060,153 + -0.6
2,060,153 + -1.1
2,060,153 + -0.2
2,060,153 + +0.5
2,060,153 + -0.4
2,060,154 - -1.0
2,060,154 - +0.2
2,060,154 - +0.2
2,060,154 - -0.1
2,060,224 + -1.0
2,060,447 + A4249_RS10260 0.29 -0.9
2,060,448 - A4249_RS10260 0.29 -0.0
2,060,448 - A4249_RS10260 0.29 +0.3
2,060,448 - A4249_RS10260 0.29 -0.4
2,060,448 - A4249_RS10260 0.29 +0.0
2,060,461 + A4249_RS10260 0.31 +0.4
2,060,461 + A4249_RS10260 0.31 -2.6
2,060,461 + A4249_RS10260 0.31 -0.5
2,060,461 + A4249_RS10260 0.31 -0.3
2,060,461 + A4249_RS10260 0.31 +0.4
2,060,461 + A4249_RS10260 0.31 -1.1
2,060,461 + A4249_RS10260 0.31 +0.7
2,060,461 + A4249_RS10260 0.31 -0.7
2,060,461 + A4249_RS10260 0.31 -0.3
2,060,461 + A4249_RS10260 0.31 +0.1
2,060,461 + A4249_RS10260 0.31 +0.9
2,060,461 + A4249_RS10260 0.31 -0.1
2,060,461 + A4249_RS10260 0.31 +1.4
2,060,461 + A4249_RS10260 0.31 +0.1
2,060,461 + A4249_RS10260 0.31 -0.4
2,060,462 - A4249_RS10260 0.31 +0.9
2,060,462 - A4249_RS10260 0.31 +0.6
2,060,462 - A4249_RS10260 0.31 -0.3
2,060,462 - A4249_RS10260 0.31 +0.0
2,060,462 - A4249_RS10260 0.31 +0.1
2,060,462 - A4249_RS10260 0.31 +0.8
2,060,462 - A4249_RS10260 0.31 -0.1
2,060,462 - A4249_RS10260 0.31 -0.5
2,060,587 + A4249_RS10260 0.48 -0.2
2,060,587 + A4249_RS10260 0.48 -0.9
2,060,588 - A4249_RS10260 0.48 -0.5
2,060,588 - A4249_RS10260 0.48 +0.2
2,060,588 - A4249_RS10260 0.48 +0.7
2,060,588 - A4249_RS10260 0.48 -1.8
2,060,599 + A4249_RS10260 0.49 -0.3
2,060,599 + A4249_RS10260 0.49 -0.2
2,060,599 + A4249_RS10260 0.49 +0.8
2,060,599 + A4249_RS10260 0.49 -0.1
2,060,600 - A4249_RS10260 0.49 -0.7
2,060,600 - A4249_RS10260 0.49 +0.4
2,060,600 - A4249_RS10260 0.49 -0.5
2,060,600 - A4249_RS10260 0.49 +0.3
2,060,629 + A4249_RS10260 0.53 +0.5
2,060,706 - A4249_RS10260 0.63 +0.6
2,060,839 + A4249_RS10260 0.81 +1.0
2,060,954 + +0.1
2,060,954 + +0.1
2,060,954 + +0.5
2,060,955 - -0.2
2,060,955 - +0.2
2,060,955 - -0.5
2,061,008 + -0.8
2,061,008 + +0.3
2,061,472 + A4249_RS10265 0.35 -0.4
2,061,472 + A4249_RS10265 0.35 -0.1
2,061,472 + A4249_RS10265 0.35 +0.6
2,061,472 + A4249_RS10265 0.35 -1.2
2,061,472 + A4249_RS10265 0.35 -0.2
2,061,473 - A4249_RS10265 0.36 +0.2
2,061,538 + A4249_RS10265 0.42 +1.2
2,061,538 + A4249_RS10265 0.42 +1.1
2,061,538 + A4249_RS10265 0.42 +0.7
2,061,538 + A4249_RS10265 0.42 -0.2
2,061,538 + A4249_RS10265 0.42 +0.2
2,061,538 + A4249_RS10265 0.42 -0.7
2,061,538 + A4249_RS10265 0.42 -0.4
2,061,538 + A4249_RS10265 0.42 -0.5
2,061,539 - A4249_RS10265 0.42 -0.1
2,061,539 - A4249_RS10265 0.42 +0.2
2,061,539 - A4249_RS10265 0.42 -0.0
2,061,539 - A4249_RS10265 0.42 -0.6
2,061,539 - A4249_RS10265 0.42 +0.6
2,061,539 - A4249_RS10265 0.42 +0.8
2,061,539 - A4249_RS10265 0.42 +0.3
2,061,540 + A4249_RS10265 0.42 +0.4
2,061,540 + A4249_RS10265 0.42 +0.1
2,061,540 + A4249_RS10265 0.42 +0.6
2,061,540 + A4249_RS10265 0.42 -0.8
2,061,540 + A4249_RS10265 0.42 -1.0
2,061,540 + A4249_RS10265 0.42 -0.6
2,061,540 + A4249_RS10265 0.42 -1.0
2,061,540 + A4249_RS10265 0.42 +0.9
2,061,540 + A4249_RS10265 0.42 +1.2
2,061,540 + A4249_RS10265 0.42 +1.6
2,061,540 + A4249_RS10265 0.42 +0.3
2,061,540 + A4249_RS10265 0.42 -1.0
2,061,540 + A4249_RS10265 0.42 +0.6
2,061,540 + A4249_RS10265 0.42 -0.5
2,061,541 - A4249_RS10265 0.42 -1.4
2,061,541 - A4249_RS10265 0.42 +0.8
2,061,541 - A4249_RS10265 0.42 +0.3
2,061,541 - A4249_RS10265 0.42 -0.6
2,061,541 - A4249_RS10265 0.42 -0.4
2,061,541 - A4249_RS10265 0.42 -0.4
2,061,541 - A4249_RS10265 0.42 +0.1
2,061,541 - A4249_RS10265 0.42 -0.1
2,061,898 + A4249_RS10265 0.78 +0.7
2,061,899 - A4249_RS10265 0.79 -1.1
2,061,899 - A4249_RS10265 0.79 -0.2
2,061,944 - A4249_RS10265 0.83 -0.9
2,061,971 - A4249_RS10265 0.86 -0.2
2,061,971 - A4249_RS10265 0.86 -0.5
2,062,108 + -1.4
2,062,108 + -0.4
2,062,218 + -0.7
2,062,219 - +0.6
2,062,228 + +0.2
2,062,228 + -0.4
2,062,228 + -0.4
2,062,228 + +0.6
2,062,229 - -0.0
2,062,229 - -0.0
2,062,229 - -0.3
2,062,229 - +0.0
2,062,229 - +0.8
2,062,229 - -0.4
2,062,229 - -0.0
2,062,229 - +0.3
2,062,229 - +1.1
2,062,229 - -0.1
2,062,229 - -0.5
2,062,229 - -0.2
2,062,229 - -0.7
2,062,229 - +1.0
2,062,230 + +0.4
2,062,230 + -0.3
2,062,230 + +0.6
2,062,230 + +0.1
2,062,230 + +0.0
2,062,230 + -0.8
2,062,230 + -1.4
2,062,230 + +0.1
2,062,230 + +0.1
2,062,230 + -1.0
2,062,231 - +0.6
2,062,231 - +0.1
2,062,231 - -1.6
2,062,231 - -0.3
2,062,231 - -0.5
2,062,231 - +0.4
2,062,231 - -0.7
2,062,231 - -0.2
2,062,231 - -0.2
2,062,231 - -0.1
2,062,231 - -1.9
2,062,685 - A4249_RS10270 0.32 +0.2
2,062,976 + A4249_RS10270 0.55 +0.5
2,062,976 + A4249_RS10270 0.55 -0.6
2,062,977 - A4249_RS10270 0.55 +0.3

Or see this region's nucleotide sequence