Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS08855

Experiment: Adenine 0.74 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS08845 and A4249_RS08850 are separated by 153 nucleotidesA4249_RS08850 and A4249_RS08855 are separated by 159 nucleotidesA4249_RS08855 and A4249_RS08860 are separated by 9 nucleotidesA4249_RS08860 and A4249_RS08865 are separated by 109 nucleotidesA4249_RS08865 and A4249_RS08870 are separated by 88 nucleotides A4249_RS08845: A4249_RS08845 - ABC transporter transmembrane domain-containing protein, at 1,771,641 to 1,773,509 _RS08845 A4249_RS08850: A4249_RS08850 - 50S ribosomal protein L31, at 1,773,663 to 1,773,887 _RS08850 A4249_RS08855: A4249_RS08855 - L,D-transpeptidase family protein, at 1,774,047 to 1,775,609 _RS08855 A4249_RS08860: A4249_RS08860 - DUF1465 family protein, at 1,775,619 to 1,776,119 _RS08860 A4249_RS08865: A4249_RS08865 - DUF1192 domain-containing protein, at 1,776,229 to 1,776,432 _RS08865 A4249_RS08870: A4249_RS08870 - NAD(P)H-quinone oxidoreductase, at 1,776,521 to 1,777,492 _RS08870 Position (kb) 1774 1775 1776Strain fitness (log2 ratio) -3 -2 -1 0 1at 1773.052 kb on + strand, within A4249_RS08845at 1773.052 kb on + strand, within A4249_RS08845at 1773.052 kb on + strand, within A4249_RS08845at 1773.052 kb on + strand, within A4249_RS08845at 1773.052 kb on + strand, within A4249_RS08845at 1773.053 kb on - strand, within A4249_RS08845at 1773.053 kb on - strand, within A4249_RS08845at 1773.053 kb on - strand, within A4249_RS08845at 1773.053 kb on - strand, within A4249_RS08845at 1773.053 kb on - strand, within A4249_RS08845at 1773.053 kb on - strand, within A4249_RS08845at 1773.053 kb on - strand, within A4249_RS08845at 1773.053 kb on - strand, within A4249_RS08845at 1773.053 kb on - strand, within A4249_RS08845at 1773.053 kb on - strand, within A4249_RS08845at 1773.053 kb on - strand, within A4249_RS08845at 1773.053 kb on - strand, within A4249_RS08845at 1773.053 kb on - strand, within A4249_RS08845at 1773.139 kb on + strand, within A4249_RS08845at 1773.139 kb on + strand, within A4249_RS08845at 1773.139 kb on + strand, within A4249_RS08845at 1773.139 kb on + strand, within A4249_RS08845at 1773.140 kb on - strand, within A4249_RS08845at 1773.140 kb on - strand, within A4249_RS08845at 1773.140 kb on - strand, within A4249_RS08845at 1773.140 kb on - strand, within A4249_RS08845at 1773.140 kb on - strand, within A4249_RS08845at 1773.885 kb on + strandat 1773.885 kb on + strandat 1773.885 kb on + strandat 1773.885 kb on + strandat 1773.885 kb on + strandat 1773.885 kb on + strandat 1773.885 kb on + strandat 1773.885 kb on + strandat 1773.885 kb on + strandat 1773.886 kb on - strandat 1773.886 kb on - strandat 1773.886 kb on - strandat 1773.886 kb on - strandat 1773.886 kb on - strandat 1773.886 kb on - strandat 1773.977 kb on + strandat 1774.046 kb on + strandat 1774.046 kb on + strandat 1774.046 kb on + strandat 1774.046 kb on + strandat 1774.046 kb on + strandat 1774.046 kb on + strandat 1774.046 kb on + strandat 1774.047 kb on - strandat 1774.047 kb on - strandat 1774.052 kb on + strandat 1774.158 kb on + strandat 1774.158 kb on + strandat 1774.158 kb on + strandat 1774.224 kb on + strand, within A4249_RS08855at 1774.225 kb on - strand, within A4249_RS08855at 1774.225 kb on - strand, within A4249_RS08855at 1774.225 kb on - strand, within A4249_RS08855at 1774.399 kb on - strand, within A4249_RS08855at 1774.531 kb on - strand, within A4249_RS08855at 1775.085 kb on + strand, within A4249_RS08855at 1775.085 kb on + strand, within A4249_RS08855at 1775.086 kb on - strand, within A4249_RS08855at 1775.157 kb on + strand, within A4249_RS08855at 1775.157 kb on + strand, within A4249_RS08855at 1775.157 kb on + strand, within A4249_RS08855at 1775.158 kb on - strand, within A4249_RS08855at 1775.158 kb on - strand, within A4249_RS08855at 1775.158 kb on - strand, within A4249_RS08855at 1775.211 kb on + strand, within A4249_RS08855at 1775.212 kb on - strand, within A4249_RS08855at 1775.238 kb on + strand, within A4249_RS08855at 1775.238 kb on + strand, within A4249_RS08855at 1775.239 kb on - strand, within A4249_RS08855at 1775.455 kb on - strandat 1775.508 kb on + strandat 1775.698 kb on + strand, within A4249_RS08860at 1775.698 kb on + strand, within A4249_RS08860at 1775.698 kb on + strand, within A4249_RS08860at 1775.698 kb on + strand, within A4249_RS08860at 1775.698 kb on + strand, within A4249_RS08860at 1775.698 kb on + strand, within A4249_RS08860at 1775.699 kb on - strand, within A4249_RS08860at 1775.699 kb on - strand, within A4249_RS08860at 1775.699 kb on - strand, within A4249_RS08860at 1775.699 kb on - strand, within A4249_RS08860at 1775.699 kb on - strand, within A4249_RS08860at 1775.699 kb on - strand, within A4249_RS08860at 1775.699 kb on - strand, within A4249_RS08860at 1775.699 kb on - strand, within A4249_RS08860at 1775.716 kb on + strand, within A4249_RS08860at 1775.716 kb on + strand, within A4249_RS08860at 1775.716 kb on + strand, within A4249_RS08860at 1775.717 kb on - strand, within A4249_RS08860at 1775.717 kb on - strand, within A4249_RS08860at 1775.717 kb on - strand, within A4249_RS08860at 1775.717 kb on - strand, within A4249_RS08860at 1775.717 kb on - strand, within A4249_RS08860at 1775.717 kb on - strand, within A4249_RS08860at 1775.717 kb on - strand, within A4249_RS08860at 1775.755 kb on + strand, within A4249_RS08860at 1775.755 kb on + strand, within A4249_RS08860at 1775.755 kb on + strand, within A4249_RS08860at 1775.756 kb on - strand, within A4249_RS08860at 1775.756 kb on - strand, within A4249_RS08860at 1775.756 kb on - strand, within A4249_RS08860at 1775.756 kb on - strand, within A4249_RS08860at 1775.941 kb on + strand, within A4249_RS08860at 1775.941 kb on + strand, within A4249_RS08860at 1775.942 kb on - strand, within A4249_RS08860at 1776.001 kb on + strand, within A4249_RS08860at 1776.002 kb on - strand, within A4249_RS08860at 1776.356 kb on + strand, within A4249_RS08865at 1776.357 kb on - strand, within A4249_RS08865at 1776.480 kb on + strandat 1776.481 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine 0.74 mM (C)
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1,773,052 + A4249_RS08845 0.75 +0.4
1,773,052 + A4249_RS08845 0.75 -0.2
1,773,052 + A4249_RS08845 0.75 -1.3
1,773,052 + A4249_RS08845 0.75 -0.9
1,773,052 + A4249_RS08845 0.75 -1.6
1,773,053 - A4249_RS08845 0.76 +0.9
1,773,053 - A4249_RS08845 0.76 +0.3
1,773,053 - A4249_RS08845 0.76 -1.3
1,773,053 - A4249_RS08845 0.76 +0.1
1,773,053 - A4249_RS08845 0.76 -2.9
1,773,053 - A4249_RS08845 0.76 +0.2
1,773,053 - A4249_RS08845 0.76 -1.1
1,773,053 - A4249_RS08845 0.76 -1.8
1,773,053 - A4249_RS08845 0.76 -0.3
1,773,053 - A4249_RS08845 0.76 +1.1
1,773,053 - A4249_RS08845 0.76 +0.7
1,773,053 - A4249_RS08845 0.76 -1.2
1,773,053 - A4249_RS08845 0.76 +0.7
1,773,139 + A4249_RS08845 0.80 -0.0
1,773,139 + A4249_RS08845 0.80 +0.4
1,773,139 + A4249_RS08845 0.80 -0.5
1,773,139 + A4249_RS08845 0.80 +0.2
1,773,140 - A4249_RS08845 0.80 +0.3
1,773,140 - A4249_RS08845 0.80 -1.2
1,773,140 - A4249_RS08845 0.80 -0.3
1,773,140 - A4249_RS08845 0.80 +0.4
1,773,140 - A4249_RS08845 0.80 -0.3
1,773,885 + -0.0
1,773,885 + -0.7
1,773,885 + -0.7
1,773,885 + -2.1
1,773,885 + +0.5
1,773,885 + -0.1
1,773,885 + -0.3
1,773,885 + -0.7
1,773,885 + -0.2
1,773,886 - -0.1
1,773,886 - +0.6
1,773,886 - -0.5
1,773,886 - -0.2
1,773,886 - +0.2
1,773,886 - +0.1
1,773,977 + +0.4
1,774,046 + +0.3
1,774,046 + -0.6
1,774,046 + -1.0
1,774,046 + -0.7
1,774,046 + +1.1
1,774,046 + -0.2
1,774,046 + -0.4
1,774,047 - -0.9
1,774,047 - -1.0
1,774,052 + +1.6
1,774,158 + -0.7
1,774,158 + +0.6
1,774,158 + -0.7
1,774,224 + A4249_RS08855 0.11 +0.1
1,774,225 - A4249_RS08855 0.11 -1.2
1,774,225 - A4249_RS08855 0.11 -0.9
1,774,225 - A4249_RS08855 0.11 +0.6
1,774,399 - A4249_RS08855 0.23 -0.2
1,774,531 - A4249_RS08855 0.31 +1.1
1,775,085 + A4249_RS08855 0.66 +0.6
1,775,085 + A4249_RS08855 0.66 +0.7
1,775,086 - A4249_RS08855 0.66 -1.3
1,775,157 + A4249_RS08855 0.71 -0.2
1,775,157 + A4249_RS08855 0.71 -0.7
1,775,157 + A4249_RS08855 0.71 +0.4
1,775,158 - A4249_RS08855 0.71 -0.7
1,775,158 - A4249_RS08855 0.71 +0.6
1,775,158 - A4249_RS08855 0.71 -0.4
1,775,211 + A4249_RS08855 0.74 -0.9
1,775,212 - A4249_RS08855 0.75 -1.4
1,775,238 + A4249_RS08855 0.76 -1.4
1,775,238 + A4249_RS08855 0.76 +1.1
1,775,239 - A4249_RS08855 0.76 +0.1
1,775,455 - +0.6
1,775,508 + +0.1
1,775,698 + A4249_RS08860 0.16 -0.9
1,775,698 + A4249_RS08860 0.16 +0.2
1,775,698 + A4249_RS08860 0.16 +0.1
1,775,698 + A4249_RS08860 0.16 +0.1
1,775,698 + A4249_RS08860 0.16 +0.0
1,775,698 + A4249_RS08860 0.16 +0.4
1,775,699 - A4249_RS08860 0.16 -0.1
1,775,699 - A4249_RS08860 0.16 -0.8
1,775,699 - A4249_RS08860 0.16 +0.1
1,775,699 - A4249_RS08860 0.16 +0.3
1,775,699 - A4249_RS08860 0.16 -0.2
1,775,699 - A4249_RS08860 0.16 -0.7
1,775,699 - A4249_RS08860 0.16 +0.6
1,775,699 - A4249_RS08860 0.16 -0.2
1,775,716 + A4249_RS08860 0.19 +0.6
1,775,716 + A4249_RS08860 0.19 +0.0
1,775,716 + A4249_RS08860 0.19 -0.1
1,775,717 - A4249_RS08860 0.20 +0.2
1,775,717 - A4249_RS08860 0.20 -0.6
1,775,717 - A4249_RS08860 0.20 +0.2
1,775,717 - A4249_RS08860 0.20 -0.4
1,775,717 - A4249_RS08860 0.20 -0.1
1,775,717 - A4249_RS08860 0.20 +0.4
1,775,717 - A4249_RS08860 0.20 +0.2
1,775,755 + A4249_RS08860 0.27 -0.0
1,775,755 + A4249_RS08860 0.27 -0.2
1,775,755 + A4249_RS08860 0.27 -0.3
1,775,756 - A4249_RS08860 0.27 -0.8
1,775,756 - A4249_RS08860 0.27 +0.7
1,775,756 - A4249_RS08860 0.27 +0.8
1,775,756 - A4249_RS08860 0.27 +0.3
1,775,941 + A4249_RS08860 0.64 +0.7
1,775,941 + A4249_RS08860 0.64 +0.0
1,775,942 - A4249_RS08860 0.64 -1.1
1,776,001 + A4249_RS08860 0.76 -0.3
1,776,002 - A4249_RS08860 0.76 -0.3
1,776,356 + A4249_RS08865 0.62 -0.2
1,776,357 - A4249_RS08865 0.63 +0.3
1,776,480 + +0.1
1,776,481 - -0.9

Or see this region's nucleotide sequence