Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS09140

Experiment: Adenine 0.74 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS09135 and A4249_RS09140 are separated by 49 nucleotidesA4249_RS09140 and A4249_RS09145 are separated by 128 nucleotidesA4249_RS09145 and A4249_RS09150 are separated by 168 nucleotides A4249_RS09135: A4249_RS09135 - lytic murein transglycosylase, at 1,828,585 to 1,829,868 _RS09135 A4249_RS09140: A4249_RS09140 - cysteine--tRNA ligase, at 1,829,918 to 1,831,369 _RS09140 A4249_RS09145: A4249_RS09145 - GTP cyclohydrolase I FolE, at 1,831,498 to 1,832,112 _RS09145 A4249_RS09150: A4249_RS09150 - biopolymer transporter ExbD, at 1,832,281 to 1,832,715 _RS09150 Position (kb) 1829 1830 1831 1832Strain fitness (log2 ratio) -1 0 1 2at 1829.065 kb on + strand, within A4249_RS09135at 1829.065 kb on + strand, within A4249_RS09135at 1829.066 kb on - strand, within A4249_RS09135at 1829.066 kb on - strand, within A4249_RS09135at 1829.066 kb on - strand, within A4249_RS09135at 1829.066 kb on - strand, within A4249_RS09135at 1829.066 kb on - strand, within A4249_RS09135at 1829.066 kb on - strand, within A4249_RS09135at 1829.066 kb on - strand, within A4249_RS09135at 1829.098 kb on + strand, within A4249_RS09135at 1829.098 kb on + strand, within A4249_RS09135at 1829.098 kb on + strand, within A4249_RS09135at 1829.098 kb on + strand, within A4249_RS09135at 1829.098 kb on + strand, within A4249_RS09135at 1829.098 kb on + strand, within A4249_RS09135at 1829.098 kb on + strand, within A4249_RS09135at 1829.098 kb on + strand, within A4249_RS09135at 1829.099 kb on - strand, within A4249_RS09135at 1829.099 kb on - strand, within A4249_RS09135at 1829.099 kb on - strand, within A4249_RS09135at 1829.099 kb on - strand, within A4249_RS09135at 1829.099 kb on - strand, within A4249_RS09135at 1829.099 kb on - strand, within A4249_RS09135at 1829.099 kb on - strand, within A4249_RS09135at 1829.099 kb on - strand, within A4249_RS09135at 1829.099 kb on - strand, within A4249_RS09135at 1829.239 kb on + strand, within A4249_RS09135at 1829.239 kb on + strand, within A4249_RS09135at 1829.239 kb on + strand, within A4249_RS09135at 1829.239 kb on + strand, within A4249_RS09135at 1829.239 kb on + strand, within A4249_RS09135at 1829.239 kb on + strand, within A4249_RS09135at 1829.239 kb on + strand, within A4249_RS09135at 1829.239 kb on + strand, within A4249_RS09135at 1829.239 kb on + strand, within A4249_RS09135at 1829.240 kb on - strand, within A4249_RS09135at 1829.240 kb on - strand, within A4249_RS09135at 1829.240 kb on - strand, within A4249_RS09135at 1829.240 kb on - strand, within A4249_RS09135at 1829.240 kb on - strand, within A4249_RS09135at 1829.240 kb on - strand, within A4249_RS09135at 1829.240 kb on - strand, within A4249_RS09135at 1829.240 kb on - strand, within A4249_RS09135at 1829.240 kb on - strand, within A4249_RS09135at 1829.240 kb on - strand, within A4249_RS09135at 1829.368 kb on + strand, within A4249_RS09135at 1829.368 kb on + strand, within A4249_RS09135at 1829.369 kb on - strand, within A4249_RS09135at 1829.369 kb on - strand, within A4249_RS09135at 1829.398 kb on + strand, within A4249_RS09135at 1829.398 kb on + strand, within A4249_RS09135at 1829.398 kb on + strand, within A4249_RS09135at 1829.399 kb on - strand, within A4249_RS09135at 1829.399 kb on - strand, within A4249_RS09135at 1829.434 kb on + strand, within A4249_RS09135at 1829.434 kb on + strand, within A4249_RS09135at 1829.563 kb on + strand, within A4249_RS09135at 1829.563 kb on + strand, within A4249_RS09135at 1829.563 kb on + strand, within A4249_RS09135at 1829.563 kb on + strand, within A4249_RS09135at 1829.563 kb on + strand, within A4249_RS09135at 1829.563 kb on + strand, within A4249_RS09135at 1829.563 kb on + strand, within A4249_RS09135at 1829.563 kb on + strand, within A4249_RS09135at 1829.563 kb on + strand, within A4249_RS09135at 1829.563 kb on + strand, within A4249_RS09135at 1829.564 kb on - strand, within A4249_RS09135at 1829.564 kb on - strand, within A4249_RS09135at 1829.564 kb on - strand, within A4249_RS09135at 1829.564 kb on - strand, within A4249_RS09135at 1829.564 kb on - strand, within A4249_RS09135at 1829.564 kb on - strand, within A4249_RS09135at 1829.564 kb on - strand, within A4249_RS09135at 1829.564 kb on - strand, within A4249_RS09135at 1829.564 kb on - strand, within A4249_RS09135at 1829.564 kb on - strand, within A4249_RS09135at 1829.567 kb on + strand, within A4249_RS09135at 1829.567 kb on + strand, within A4249_RS09135at 1829.567 kb on + strand, within A4249_RS09135at 1829.567 kb on + strand, within A4249_RS09135at 1829.568 kb on - strand, within A4249_RS09135at 1829.568 kb on - strand, within A4249_RS09135at 1829.568 kb on - strand, within A4249_RS09135at 1829.568 kb on - strand, within A4249_RS09135at 1829.568 kb on - strand, within A4249_RS09135at 1829.568 kb on - strand, within A4249_RS09135at 1829.568 kb on - strand, within A4249_RS09135at 1829.578 kb on + strand, within A4249_RS09135at 1829.579 kb on - strand, within A4249_RS09135at 1829.592 kb on - strand, within A4249_RS09135at 1829.596 kb on + strand, within A4249_RS09135at 1829.596 kb on + strand, within A4249_RS09135at 1829.596 kb on + strand, within A4249_RS09135at 1829.596 kb on + strand, within A4249_RS09135at 1829.596 kb on + strand, within A4249_RS09135at 1829.597 kb on - strand, within A4249_RS09135at 1829.597 kb on - strand, within A4249_RS09135at 1829.597 kb on - strand, within A4249_RS09135at 1829.728 kb on + strand, within A4249_RS09135at 1829.729 kb on - strand, within A4249_RS09135at 1829.729 kb on - strand, within A4249_RS09135at 1829.821 kb on + strandat 1829.821 kb on + strandat 1829.822 kb on - strandat 1829.912 kb on + strandat 1829.912 kb on + strandat 1829.912 kb on + strandat 1829.912 kb on + strandat 1829.913 kb on - strandat 1829.913 kb on - strandat 1829.913 kb on - strandat 1829.913 kb on - strandat 1829.913 kb on - strandat 1831.417 kb on + strandat 1831.419 kb on + strandat 1831.419 kb on + strandat 1831.430 kb on + strandat 1831.430 kb on + strandat 1831.430 kb on + strandat 1831.432 kb on + strandat 1831.432 kb on + strandat 1831.432 kb on + strandat 1831.432 kb on + strandat 1831.432 kb on + strandat 1831.433 kb on - strandat 1831.433 kb on - strandat 1831.433 kb on - strandat 1831.433 kb on - strandat 1831.433 kb on - strandat 1831.433 kb on - strandat 1831.433 kb on - strandat 1831.433 kb on - strandat 1831.450 kb on + strandat 1831.450 kb on + strandat 1831.450 kb on + strandat 1831.450 kb on + strandat 1832.140 kb on + strandat 1832.140 kb on + strandat 1832.141 kb on - strandat 1832.141 kb on - strandat 1832.141 kb on - strandat 1832.141 kb on - strandat 1832.142 kb on + strandat 1832.142 kb on + strandat 1832.142 kb on + strandat 1832.142 kb on + strandat 1832.142 kb on + strandat 1832.143 kb on - strandat 1832.143 kb on - strandat 1832.143 kb on - strandat 1832.172 kb on - strandat 1832.182 kb on + strandat 1832.182 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine 0.74 mM (C)
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1,829,065 + A4249_RS09135 0.37 -0.2
1,829,065 + A4249_RS09135 0.37 -0.1
1,829,066 - A4249_RS09135 0.37 -0.0
1,829,066 - A4249_RS09135 0.37 +0.1
1,829,066 - A4249_RS09135 0.37 -0.5
1,829,066 - A4249_RS09135 0.37 -0.0
1,829,066 - A4249_RS09135 0.37 -0.5
1,829,066 - A4249_RS09135 0.37 +0.1
1,829,066 - A4249_RS09135 0.37 +0.0
1,829,098 + A4249_RS09135 0.40 -0.9
1,829,098 + A4249_RS09135 0.40 -0.5
1,829,098 + A4249_RS09135 0.40 +0.3
1,829,098 + A4249_RS09135 0.40 -0.2
1,829,098 + A4249_RS09135 0.40 -0.2
1,829,098 + A4249_RS09135 0.40 -0.0
1,829,098 + A4249_RS09135 0.40 +0.1
1,829,098 + A4249_RS09135 0.40 -0.1
1,829,099 - A4249_RS09135 0.40 +0.0
1,829,099 - A4249_RS09135 0.40 -0.3
1,829,099 - A4249_RS09135 0.40 +0.0
1,829,099 - A4249_RS09135 0.40 +0.0
1,829,099 - A4249_RS09135 0.40 -0.2
1,829,099 - A4249_RS09135 0.40 -0.1
1,829,099 - A4249_RS09135 0.40 -0.3
1,829,099 - A4249_RS09135 0.40 -0.4
1,829,099 - A4249_RS09135 0.40 +0.1
1,829,239 + A4249_RS09135 0.51 -0.0
1,829,239 + A4249_RS09135 0.51 +0.1
1,829,239 + A4249_RS09135 0.51 +0.3
1,829,239 + A4249_RS09135 0.51 +0.0
1,829,239 + A4249_RS09135 0.51 -0.1
1,829,239 + A4249_RS09135 0.51 +0.1
1,829,239 + A4249_RS09135 0.51 -0.3
1,829,239 + A4249_RS09135 0.51 +0.1
1,829,239 + A4249_RS09135 0.51 -0.1
1,829,240 - A4249_RS09135 0.51 -0.6
1,829,240 - A4249_RS09135 0.51 -0.0
1,829,240 - A4249_RS09135 0.51 -0.3
1,829,240 - A4249_RS09135 0.51 -0.0
1,829,240 - A4249_RS09135 0.51 +0.1
1,829,240 - A4249_RS09135 0.51 -0.3
1,829,240 - A4249_RS09135 0.51 +0.0
1,829,240 - A4249_RS09135 0.51 -0.4
1,829,240 - A4249_RS09135 0.51 +0.0
1,829,240 - A4249_RS09135 0.51 +0.2
1,829,368 + A4249_RS09135 0.61 +0.1
1,829,368 + A4249_RS09135 0.61 -0.1
1,829,369 - A4249_RS09135 0.61 -0.1
1,829,369 - A4249_RS09135 0.61 -0.3
1,829,398 + A4249_RS09135 0.63 -0.0
1,829,398 + A4249_RS09135 0.63 -0.2
1,829,398 + A4249_RS09135 0.63 +0.1
1,829,399 - A4249_RS09135 0.63 -0.6
1,829,399 - A4249_RS09135 0.63 +0.2
1,829,434 + A4249_RS09135 0.66 -0.2
1,829,434 + A4249_RS09135 0.66 -0.2
1,829,563 + A4249_RS09135 0.76 +0.1
1,829,563 + A4249_RS09135 0.76 -0.0
1,829,563 + A4249_RS09135 0.76 +0.3
1,829,563 + A4249_RS09135 0.76 -0.2
1,829,563 + A4249_RS09135 0.76 -0.0
1,829,563 + A4249_RS09135 0.76 +0.9
1,829,563 + A4249_RS09135 0.76 +0.3
1,829,563 + A4249_RS09135 0.76 -0.5
1,829,563 + A4249_RS09135 0.76 -0.0
1,829,563 + A4249_RS09135 0.76 -0.4
1,829,564 - A4249_RS09135 0.76 +0.6
1,829,564 - A4249_RS09135 0.76 +0.1
1,829,564 - A4249_RS09135 0.76 +0.3
1,829,564 - A4249_RS09135 0.76 -0.7
1,829,564 - A4249_RS09135 0.76 -0.5
1,829,564 - A4249_RS09135 0.76 -0.2
1,829,564 - A4249_RS09135 0.76 +0.2
1,829,564 - A4249_RS09135 0.76 +0.2
1,829,564 - A4249_RS09135 0.76 -0.3
1,829,564 - A4249_RS09135 0.76 +0.1
1,829,567 + A4249_RS09135 0.76 +0.1
1,829,567 + A4249_RS09135 0.76 -0.2
1,829,567 + A4249_RS09135 0.76 +0.3
1,829,567 + A4249_RS09135 0.76 -1.3
1,829,568 - A4249_RS09135 0.77 +0.1
1,829,568 - A4249_RS09135 0.77 +0.5
1,829,568 - A4249_RS09135 0.77 +0.0
1,829,568 - A4249_RS09135 0.77 -0.1
1,829,568 - A4249_RS09135 0.77 +0.2
1,829,568 - A4249_RS09135 0.77 +0.3
1,829,568 - A4249_RS09135 0.77 +0.2
1,829,578 + A4249_RS09135 0.77 -0.0
1,829,579 - A4249_RS09135 0.77 -0.5
1,829,592 - A4249_RS09135 0.78 +0.0
1,829,596 + A4249_RS09135 0.79 -0.1
1,829,596 + A4249_RS09135 0.79 -0.4
1,829,596 + A4249_RS09135 0.79 -0.1
1,829,596 + A4249_RS09135 0.79 -1.2
1,829,596 + A4249_RS09135 0.79 +0.1
1,829,597 - A4249_RS09135 0.79 +0.0
1,829,597 - A4249_RS09135 0.79 +0.1
1,829,597 - A4249_RS09135 0.79 +0.1
1,829,728 + A4249_RS09135 0.89 +0.0
1,829,729 - A4249_RS09135 0.89 -0.0
1,829,729 - A4249_RS09135 0.89 -0.4
1,829,821 + +0.0
1,829,821 + -0.2
1,829,822 - +0.0
1,829,912 + +0.2
1,829,912 + -0.7
1,829,912 + -0.8
1,829,912 + -0.1
1,829,913 - +0.1
1,829,913 - -0.3
1,829,913 - +0.3
1,829,913 - +0.1
1,829,913 - +0.5
1,831,417 + -1.2
1,831,419 + +1.3
1,831,419 + -0.2
1,831,430 + -0.2
1,831,430 + -0.1
1,831,430 + +1.8
1,831,432 + -0.0
1,831,432 + +0.3
1,831,432 + +1.1
1,831,432 + -0.3
1,831,432 + -0.4
1,831,433 - +0.6
1,831,433 - +0.5
1,831,433 - -0.0
1,831,433 - +0.8
1,831,433 - -0.9
1,831,433 - +0.8
1,831,433 - -0.5
1,831,433 - -1.5
1,831,450 + +0.8
1,831,450 + -0.2
1,831,450 + -0.9
1,831,450 + +0.3
1,832,140 + +1.0
1,832,140 + +1.0
1,832,141 - -0.1
1,832,141 - -0.2
1,832,141 - +0.0
1,832,141 - -1.4
1,832,142 + +0.3
1,832,142 + +0.3
1,832,142 + -1.2
1,832,142 + -1.0
1,832,142 + +0.2
1,832,143 - -1.2
1,832,143 - +0.1
1,832,143 - -1.0
1,832,172 - -0.1
1,832,182 + -0.4
1,832,182 + -0.1

Or see this region's nucleotide sequence