Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS09485

Experiment: Adenine 0.74 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS09475 and A4249_RS09480 are separated by 86 nucleotidesA4249_RS09480 and A4249_RS09485 overlap by 4 nucleotidesA4249_RS09485 and A4249_RS09490 are separated by 67 nucleotides A4249_RS09475: A4249_RS09475 - glycosyltransferase family 9 protein, at 1,893,477 to 1,894,442 _RS09475 A4249_RS09480: A4249_RS09480 - hypothetical protein, at 1,894,529 to 1,894,759 _RS09480 A4249_RS09485: A4249_RS09485 - hypothetical protein, at 1,894,756 to 1,895,322 _RS09485 A4249_RS09490: A4249_RS09490 - response regulator, at 1,895,390 to 1,896,778 _RS09490 Position (kb) 1894 1895 1896Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1893.919 kb on + strand, within A4249_RS09475at 1894.042 kb on + strand, within A4249_RS09475at 1894.042 kb on + strand, within A4249_RS09475at 1894.042 kb on + strand, within A4249_RS09475at 1894.042 kb on + strand, within A4249_RS09475at 1894.042 kb on + strand, within A4249_RS09475at 1894.042 kb on + strand, within A4249_RS09475at 1894.042 kb on + strand, within A4249_RS09475at 1894.042 kb on + strand, within A4249_RS09475at 1894.042 kb on + strand, within A4249_RS09475at 1894.042 kb on + strand, within A4249_RS09475at 1894.042 kb on + strand, within A4249_RS09475at 1894.042 kb on + strand, within A4249_RS09475at 1894.042 kb on + strand, within A4249_RS09475at 1894.042 kb on + strand, within A4249_RS09475at 1894.042 kb on + strand, within A4249_RS09475at 1894.043 kb on - strand, within A4249_RS09475at 1894.043 kb on - strand, within A4249_RS09475at 1894.043 kb on - strand, within A4249_RS09475at 1894.043 kb on - strand, within A4249_RS09475at 1894.043 kb on - strand, within A4249_RS09475at 1894.043 kb on - strand, within A4249_RS09475at 1894.043 kb on - strand, within A4249_RS09475at 1894.043 kb on - strand, within A4249_RS09475at 1894.289 kb on + strand, within A4249_RS09475at 1894.417 kb on + strandat 1894.417 kb on + strandat 1894.417 kb on + strandat 1894.417 kb on + strandat 1894.417 kb on + strandat 1894.417 kb on + strandat 1894.417 kb on + strandat 1894.417 kb on + strandat 1894.418 kb on - strandat 1894.418 kb on - strandat 1894.418 kb on - strandat 1894.455 kb on - strandat 1894.455 kb on - strandat 1894.465 kb on + strandat 1894.465 kb on + strandat 1894.465 kb on + strandat 1894.466 kb on - strandat 1894.466 kb on - strandat 1894.516 kb on + strandat 1894.516 kb on + strandat 1894.516 kb on + strandat 1894.613 kb on + strand, within A4249_RS09480at 1894.614 kb on - strand, within A4249_RS09480at 1894.614 kb on - strand, within A4249_RS09480at 1894.614 kb on - strand, within A4249_RS09480at 1894.614 kb on - strand, within A4249_RS09480at 1894.652 kb on + strand, within A4249_RS09480at 1894.653 kb on - strand, within A4249_RS09480at 1894.867 kb on + strand, within A4249_RS09485at 1894.867 kb on + strand, within A4249_RS09485at 1894.868 kb on - strand, within A4249_RS09485at 1894.868 kb on - strand, within A4249_RS09485at 1894.868 kb on - strand, within A4249_RS09485at 1894.923 kb on + strand, within A4249_RS09485at 1894.923 kb on + strand, within A4249_RS09485at 1894.923 kb on + strand, within A4249_RS09485at 1894.924 kb on - strand, within A4249_RS09485at 1894.924 kb on - strand, within A4249_RS09485at 1894.988 kb on + strand, within A4249_RS09485at 1895.032 kb on + strand, within A4249_RS09485at 1895.032 kb on + strand, within A4249_RS09485at 1895.032 kb on + strand, within A4249_RS09485at 1895.032 kb on + strand, within A4249_RS09485at 1895.032 kb on + strand, within A4249_RS09485at 1895.032 kb on + strand, within A4249_RS09485at 1895.032 kb on + strand, within A4249_RS09485at 1895.032 kb on + strand, within A4249_RS09485at 1895.033 kb on - strand, within A4249_RS09485at 1895.033 kb on - strand, within A4249_RS09485at 1895.033 kb on - strand, within A4249_RS09485at 1895.033 kb on - strand, within A4249_RS09485at 1895.033 kb on - strand, within A4249_RS09485at 1895.146 kb on + strand, within A4249_RS09485at 1895.146 kb on + strand, within A4249_RS09485at 1895.147 kb on - strand, within A4249_RS09485at 1895.147 kb on - strand, within A4249_RS09485at 1895.147 kb on - strand, within A4249_RS09485at 1895.147 kb on - strand, within A4249_RS09485at 1895.287 kb on + strandat 1895.331 kb on + strandat 1895.456 kb on + strandat 1895.457 kb on - strandat 1895.457 kb on - strandat 1895.457 kb on - strandat 1895.457 kb on - strandat 1895.457 kb on - strandat 1895.457 kb on - strandat 1895.457 kb on - strandat 1895.457 kb on - strandat 1895.457 kb on - strandat 1895.615 kb on + strand, within A4249_RS09490at 1895.660 kb on + strand, within A4249_RS09490at 1895.660 kb on + strand, within A4249_RS09490at 1895.660 kb on + strand, within A4249_RS09490at 1895.660 kb on + strand, within A4249_RS09490at 1895.661 kb on - strand, within A4249_RS09490at 1895.828 kb on + strand, within A4249_RS09490at 1896.268 kb on + strand, within A4249_RS09490at 1896.268 kb on + strand, within A4249_RS09490at 1896.268 kb on + strand, within A4249_RS09490at 1896.269 kb on - strand, within A4249_RS09490at 1896.269 kb on - strand, within A4249_RS09490

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine 0.74 mM (C)
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1,893,919 + A4249_RS09475 0.46 -0.1
1,894,042 + A4249_RS09475 0.58 -0.2
1,894,042 + A4249_RS09475 0.58 -0.1
1,894,042 + A4249_RS09475 0.58 +0.4
1,894,042 + A4249_RS09475 0.58 +1.4
1,894,042 + A4249_RS09475 0.58 +0.3
1,894,042 + A4249_RS09475 0.58 +0.0
1,894,042 + A4249_RS09475 0.58 -0.6
1,894,042 + A4249_RS09475 0.58 -0.1
1,894,042 + A4249_RS09475 0.58 -0.5
1,894,042 + A4249_RS09475 0.58 +0.5
1,894,042 + A4249_RS09475 0.58 -0.4
1,894,042 + A4249_RS09475 0.58 +0.6
1,894,042 + A4249_RS09475 0.58 +0.0
1,894,042 + A4249_RS09475 0.58 +1.2
1,894,042 + A4249_RS09475 0.58 +0.8
1,894,043 - A4249_RS09475 0.59 -0.1
1,894,043 - A4249_RS09475 0.59 +0.7
1,894,043 - A4249_RS09475 0.59 +0.6
1,894,043 - A4249_RS09475 0.59 +0.3
1,894,043 - A4249_RS09475 0.59 -0.0
1,894,043 - A4249_RS09475 0.59 +0.0
1,894,043 - A4249_RS09475 0.59 +0.5
1,894,043 - A4249_RS09475 0.59 -2.2
1,894,289 + A4249_RS09475 0.84 -0.7
1,894,417 + -0.4
1,894,417 + -0.4
1,894,417 + -0.2
1,894,417 + -0.1
1,894,417 + +0.3
1,894,417 + +1.4
1,894,417 + +1.0
1,894,417 + -0.4
1,894,418 - -0.1
1,894,418 - +0.4
1,894,418 - +1.4
1,894,455 - -0.0
1,894,455 - -1.3
1,894,465 + -0.4
1,894,465 + +0.2
1,894,465 + +0.3
1,894,466 - +0.3
1,894,466 - +0.0
1,894,516 + +0.4
1,894,516 + +0.6
1,894,516 + -0.6
1,894,613 + A4249_RS09480 0.36 -0.3
1,894,614 - A4249_RS09480 0.37 +0.0
1,894,614 - A4249_RS09480 0.37 -0.2
1,894,614 - A4249_RS09480 0.37 -1.1
1,894,614 - A4249_RS09480 0.37 +0.8
1,894,652 + A4249_RS09480 0.53 -0.2
1,894,653 - A4249_RS09480 0.54 +3.1
1,894,867 + A4249_RS09485 0.20 -1.2
1,894,867 + A4249_RS09485 0.20 -0.3
1,894,868 - A4249_RS09485 0.20 +0.1
1,894,868 - A4249_RS09485 0.20 -0.9
1,894,868 - A4249_RS09485 0.20 +0.0
1,894,923 + A4249_RS09485 0.29 -1.1
1,894,923 + A4249_RS09485 0.29 -0.5
1,894,923 + A4249_RS09485 0.29 -0.0
1,894,924 - A4249_RS09485 0.30 +0.9
1,894,924 - A4249_RS09485 0.30 +0.3
1,894,988 + A4249_RS09485 0.41 +0.3
1,895,032 + A4249_RS09485 0.49 -1.2
1,895,032 + A4249_RS09485 0.49 -0.3
1,895,032 + A4249_RS09485 0.49 +0.6
1,895,032 + A4249_RS09485 0.49 +0.2
1,895,032 + A4249_RS09485 0.49 +1.1
1,895,032 + A4249_RS09485 0.49 +0.5
1,895,032 + A4249_RS09485 0.49 +0.0
1,895,032 + A4249_RS09485 0.49 -2.1
1,895,033 - A4249_RS09485 0.49 -0.6
1,895,033 - A4249_RS09485 0.49 -0.4
1,895,033 - A4249_RS09485 0.49 -0.1
1,895,033 - A4249_RS09485 0.49 +0.8
1,895,033 - A4249_RS09485 0.49 -0.2
1,895,146 + A4249_RS09485 0.69 +0.0
1,895,146 + A4249_RS09485 0.69 +0.0
1,895,147 - A4249_RS09485 0.69 +0.1
1,895,147 - A4249_RS09485 0.69 +0.1
1,895,147 - A4249_RS09485 0.69 +0.1
1,895,147 - A4249_RS09485 0.69 +0.2
1,895,287 + -0.8
1,895,331 + +0.1
1,895,456 + +0.1
1,895,457 - -0.2
1,895,457 - +0.1
1,895,457 - +1.0
1,895,457 - -0.1
1,895,457 - -1.1
1,895,457 - -0.7
1,895,457 - +0.6
1,895,457 - -1.3
1,895,457 - +0.5
1,895,615 + A4249_RS09490 0.16 -0.5
1,895,660 + A4249_RS09490 0.19 -0.9
1,895,660 + A4249_RS09490 0.19 +0.9
1,895,660 + A4249_RS09490 0.19 -0.5
1,895,660 + A4249_RS09490 0.19 -0.4
1,895,661 - A4249_RS09490 0.20 -0.3
1,895,828 + A4249_RS09490 0.32 +0.1
1,896,268 + A4249_RS09490 0.63 -0.4
1,896,268 + A4249_RS09490 0.63 -2.2
1,896,268 + A4249_RS09490 0.63 +0.1
1,896,269 - A4249_RS09490 0.63 -0.4
1,896,269 - A4249_RS09490 0.63 +1.1

Or see this region's nucleotide sequence