Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS09110

Experiment: Adenine 0.74 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS09105 and A4249_RS09110 are separated by 96 nucleotidesA4249_RS09110 and A4249_RS09115 are separated by 106 nucleotides A4249_RS09105: A4249_RS09105 - M3 family oligoendopeptidase, at 1,821,458 to 1,823,251 _RS09105 A4249_RS09110: A4249_RS09110 - DUF4153 domain-containing protein, at 1,823,348 to 1,825,117 _RS09110 A4249_RS09115: A4249_RS09115 - sigma-54 dependent transcriptional regulator, at 1,825,224 to 1,826,675 _RS09115 Position (kb) 1823 1824 1825 1826Strain fitness (log2 ratio) -2 -1 0 1at 1822.389 kb on + strand, within A4249_RS09105at 1822.390 kb on - strand, within A4249_RS09105at 1822.390 kb on - strand, within A4249_RS09105at 1822.390 kb on - strand, within A4249_RS09105at 1822.392 kb on + strand, within A4249_RS09105at 1822.393 kb on - strand, within A4249_RS09105at 1823.004 kb on + strand, within A4249_RS09105at 1823.043 kb on + strand, within A4249_RS09105at 1823.044 kb on - strand, within A4249_RS09105at 1823.190 kb on + strandat 1823.190 kb on + strandat 1823.190 kb on + strandat 1823.190 kb on + strandat 1823.190 kb on + strandat 1823.191 kb on - strandat 1823.225 kb on - strandat 1823.295 kb on + strandat 1823.295 kb on + strandat 1823.295 kb on + strandat 1823.296 kb on - strandat 1823.453 kb on + strandat 1823.453 kb on + strandat 1823.453 kb on + strandat 1823.453 kb on + strandat 1823.453 kb on + strandat 1823.453 kb on + strandat 1823.454 kb on - strandat 1823.454 kb on - strandat 1823.454 kb on - strandat 1823.462 kb on + strandat 1823.462 kb on + strandat 1823.463 kb on - strandat 1823.463 kb on - strandat 1823.463 kb on - strandat 1823.537 kb on + strand, within A4249_RS09110at 1823.537 kb on + strand, within A4249_RS09110at 1823.537 kb on + strand, within A4249_RS09110at 1823.537 kb on + strand, within A4249_RS09110at 1823.537 kb on + strand, within A4249_RS09110at 1823.537 kb on + strand, within A4249_RS09110at 1823.589 kb on + strand, within A4249_RS09110at 1823.589 kb on + strand, within A4249_RS09110at 1823.711 kb on - strand, within A4249_RS09110at 1823.728 kb on + strand, within A4249_RS09110at 1823.728 kb on + strand, within A4249_RS09110at 1823.729 kb on - strand, within A4249_RS09110at 1823.729 kb on - strand, within A4249_RS09110at 1823.784 kb on - strand, within A4249_RS09110at 1823.793 kb on - strand, within A4249_RS09110at 1824.120 kb on + strand, within A4249_RS09110at 1824.121 kb on - strand, within A4249_RS09110at 1824.194 kb on + strand, within A4249_RS09110at 1824.194 kb on + strand, within A4249_RS09110at 1824.194 kb on + strand, within A4249_RS09110at 1824.195 kb on - strand, within A4249_RS09110at 1824.195 kb on - strand, within A4249_RS09110at 1824.195 kb on - strand, within A4249_RS09110at 1824.377 kb on + strand, within A4249_RS09110at 1824.377 kb on + strand, within A4249_RS09110at 1824.377 kb on + strand, within A4249_RS09110at 1824.378 kb on - strand, within A4249_RS09110at 1824.378 kb on - strand, within A4249_RS09110at 1824.378 kb on - strand, within A4249_RS09110at 1824.389 kb on + strand, within A4249_RS09110at 1824.390 kb on - strand, within A4249_RS09110at 1824.578 kb on + strand, within A4249_RS09110at 1824.578 kb on + strand, within A4249_RS09110at 1824.578 kb on + strand, within A4249_RS09110at 1824.578 kb on + strand, within A4249_RS09110at 1824.579 kb on - strand, within A4249_RS09110at 1824.579 kb on - strand, within A4249_RS09110at 1824.579 kb on - strand, within A4249_RS09110at 1824.651 kb on + strand, within A4249_RS09110at 1824.651 kb on + strand, within A4249_RS09110at 1824.651 kb on + strand, within A4249_RS09110at 1824.651 kb on + strand, within A4249_RS09110at 1824.652 kb on - strand, within A4249_RS09110at 1824.652 kb on - strand, within A4249_RS09110at 1824.652 kb on - strand, within A4249_RS09110at 1824.652 kb on - strand, within A4249_RS09110at 1824.652 kb on - strand, within A4249_RS09110at 1824.652 kb on - strand, within A4249_RS09110at 1824.652 kb on - strand, within A4249_RS09110at 1825.208 kb on - strandat 1825.208 kb on - strandat 1825.210 kb on + strandat 1825.210 kb on + strandat 1825.210 kb on + strandat 1825.210 kb on + strandat 1825.210 kb on + strandat 1825.210 kb on + strandat 1825.210 kb on + strandat 1825.210 kb on + strandat 1825.210 kb on + strandat 1825.210 kb on + strandat 1825.210 kb on + strandat 1825.210 kb on + strandat 1825.210 kb on + strandat 1825.210 kb on + strandat 1825.211 kb on - strandat 1825.211 kb on - strandat 1825.211 kb on - strandat 1825.211 kb on - strandat 1825.211 kb on - strandat 1825.211 kb on - strandat 1825.211 kb on - strandat 1825.211 kb on - strandat 1825.211 kb on - strandat 1825.211 kb on - strandat 1825.211 kb on - strandat 1825.211 kb on - strandat 1825.211 kb on - strandat 1825.211 kb on - strandat 1825.211 kb on - strandat 1825.211 kb on - strandat 1825.211 kb on - strandat 1825.433 kb on + strand, within A4249_RS09115at 1825.652 kb on + strand, within A4249_RS09115

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine 0.74 mM (C)
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1,822,389 + A4249_RS09105 0.52 -0.4
1,822,390 - A4249_RS09105 0.52 -0.3
1,822,390 - A4249_RS09105 0.52 -0.1
1,822,390 - A4249_RS09105 0.52 +0.2
1,822,392 + A4249_RS09105 0.52 -0.4
1,822,393 - A4249_RS09105 0.52 +0.1
1,823,004 + A4249_RS09105 0.86 +0.5
1,823,043 + A4249_RS09105 0.88 +0.6
1,823,044 - A4249_RS09105 0.88 -0.3
1,823,190 + +0.0
1,823,190 + -0.9
1,823,190 + +0.1
1,823,190 + +0.2
1,823,190 + +0.1
1,823,191 - -0.1
1,823,225 - +0.5
1,823,295 + +0.2
1,823,295 + +0.2
1,823,295 + -0.1
1,823,296 - -0.6
1,823,453 + +0.1
1,823,453 + +0.5
1,823,453 + -0.2
1,823,453 + -0.9
1,823,453 + -0.4
1,823,453 + +0.8
1,823,454 - -0.7
1,823,454 - -0.5
1,823,454 - +0.4
1,823,462 + -0.0
1,823,462 + +0.7
1,823,463 - -0.5
1,823,463 - -0.2
1,823,463 - +0.1
1,823,537 + A4249_RS09110 0.11 -0.4
1,823,537 + A4249_RS09110 0.11 +0.4
1,823,537 + A4249_RS09110 0.11 +0.2
1,823,537 + A4249_RS09110 0.11 -0.6
1,823,537 + A4249_RS09110 0.11 +0.3
1,823,537 + A4249_RS09110 0.11 -0.3
1,823,589 + A4249_RS09110 0.14 -0.2
1,823,589 + A4249_RS09110 0.14 +0.4
1,823,711 - A4249_RS09110 0.21 +0.3
1,823,728 + A4249_RS09110 0.21 +0.5
1,823,728 + A4249_RS09110 0.21 +0.0
1,823,729 - A4249_RS09110 0.22 +0.0
1,823,729 - A4249_RS09110 0.22 +0.0
1,823,784 - A4249_RS09110 0.25 +0.2
1,823,793 - A4249_RS09110 0.25 -0.5
1,824,120 + A4249_RS09110 0.44 -0.2
1,824,121 - A4249_RS09110 0.44 -1.1
1,824,194 + A4249_RS09110 0.48 -0.2
1,824,194 + A4249_RS09110 0.48 -0.2
1,824,194 + A4249_RS09110 0.48 -0.7
1,824,195 - A4249_RS09110 0.48 +0.5
1,824,195 - A4249_RS09110 0.48 +1.0
1,824,195 - A4249_RS09110 0.48 +0.6
1,824,377 + A4249_RS09110 0.58 -1.3
1,824,377 + A4249_RS09110 0.58 +0.5
1,824,377 + A4249_RS09110 0.58 +0.2
1,824,378 - A4249_RS09110 0.58 +0.5
1,824,378 - A4249_RS09110 0.58 -0.7
1,824,378 - A4249_RS09110 0.58 +0.1
1,824,389 + A4249_RS09110 0.59 +0.9
1,824,390 - A4249_RS09110 0.59 -0.5
1,824,578 + A4249_RS09110 0.69 -0.0
1,824,578 + A4249_RS09110 0.69 +0.0
1,824,578 + A4249_RS09110 0.69 -0.2
1,824,578 + A4249_RS09110 0.69 -0.4
1,824,579 - A4249_RS09110 0.70 -0.1
1,824,579 - A4249_RS09110 0.70 +1.1
1,824,579 - A4249_RS09110 0.70 -0.1
1,824,651 + A4249_RS09110 0.74 -0.2
1,824,651 + A4249_RS09110 0.74 -0.1
1,824,651 + A4249_RS09110 0.74 +0.1
1,824,651 + A4249_RS09110 0.74 +0.3
1,824,652 - A4249_RS09110 0.74 -0.7
1,824,652 - A4249_RS09110 0.74 -0.1
1,824,652 - A4249_RS09110 0.74 +0.2
1,824,652 - A4249_RS09110 0.74 +0.8
1,824,652 - A4249_RS09110 0.74 +0.4
1,824,652 - A4249_RS09110 0.74 -0.9
1,824,652 - A4249_RS09110 0.74 -0.0
1,825,208 - -2.4
1,825,208 - -0.6
1,825,210 + +0.2
1,825,210 + -0.4
1,825,210 + -0.4
1,825,210 + -0.1
1,825,210 + +0.1
1,825,210 + -0.1
1,825,210 + +0.4
1,825,210 + +0.3
1,825,210 + +0.3
1,825,210 + +0.1
1,825,210 + -0.1
1,825,210 + +0.3
1,825,210 + -0.2
1,825,210 + -0.3
1,825,211 - +0.9
1,825,211 - -0.9
1,825,211 - +0.3
1,825,211 - +0.7
1,825,211 - -0.2
1,825,211 - -0.4
1,825,211 - -0.7
1,825,211 - -0.0
1,825,211 - +0.1
1,825,211 - -1.4
1,825,211 - +0.1
1,825,211 - +0.3
1,825,211 - -0.0
1,825,211 - +0.1
1,825,211 - -0.7
1,825,211 - -0.7
1,825,211 - +0.3
1,825,433 + A4249_RS09115 0.14 +0.4
1,825,652 + A4249_RS09115 0.29 -1.7

Or see this region's nucleotide sequence