Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS09790

Experiment: Adenine 0.74 mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntA4249_RS09785 and A4249_RS09790 are separated by 88 nucleotidesA4249_RS09790 and A4249_RS09795 are separated by 16 nucleotidesA4249_RS09795 and A4249_RS09800 overlap by 11 nucleotidesA4249_RS09800 and A4249_RS09805 are separated by 47 nucleotides A4249_RS09785: A4249_RS09785 - flagellar basal-body MS-ring/collar protein FliF, at 1,949,822 to 1,951,462 _RS09785 A4249_RS09790: A4249_RS09790 - alpha/beta hydrolase, at 1,951,551 to 1,952,576 _RS09790 A4249_RS09795: A4249_RS09795 - uracil-DNA glycosylase family protein, at 1,952,593 to 1,953,234 _RS09795 A4249_RS09800: A4249_RS09800 - DUF3253 domain-containing protein, at 1,953,224 to 1,953,526 _RS09800 A4249_RS09805: A4249_RS09805 - PaaI family thioesterase, at 1,953,574 to 1,954,005 _RS09805 Position (kb) 1951 1952 1953Strain fitness (log2 ratio) -2 -1 0 1 2at 1951.015 kb on + strand, within A4249_RS09785at 1951.015 kb on + strand, within A4249_RS09785at 1951.015 kb on + strand, within A4249_RS09785at 1951.015 kb on + strand, within A4249_RS09785at 1951.015 kb on + strand, within A4249_RS09785at 1951.015 kb on + strand, within A4249_RS09785at 1951.016 kb on - strand, within A4249_RS09785at 1951.016 kb on - strand, within A4249_RS09785at 1951.016 kb on - strand, within A4249_RS09785at 1951.198 kb on + strand, within A4249_RS09785at 1951.198 kb on + strand, within A4249_RS09785at 1951.198 kb on + strand, within A4249_RS09785at 1951.260 kb on + strand, within A4249_RS09785at 1951.261 kb on - strand, within A4249_RS09785at 1951.261 kb on - strand, within A4249_RS09785at 1951.326 kb on + strandat 1951.327 kb on - strandat 1951.327 kb on - strandat 1951.541 kb on + strandat 1951.553 kb on - strandat 1951.651 kb on + strandat 1951.651 kb on + strandat 1951.652 kb on - strandat 1951.703 kb on - strand, within A4249_RS09790at 1951.795 kb on + strand, within A4249_RS09790at 1951.795 kb on + strand, within A4249_RS09790at 1951.795 kb on + strand, within A4249_RS09790at 1951.795 kb on + strand, within A4249_RS09790at 1951.796 kb on - strand, within A4249_RS09790at 1951.796 kb on - strand, within A4249_RS09790at 1951.867 kb on + strand, within A4249_RS09790at 1951.867 kb on + strand, within A4249_RS09790at 1951.867 kb on + strand, within A4249_RS09790at 1951.867 kb on + strand, within A4249_RS09790at 1951.868 kb on - strand, within A4249_RS09790at 1951.868 kb on - strand, within A4249_RS09790at 1951.934 kb on + strand, within A4249_RS09790at 1951.934 kb on + strand, within A4249_RS09790at 1951.935 kb on - strand, within A4249_RS09790at 1951.935 kb on - strand, within A4249_RS09790at 1952.141 kb on + strand, within A4249_RS09790at 1952.141 kb on + strand, within A4249_RS09790at 1952.141 kb on + strand, within A4249_RS09790at 1952.141 kb on + strand, within A4249_RS09790at 1952.142 kb on - strand, within A4249_RS09790at 1952.142 kb on - strand, within A4249_RS09790at 1952.142 kb on - strand, within A4249_RS09790at 1952.142 kb on - strand, within A4249_RS09790at 1952.142 kb on - strand, within A4249_RS09790at 1952.281 kb on + strand, within A4249_RS09790at 1952.281 kb on + strand, within A4249_RS09790at 1952.413 kb on + strand, within A4249_RS09790at 1952.413 kb on + strand, within A4249_RS09790at 1952.413 kb on + strand, within A4249_RS09790at 1952.414 kb on - strand, within A4249_RS09790at 1952.414 kb on - strand, within A4249_RS09790at 1952.414 kb on - strand, within A4249_RS09790at 1952.414 kb on - strand, within A4249_RS09790at 1952.414 kb on - strand, within A4249_RS09790at 1952.552 kb on + strandat 1952.552 kb on + strandat 1952.552 kb on + strandat 1952.552 kb on + strandat 1952.552 kb on + strandat 1952.553 kb on - strandat 1952.553 kb on - strandat 1952.553 kb on - strandat 1952.553 kb on - strandat 1952.681 kb on + strand, within A4249_RS09795at 1952.682 kb on - strand, within A4249_RS09795at 1952.682 kb on - strand, within A4249_RS09795at 1952.730 kb on + strand, within A4249_RS09795at 1952.730 kb on + strand, within A4249_RS09795at 1952.731 kb on - strand, within A4249_RS09795at 1952.731 kb on - strand, within A4249_RS09795at 1952.774 kb on + strand, within A4249_RS09795at 1952.774 kb on + strand, within A4249_RS09795at 1952.774 kb on + strand, within A4249_RS09795at 1952.774 kb on + strand, within A4249_RS09795at 1952.775 kb on - strand, within A4249_RS09795at 1952.775 kb on - strand, within A4249_RS09795at 1952.775 kb on - strand, within A4249_RS09795at 1952.847 kb on - strand, within A4249_RS09795at 1952.966 kb on + strand, within A4249_RS09795at 1953.008 kb on + strand, within A4249_RS09795at 1953.008 kb on + strand, within A4249_RS09795at 1953.008 kb on + strand, within A4249_RS09795at 1953.008 kb on + strand, within A4249_RS09795at 1953.009 kb on - strand, within A4249_RS09795at 1953.009 kb on - strand, within A4249_RS09795at 1953.009 kb on - strand, within A4249_RS09795at 1953.009 kb on - strand, within A4249_RS09795at 1953.009 kb on - strand, within A4249_RS09795at 1953.009 kb on - strand, within A4249_RS09795at 1953.020 kb on + strand, within A4249_RS09795at 1953.020 kb on + strand, within A4249_RS09795at 1953.020 kb on + strand, within A4249_RS09795at 1953.020 kb on + strand, within A4249_RS09795at 1953.020 kb on + strand, within A4249_RS09795at 1953.020 kb on + strand, within A4249_RS09795at 1953.021 kb on - strand, within A4249_RS09795at 1953.021 kb on - strand, within A4249_RS09795at 1953.021 kb on - strand, within A4249_RS09795at 1953.117 kb on + strand, within A4249_RS09795at 1953.117 kb on + strand, within A4249_RS09795at 1953.117 kb on + strand, within A4249_RS09795at 1953.117 kb on + strand, within A4249_RS09795at 1953.117 kb on + strand, within A4249_RS09795at 1953.118 kb on - strand, within A4249_RS09795at 1953.118 kb on - strand, within A4249_RS09795at 1953.118 kb on - strand, within A4249_RS09795at 1953.118 kb on - strand, within A4249_RS09795at 1953.118 kb on - strand, within A4249_RS09795at 1953.213 kb on + strandat 1953.214 kb on - strandat 1953.434 kb on + strand, within A4249_RS09800at 1953.434 kb on + strand, within A4249_RS09800at 1953.434 kb on + strand, within A4249_RS09800at 1953.434 kb on + strand, within A4249_RS09800at 1953.434 kb on + strand, within A4249_RS09800at 1953.434 kb on + strand, within A4249_RS09800at 1953.435 kb on - strand, within A4249_RS09800at 1953.435 kb on - strand, within A4249_RS09800at 1953.435 kb on - strand, within A4249_RS09800at 1953.435 kb on - strand, within A4249_RS09800at 1953.533 kb on + strandat 1953.533 kb on + strandat 1953.533 kb on + strandat 1953.533 kb on + strandat 1953.533 kb on + strandat 1953.533 kb on + strandat 1953.534 kb on - strandat 1953.534 kb on - strandat 1953.534 kb on - strandat 1953.534 kb on - strandat 1953.535 kb on + strandat 1953.535 kb on + strandat 1953.535 kb on + strandat 1953.535 kb on + strandat 1953.535 kb on + strandat 1953.535 kb on + strandat 1953.535 kb on + strandat 1953.535 kb on + strandat 1953.536 kb on - strandat 1953.536 kb on - strandat 1953.536 kb on - strandat 1953.536 kb on - strandat 1953.536 kb on - strandat 1953.536 kb on - strandat 1953.536 kb on - strandat 1953.536 kb on - strandat 1953.555 kb on + strandat 1953.555 kb on + strandat 1953.555 kb on + strandat 1953.556 kb on - strandat 1953.556 kb on - strandat 1953.556 kb on - strandat 1953.559 kb on + strandat 1953.559 kb on + strandat 1953.559 kb on + strandat 1953.559 kb on + strandat 1953.560 kb on - strandat 1953.560 kb on - strandat 1953.560 kb on - strandat 1953.560 kb on - strandat 1953.560 kb on - strandat 1953.560 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Adenine 0.74 mM (C)
remove
1,951,015 + A4249_RS09785 0.73 +0.7
1,951,015 + A4249_RS09785 0.73 -0.7
1,951,015 + A4249_RS09785 0.73 -0.2
1,951,015 + A4249_RS09785 0.73 -0.9
1,951,015 + A4249_RS09785 0.73 +0.3
1,951,015 + A4249_RS09785 0.73 +1.4
1,951,016 - A4249_RS09785 0.73 -0.9
1,951,016 - A4249_RS09785 0.73 -0.6
1,951,016 - A4249_RS09785 0.73 -0.2
1,951,198 + A4249_RS09785 0.84 -0.3
1,951,198 + A4249_RS09785 0.84 -0.1
1,951,198 + A4249_RS09785 0.84 +0.1
1,951,260 + A4249_RS09785 0.88 -2.5
1,951,261 - A4249_RS09785 0.88 +0.1
1,951,261 - A4249_RS09785 0.88 -1.2
1,951,326 + -0.5
1,951,327 - +2.1
1,951,327 - +0.8
1,951,541 + -0.3
1,951,553 - +0.3
1,951,651 + -0.1
1,951,651 + -0.6
1,951,652 - -0.5
1,951,703 - A4249_RS09790 0.15 -0.1
1,951,795 + A4249_RS09790 0.24 +0.4
1,951,795 + A4249_RS09790 0.24 +0.4
1,951,795 + A4249_RS09790 0.24 +0.1
1,951,795 + A4249_RS09790 0.24 -0.8
1,951,796 - A4249_RS09790 0.24 -1.3
1,951,796 - A4249_RS09790 0.24 -0.1
1,951,867 + A4249_RS09790 0.31 -0.0
1,951,867 + A4249_RS09790 0.31 +0.3
1,951,867 + A4249_RS09790 0.31 +0.6
1,951,867 + A4249_RS09790 0.31 +0.1
1,951,868 - A4249_RS09790 0.31 +0.4
1,951,868 - A4249_RS09790 0.31 +0.2
1,951,934 + A4249_RS09790 0.37 -0.6
1,951,934 + A4249_RS09790 0.37 -0.5
1,951,935 - A4249_RS09790 0.37 -0.1
1,951,935 - A4249_RS09790 0.37 +0.2
1,952,141 + A4249_RS09790 0.58 -1.0
1,952,141 + A4249_RS09790 0.58 -0.4
1,952,141 + A4249_RS09790 0.58 +0.7
1,952,141 + A4249_RS09790 0.58 -0.2
1,952,142 - A4249_RS09790 0.58 +0.2
1,952,142 - A4249_RS09790 0.58 +0.6
1,952,142 - A4249_RS09790 0.58 +0.5
1,952,142 - A4249_RS09790 0.58 +0.1
1,952,142 - A4249_RS09790 0.58 -0.3
1,952,281 + A4249_RS09790 0.71 +0.1
1,952,281 + A4249_RS09790 0.71 +1.0
1,952,413 + A4249_RS09790 0.84 +0.0
1,952,413 + A4249_RS09790 0.84 +0.3
1,952,413 + A4249_RS09790 0.84 -0.7
1,952,414 - A4249_RS09790 0.84 -0.8
1,952,414 - A4249_RS09790 0.84 -1.5
1,952,414 - A4249_RS09790 0.84 -0.1
1,952,414 - A4249_RS09790 0.84 -2.5
1,952,414 - A4249_RS09790 0.84 -0.3
1,952,552 + +0.8
1,952,552 + +0.3
1,952,552 + +0.2
1,952,552 + +0.1
1,952,552 + -0.1
1,952,553 - +0.0
1,952,553 - -0.2
1,952,553 - +0.0
1,952,553 - -0.4
1,952,681 + A4249_RS09795 0.14 -0.8
1,952,682 - A4249_RS09795 0.14 -0.2
1,952,682 - A4249_RS09795 0.14 +0.5
1,952,730 + A4249_RS09795 0.21 +0.6
1,952,730 + A4249_RS09795 0.21 +0.8
1,952,731 - A4249_RS09795 0.21 -0.7
1,952,731 - A4249_RS09795 0.21 -0.2
1,952,774 + A4249_RS09795 0.28 -0.8
1,952,774 + A4249_RS09795 0.28 +0.1
1,952,774 + A4249_RS09795 0.28 -0.2
1,952,774 + A4249_RS09795 0.28 +0.1
1,952,775 - A4249_RS09795 0.28 -0.1
1,952,775 - A4249_RS09795 0.28 -0.1
1,952,775 - A4249_RS09795 0.28 -0.1
1,952,847 - A4249_RS09795 0.40 -0.1
1,952,966 + A4249_RS09795 0.58 +1.0
1,953,008 + A4249_RS09795 0.65 +0.6
1,953,008 + A4249_RS09795 0.65 -0.7
1,953,008 + A4249_RS09795 0.65 -0.1
1,953,008 + A4249_RS09795 0.65 +0.4
1,953,009 - A4249_RS09795 0.65 +0.6
1,953,009 - A4249_RS09795 0.65 -0.1
1,953,009 - A4249_RS09795 0.65 -0.3
1,953,009 - A4249_RS09795 0.65 -0.7
1,953,009 - A4249_RS09795 0.65 +0.3
1,953,009 - A4249_RS09795 0.65 +0.9
1,953,020 + A4249_RS09795 0.67 +0.0
1,953,020 + A4249_RS09795 0.67 +0.3
1,953,020 + A4249_RS09795 0.67 -0.4
1,953,020 + A4249_RS09795 0.67 +0.3
1,953,020 + A4249_RS09795 0.67 +0.1
1,953,020 + A4249_RS09795 0.67 -0.3
1,953,021 - A4249_RS09795 0.67 +0.2
1,953,021 - A4249_RS09795 0.67 +0.5
1,953,021 - A4249_RS09795 0.67 +0.0
1,953,117 + A4249_RS09795 0.82 +0.6
1,953,117 + A4249_RS09795 0.82 +0.2
1,953,117 + A4249_RS09795 0.82 +0.3
1,953,117 + A4249_RS09795 0.82 -0.2
1,953,117 + A4249_RS09795 0.82 -0.5
1,953,118 - A4249_RS09795 0.82 +0.0
1,953,118 - A4249_RS09795 0.82 -0.5
1,953,118 - A4249_RS09795 0.82 +0.4
1,953,118 - A4249_RS09795 0.82 -0.8
1,953,118 - A4249_RS09795 0.82 -0.3
1,953,213 + +0.1
1,953,214 - -1.0
1,953,434 + A4249_RS09800 0.69 -0.7
1,953,434 + A4249_RS09800 0.69 -0.2
1,953,434 + A4249_RS09800 0.69 -0.1
1,953,434 + A4249_RS09800 0.69 -1.7
1,953,434 + A4249_RS09800 0.69 +0.4
1,953,434 + A4249_RS09800 0.69 +2.0
1,953,435 - A4249_RS09800 0.70 +0.8
1,953,435 - A4249_RS09800 0.70 +0.7
1,953,435 - A4249_RS09800 0.70 -0.1
1,953,435 - A4249_RS09800 0.70 +1.0
1,953,533 + +1.9
1,953,533 + +1.4
1,953,533 + -0.2
1,953,533 + -0.1
1,953,533 + +1.8
1,953,533 + -0.1
1,953,534 - -0.9
1,953,534 - -0.3
1,953,534 - -0.1
1,953,534 - +0.9
1,953,535 + +0.4
1,953,535 + -0.7
1,953,535 + -0.4
1,953,535 + -0.1
1,953,535 + +0.6
1,953,535 + +0.0
1,953,535 + +0.2
1,953,535 + -0.0
1,953,536 - -0.4
1,953,536 - -0.4
1,953,536 - +0.7
1,953,536 - -1.0
1,953,536 - -0.4
1,953,536 - -0.1
1,953,536 - -1.0
1,953,536 - +0.1
1,953,555 + -0.3
1,953,555 + -1.0
1,953,555 + -0.3
1,953,556 - -0.7
1,953,556 - -0.4
1,953,556 - +0.3
1,953,559 + +0.0
1,953,559 + -1.1
1,953,559 + -0.7
1,953,559 + +1.7
1,953,560 - +0.6
1,953,560 - -0.3
1,953,560 - -0.4
1,953,560 - +0.0
1,953,560 - -0.1
1,953,560 - -0.9

Or see this region's nucleotide sequence