Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS09615

Experiment: Adenine 0.74 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS09610 and A4249_RS09615 are separated by 2 nucleotidesA4249_RS09615 and A4249_RS09620 are separated by 180 nucleotidesA4249_RS09620 and A4249_RS09625 are separated by 14 nucleotides A4249_RS09610: A4249_RS09610 - flagellar motor switch protein FliM, at 1,917,311 to 1,918,354 _RS09610 A4249_RS09615: A4249_RS09615 - flagellar basal body-associated FliL family protein, at 1,918,357 to 1,919,028 _RS09615 A4249_RS09620: A4249_RS09620 - flagellar basal-body rod protein FlgF, at 1,919,209 to 1,919,949 _RS09620 A4249_RS09625: A4249_RS09625 - flagellar basal-body rod protein FlgG, at 1,919,964 to 1,920,752 _RS09625 Position (kb) 1918 1919 1920Strain fitness (log2 ratio) -2 -1 0 1at 1917.369 kb on - strandat 1917.369 kb on - strandat 1917.369 kb on - strandat 1917.658 kb on - strand, within A4249_RS09610at 1917.879 kb on + strand, within A4249_RS09610at 1917.879 kb on + strand, within A4249_RS09610at 1917.879 kb on + strand, within A4249_RS09610at 1917.879 kb on + strand, within A4249_RS09610at 1917.880 kb on - strand, within A4249_RS09610at 1917.948 kb on + strand, within A4249_RS09610at 1917.949 kb on - strand, within A4249_RS09610at 1917.949 kb on - strand, within A4249_RS09610at 1917.949 kb on - strand, within A4249_RS09610at 1917.981 kb on + strand, within A4249_RS09610at 1917.981 kb on + strand, within A4249_RS09610at 1917.982 kb on - strand, within A4249_RS09610at 1917.982 kb on - strand, within A4249_RS09610at 1917.982 kb on - strand, within A4249_RS09610at 1917.982 kb on - strand, within A4249_RS09610at 1917.982 kb on - strand, within A4249_RS09610at 1917.982 kb on - strand, within A4249_RS09610at 1917.982 kb on - strand, within A4249_RS09610at 1917.982 kb on - strand, within A4249_RS09610at 1917.982 kb on - strand, within A4249_RS09610at 1918.045 kb on - strand, within A4249_RS09610at 1918.069 kb on + strand, within A4249_RS09610at 1918.069 kb on + strand, within A4249_RS09610at 1918.069 kb on + strand, within A4249_RS09610at 1918.069 kb on + strand, within A4249_RS09610at 1918.069 kb on + strand, within A4249_RS09610at 1918.070 kb on - strand, within A4249_RS09610at 1918.070 kb on - strand, within A4249_RS09610at 1918.070 kb on - strand, within A4249_RS09610at 1918.070 kb on - strand, within A4249_RS09610at 1918.070 kb on - strand, within A4249_RS09610at 1918.070 kb on - strand, within A4249_RS09610at 1918.070 kb on - strand, within A4249_RS09610at 1918.070 kb on - strand, within A4249_RS09610at 1918.070 kb on - strand, within A4249_RS09610at 1918.076 kb on + strand, within A4249_RS09610at 1918.076 kb on + strand, within A4249_RS09610at 1918.176 kb on + strand, within A4249_RS09610at 1918.176 kb on + strand, within A4249_RS09610at 1918.176 kb on + strand, within A4249_RS09610at 1918.177 kb on - strand, within A4249_RS09610at 1918.208 kb on + strand, within A4249_RS09610at 1918.209 kb on - strand, within A4249_RS09610at 1918.209 kb on - strand, within A4249_RS09610at 1918.209 kb on - strand, within A4249_RS09610at 1918.261 kb on + strandat 1918.358 kb on + strandat 1918.358 kb on + strandat 1918.358 kb on + strandat 1918.358 kb on + strandat 1918.358 kb on + strandat 1918.358 kb on + strandat 1918.358 kb on + strandat 1918.358 kb on + strandat 1918.358 kb on + strandat 1918.359 kb on - strandat 1918.359 kb on - strandat 1918.451 kb on + strand, within A4249_RS09615at 1918.451 kb on + strand, within A4249_RS09615at 1918.451 kb on + strand, within A4249_RS09615at 1918.451 kb on + strand, within A4249_RS09615at 1918.451 kb on + strand, within A4249_RS09615at 1918.451 kb on + strand, within A4249_RS09615at 1918.452 kb on - strand, within A4249_RS09615at 1918.452 kb on - strand, within A4249_RS09615at 1918.649 kb on + strand, within A4249_RS09615at 1918.649 kb on + strand, within A4249_RS09615at 1918.649 kb on + strand, within A4249_RS09615at 1918.649 kb on + strand, within A4249_RS09615at 1918.650 kb on - strand, within A4249_RS09615at 1918.650 kb on - strand, within A4249_RS09615at 1918.650 kb on - strand, within A4249_RS09615at 1918.650 kb on - strand, within A4249_RS09615at 1918.650 kb on - strand, within A4249_RS09615at 1918.650 kb on - strand, within A4249_RS09615at 1919.155 kb on + strandat 1919.155 kb on + strandat 1919.156 kb on - strandat 1919.156 kb on - strandat 1919.224 kb on + strandat 1919.224 kb on + strandat 1919.224 kb on + strandat 1919.225 kb on - strandat 1919.225 kb on - strandat 1919.225 kb on - strandat 1919.225 kb on - strandat 1919.225 kb on - strandat 1919.225 kb on - strandat 1919.225 kb on - strandat 1919.225 kb on - strandat 1919.225 kb on - strandat 1919.225 kb on - strandat 1919.227 kb on - strandat 1919.518 kb on + strand, within A4249_RS09620at 1919.518 kb on + strand, within A4249_RS09620at 1919.519 kb on - strand, within A4249_RS09620at 1919.519 kb on - strand, within A4249_RS09620at 1919.519 kb on - strand, within A4249_RS09620at 1919.519 kb on - strand, within A4249_RS09620at 1919.869 kb on + strand, within A4249_RS09620at 1919.947 kb on + strandat 1919.948 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine 0.74 mM (C)
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1,917,369 - -0.7
1,917,369 - -0.8
1,917,369 - -0.2
1,917,658 - A4249_RS09610 0.33 -0.9
1,917,879 + A4249_RS09610 0.54 -2.0
1,917,879 + A4249_RS09610 0.54 +0.3
1,917,879 + A4249_RS09610 0.54 +0.6
1,917,879 + A4249_RS09610 0.54 +0.7
1,917,880 - A4249_RS09610 0.55 -0.4
1,917,948 + A4249_RS09610 0.61 +0.4
1,917,949 - A4249_RS09610 0.61 +0.9
1,917,949 - A4249_RS09610 0.61 +0.1
1,917,949 - A4249_RS09610 0.61 +0.2
1,917,981 + A4249_RS09610 0.64 -0.7
1,917,981 + A4249_RS09610 0.64 +0.1
1,917,982 - A4249_RS09610 0.64 +1.6
1,917,982 - A4249_RS09610 0.64 +0.3
1,917,982 - A4249_RS09610 0.64 +1.1
1,917,982 - A4249_RS09610 0.64 +0.4
1,917,982 - A4249_RS09610 0.64 -1.4
1,917,982 - A4249_RS09610 0.64 +0.6
1,917,982 - A4249_RS09610 0.64 +0.1
1,917,982 - A4249_RS09610 0.64 +0.3
1,917,982 - A4249_RS09610 0.64 -0.5
1,918,045 - A4249_RS09610 0.70 -0.4
1,918,069 + A4249_RS09610 0.73 +0.1
1,918,069 + A4249_RS09610 0.73 +0.0
1,918,069 + A4249_RS09610 0.73 +1.4
1,918,069 + A4249_RS09610 0.73 -0.7
1,918,069 + A4249_RS09610 0.73 +0.1
1,918,070 - A4249_RS09610 0.73 +0.1
1,918,070 - A4249_RS09610 0.73 +0.6
1,918,070 - A4249_RS09610 0.73 +0.7
1,918,070 - A4249_RS09610 0.73 -1.1
1,918,070 - A4249_RS09610 0.73 -0.2
1,918,070 - A4249_RS09610 0.73 +0.1
1,918,070 - A4249_RS09610 0.73 -0.4
1,918,070 - A4249_RS09610 0.73 +0.9
1,918,070 - A4249_RS09610 0.73 +0.8
1,918,076 + A4249_RS09610 0.73 +0.0
1,918,076 + A4249_RS09610 0.73 -0.3
1,918,176 + A4249_RS09610 0.83 -0.8
1,918,176 + A4249_RS09610 0.83 +0.0
1,918,176 + A4249_RS09610 0.83 -0.0
1,918,177 - A4249_RS09610 0.83 +1.0
1,918,208 + A4249_RS09610 0.86 -0.4
1,918,209 - A4249_RS09610 0.86 -0.2
1,918,209 - A4249_RS09610 0.86 -0.3
1,918,209 - A4249_RS09610 0.86 +0.1
1,918,261 + -1.7
1,918,358 + +0.9
1,918,358 + +0.0
1,918,358 + +0.3
1,918,358 + -0.4
1,918,358 + +0.1
1,918,358 + -1.9
1,918,358 + -0.7
1,918,358 + -1.3
1,918,358 + -0.2
1,918,359 - +0.0
1,918,359 - +0.1
1,918,451 + A4249_RS09615 0.14 +0.5
1,918,451 + A4249_RS09615 0.14 -0.1
1,918,451 + A4249_RS09615 0.14 -0.1
1,918,451 + A4249_RS09615 0.14 -0.3
1,918,451 + A4249_RS09615 0.14 +0.1
1,918,451 + A4249_RS09615 0.14 +0.1
1,918,452 - A4249_RS09615 0.14 -0.3
1,918,452 - A4249_RS09615 0.14 -0.1
1,918,649 + A4249_RS09615 0.43 +0.7
1,918,649 + A4249_RS09615 0.43 -1.0
1,918,649 + A4249_RS09615 0.43 +0.9
1,918,649 + A4249_RS09615 0.43 -0.0
1,918,650 - A4249_RS09615 0.44 +1.1
1,918,650 - A4249_RS09615 0.44 +0.3
1,918,650 - A4249_RS09615 0.44 +0.6
1,918,650 - A4249_RS09615 0.44 +0.4
1,918,650 - A4249_RS09615 0.44 +0.1
1,918,650 - A4249_RS09615 0.44 +0.4
1,919,155 + +0.5
1,919,155 + +0.2
1,919,156 - -0.1
1,919,156 - -0.8
1,919,224 + -0.2
1,919,224 + -0.6
1,919,224 + +0.7
1,919,225 - -0.7
1,919,225 - +0.7
1,919,225 - +0.2
1,919,225 - -1.0
1,919,225 - -1.0
1,919,225 - -0.8
1,919,225 - +1.0
1,919,225 - +0.1
1,919,225 - -1.3
1,919,225 - -0.3
1,919,227 - -0.1
1,919,518 + A4249_RS09620 0.42 -1.8
1,919,518 + A4249_RS09620 0.42 +0.3
1,919,519 - A4249_RS09620 0.42 -0.5
1,919,519 - A4249_RS09620 0.42 -0.5
1,919,519 - A4249_RS09620 0.42 -0.3
1,919,519 - A4249_RS09620 0.42 +0.4
1,919,869 + A4249_RS09620 0.89 +1.7
1,919,947 + -0.5
1,919,948 - +0.6

Or see this region's nucleotide sequence