Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS08315

Experiment: Adenine 0.74 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS08295 and A4249_RS08300 are separated by 176 nucleotidesA4249_RS08300 and A4249_RS08305 are separated by 51 nucleotidesA4249_RS08305 and A4249_RS08310 are separated by 23 nucleotidesA4249_RS08310 and A4249_RS08315 are separated by 2 nucleotidesA4249_RS08315 and A4249_RS08320 are separated by 4 nucleotides A4249_RS08295: A4249_RS08295 - TorF family putative porin, at 1,666,832 to 1,667,548 _RS08295 A4249_RS08300: A4249_RS08300 - cold-shock protein, at 1,667,725 to 1,667,937 _RS08300 A4249_RS08305: A4249_RS08305 - hypothetical protein, at 1,667,989 to 1,668,183 _RS08305 A4249_RS08310: A4249_RS08310 - hypothetical protein, at 1,668,207 to 1,668,464 _RS08310 A4249_RS08315: A4249_RS08315 - cystathionine gamma-synthase, at 1,668,467 to 1,669,630 _RS08315 A4249_RS08320: A4249_RS08320 - cystathionine beta-synthase, at 1,669,635 to 1,671,035 _RS08320 Position (kb) 1668 1669 1670Strain fitness (log2 ratio) -2 -1 0 1at 1667.471 kb on + strand, within A4249_RS08295at 1667.471 kb on + strand, within A4249_RS08295at 1667.471 kb on + strand, within A4249_RS08295at 1667.474 kb on + strand, within A4249_RS08295at 1667.474 kb on + strand, within A4249_RS08295at 1667.474 kb on + strand, within A4249_RS08295at 1667.475 kb on - strand, within A4249_RS08295at 1667.507 kb on + strandat 1667.507 kb on + strandat 1667.507 kb on + strandat 1667.507 kb on + strandat 1667.507 kb on + strandat 1667.507 kb on + strandat 1667.507 kb on + strandat 1667.508 kb on - strandat 1667.508 kb on - strandat 1667.508 kb on - strandat 1667.508 kb on - strandat 1667.565 kb on + strandat 1667.587 kb on + strandat 1667.587 kb on + strandat 1667.587 kb on + strandat 1667.587 kb on + strandat 1667.588 kb on - strandat 1667.588 kb on - strandat 1667.588 kb on - strandat 1667.588 kb on - strandat 1667.588 kb on - strandat 1667.588 kb on - strandat 1667.588 kb on - strandat 1667.741 kb on + strandat 1667.741 kb on + strandat 1667.741 kb on + strandat 1667.741 kb on + strandat 1667.741 kb on + strandat 1667.742 kb on - strandat 1667.742 kb on - strandat 1667.742 kb on - strandat 1667.742 kb on - strandat 1667.749 kb on + strand, within A4249_RS08300at 1667.750 kb on - strand, within A4249_RS08300at 1667.750 kb on - strand, within A4249_RS08300at 1667.923 kb on - strandat 1667.936 kb on - strandat 1667.936 kb on - strandat 1667.936 kb on - strandat 1668.466 kb on - strandat 1668.466 kb on - strandat 1668.649 kb on + strand, within A4249_RS08315at 1668.650 kb on - strand, within A4249_RS08315at 1668.786 kb on + strand, within A4249_RS08315at 1668.786 kb on + strand, within A4249_RS08315at 1668.786 kb on + strand, within A4249_RS08315at 1668.787 kb on - strand, within A4249_RS08315at 1668.787 kb on - strand, within A4249_RS08315at 1668.787 kb on - strand, within A4249_RS08315at 1668.787 kb on - strand, within A4249_RS08315at 1668.897 kb on - strand, within A4249_RS08315at 1668.897 kb on - strand, within A4249_RS08315at 1669.020 kb on + strand, within A4249_RS08315at 1669.020 kb on + strand, within A4249_RS08315at 1669.021 kb on - strand, within A4249_RS08315at 1669.021 kb on - strand, within A4249_RS08315at 1669.021 kb on - strand, within A4249_RS08315at 1669.021 kb on - strand, within A4249_RS08315at 1669.021 kb on - strand, within A4249_RS08315at 1669.254 kb on + strand, within A4249_RS08315at 1669.254 kb on + strand, within A4249_RS08315at 1669.254 kb on + strand, within A4249_RS08315at 1669.254 kb on + strand, within A4249_RS08315at 1669.254 kb on + strand, within A4249_RS08315at 1669.255 kb on - strand, within A4249_RS08315at 1669.255 kb on - strand, within A4249_RS08315at 1669.255 kb on - strand, within A4249_RS08315at 1669.255 kb on - strand, within A4249_RS08315at 1669.255 kb on - strand, within A4249_RS08315at 1669.317 kb on + strand, within A4249_RS08315at 1669.318 kb on - strand, within A4249_RS08315at 1669.435 kb on + strand, within A4249_RS08315at 1669.436 kb on - strand, within A4249_RS08315at 1669.479 kb on + strand, within A4249_RS08315at 1669.479 kb on + strand, within A4249_RS08315at 1669.479 kb on + strand, within A4249_RS08315at 1669.480 kb on - strand, within A4249_RS08315at 1669.480 kb on - strand, within A4249_RS08315at 1669.480 kb on - strand, within A4249_RS08315at 1669.480 kb on - strand, within A4249_RS08315at 1669.480 kb on - strand, within A4249_RS08315at 1669.480 kb on - strand, within A4249_RS08315at 1669.480 kb on - strand, within A4249_RS08315at 1669.485 kb on + strand, within A4249_RS08315at 1669.485 kb on + strand, within A4249_RS08315at 1669.485 kb on + strand, within A4249_RS08315at 1669.485 kb on + strand, within A4249_RS08315at 1669.486 kb on - strand, within A4249_RS08315at 1669.486 kb on - strand, within A4249_RS08315at 1669.486 kb on - strand, within A4249_RS08315at 1669.486 kb on - strand, within A4249_RS08315at 1669.486 kb on - strand, within A4249_RS08315at 1669.518 kb on + strandat 1669.518 kb on + strandat 1669.533 kb on + strandat 1669.533 kb on + strandat 1669.533 kb on + strandat 1669.533 kb on + strandat 1669.533 kb on + strandat 1669.534 kb on - strandat 1669.534 kb on - strandat 1669.631 kb on - strandat 1669.631 kb on - strandat 1669.631 kb on - strandat 1669.631 kb on - strandat 1669.743 kb on + strandat 1669.920 kb on + strand, within A4249_RS08320at 1669.920 kb on + strand, within A4249_RS08320at 1669.921 kb on - strand, within A4249_RS08320at 1669.921 kb on - strand, within A4249_RS08320at 1669.999 kb on + strand, within A4249_RS08320at 1669.999 kb on + strand, within A4249_RS08320at 1669.999 kb on + strand, within A4249_RS08320at 1669.999 kb on + strand, within A4249_RS08320at 1669.999 kb on + strand, within A4249_RS08320at 1670.000 kb on - strand, within A4249_RS08320at 1670.000 kb on - strand, within A4249_RS08320at 1670.000 kb on - strand, within A4249_RS08320at 1670.000 kb on - strand, within A4249_RS08320at 1670.000 kb on - strand, within A4249_RS08320at 1670.078 kb on + strand, within A4249_RS08320at 1670.079 kb on - strand, within A4249_RS08320at 1670.079 kb on - strand, within A4249_RS08320at 1670.080 kb on + strand, within A4249_RS08320at 1670.080 kb on + strand, within A4249_RS08320at 1670.080 kb on + strand, within A4249_RS08320at 1670.081 kb on - strand, within A4249_RS08320at 1670.081 kb on - strand, within A4249_RS08320at 1670.081 kb on - strand, within A4249_RS08320at 1670.095 kb on + strand, within A4249_RS08320at 1670.095 kb on + strand, within A4249_RS08320at 1670.095 kb on + strand, within A4249_RS08320at 1670.095 kb on + strand, within A4249_RS08320at 1670.095 kb on + strand, within A4249_RS08320at 1670.096 kb on - strand, within A4249_RS08320at 1670.096 kb on - strand, within A4249_RS08320at 1670.096 kb on - strand, within A4249_RS08320at 1670.096 kb on - strand, within A4249_RS08320at 1670.096 kb on - strand, within A4249_RS08320at 1670.096 kb on - strand, within A4249_RS08320at 1670.096 kb on - strand, within A4249_RS08320at 1670.096 kb on - strand, within A4249_RS08320at 1670.266 kb on + strand, within A4249_RS08320at 1670.266 kb on + strand, within A4249_RS08320at 1670.266 kb on + strand, within A4249_RS08320at 1670.266 kb on + strand, within A4249_RS08320at 1670.267 kb on - strand, within A4249_RS08320at 1670.267 kb on - strand, within A4249_RS08320at 1670.267 kb on - strand, within A4249_RS08320at 1670.267 kb on - strand, within A4249_RS08320at 1670.267 kb on - strand, within A4249_RS08320at 1670.267 kb on - strand, within A4249_RS08320at 1670.335 kb on + strand, within A4249_RS08320at 1670.335 kb on + strand, within A4249_RS08320at 1670.336 kb on - strand, within A4249_RS08320at 1670.336 kb on - strand, within A4249_RS08320at 1670.336 kb on - strand, within A4249_RS08320at 1670.336 kb on - strand, within A4249_RS08320at 1670.336 kb on - strand, within A4249_RS08320at 1670.336 kb on - strand, within A4249_RS08320at 1670.584 kb on + strand, within A4249_RS08320at 1670.584 kb on + strand, within A4249_RS08320at 1670.584 kb on + strand, within A4249_RS08320at 1670.584 kb on + strand, within A4249_RS08320at 1670.585 kb on - strand, within A4249_RS08320at 1670.585 kb on - strand, within A4249_RS08320at 1670.585 kb on - strand, within A4249_RS08320at 1670.585 kb on - strand, within A4249_RS08320at 1670.585 kb on - strand, within A4249_RS08320

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine 0.74 mM (C)
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1,667,471 + A4249_RS08295 0.89 +0.7
1,667,471 + A4249_RS08295 0.89 +0.5
1,667,471 + A4249_RS08295 0.89 +0.8
1,667,474 + A4249_RS08295 0.90 +0.3
1,667,474 + A4249_RS08295 0.90 +0.3
1,667,474 + A4249_RS08295 0.90 -0.1
1,667,475 - A4249_RS08295 0.90 -0.1
1,667,507 + +0.4
1,667,507 + -0.6
1,667,507 + -0.6
1,667,507 + -1.6
1,667,507 + -0.3
1,667,507 + +0.1
1,667,507 + +0.7
1,667,508 - -0.5
1,667,508 - +0.7
1,667,508 - +0.3
1,667,508 - +0.4
1,667,565 + +0.3
1,667,587 + -1.1
1,667,587 + -0.4
1,667,587 + -0.0
1,667,587 + +0.1
1,667,588 - +0.3
1,667,588 - -2.4
1,667,588 - +0.3
1,667,588 - -0.0
1,667,588 - -0.4
1,667,588 - +0.3
1,667,588 - +0.2
1,667,741 + -0.4
1,667,741 + +0.1
1,667,741 + -0.7
1,667,741 + -0.8
1,667,741 + -1.0
1,667,742 - +0.9
1,667,742 - +0.2
1,667,742 - +0.1
1,667,742 - -0.4
1,667,749 + A4249_RS08300 0.11 -0.4
1,667,750 - A4249_RS08300 0.12 -2.0
1,667,750 - A4249_RS08300 0.12 -1.0
1,667,923 - +0.3
1,667,936 - -0.8
1,667,936 - +0.2
1,667,936 - -1.1
1,668,466 - -0.1
1,668,466 - -0.2
1,668,649 + A4249_RS08315 0.16 -0.2
1,668,650 - A4249_RS08315 0.16 +0.2
1,668,786 + A4249_RS08315 0.27 -0.1
1,668,786 + A4249_RS08315 0.27 -2.2
1,668,786 + A4249_RS08315 0.27 +0.0
1,668,787 - A4249_RS08315 0.27 +0.5
1,668,787 - A4249_RS08315 0.27 -0.4
1,668,787 - A4249_RS08315 0.27 -0.6
1,668,787 - A4249_RS08315 0.27 -0.1
1,668,897 - A4249_RS08315 0.37 -0.1
1,668,897 - A4249_RS08315 0.37 -0.9
1,669,020 + A4249_RS08315 0.48 +0.0
1,669,020 + A4249_RS08315 0.48 -1.3
1,669,021 - A4249_RS08315 0.48 -0.2
1,669,021 - A4249_RS08315 0.48 -0.1
1,669,021 - A4249_RS08315 0.48 +0.3
1,669,021 - A4249_RS08315 0.48 +0.8
1,669,021 - A4249_RS08315 0.48 -0.6
1,669,254 + A4249_RS08315 0.68 +1.0
1,669,254 + A4249_RS08315 0.68 +0.2
1,669,254 + A4249_RS08315 0.68 -1.0
1,669,254 + A4249_RS08315 0.68 -0.8
1,669,254 + A4249_RS08315 0.68 +0.1
1,669,255 - A4249_RS08315 0.68 -0.2
1,669,255 - A4249_RS08315 0.68 -0.3
1,669,255 - A4249_RS08315 0.68 -0.6
1,669,255 - A4249_RS08315 0.68 -0.4
1,669,255 - A4249_RS08315 0.68 -1.4
1,669,317 + A4249_RS08315 0.73 +0.3
1,669,318 - A4249_RS08315 0.73 -0.4
1,669,435 + A4249_RS08315 0.83 -0.5
1,669,436 - A4249_RS08315 0.83 -0.6
1,669,479 + A4249_RS08315 0.87 +0.3
1,669,479 + A4249_RS08315 0.87 -0.3
1,669,479 + A4249_RS08315 0.87 -0.0
1,669,480 - A4249_RS08315 0.87 -0.8
1,669,480 - A4249_RS08315 0.87 -0.5
1,669,480 - A4249_RS08315 0.87 +0.4
1,669,480 - A4249_RS08315 0.87 +0.3
1,669,480 - A4249_RS08315 0.87 +0.4
1,669,480 - A4249_RS08315 0.87 -0.4
1,669,480 - A4249_RS08315 0.87 -0.1
1,669,485 + A4249_RS08315 0.87 -0.2
1,669,485 + A4249_RS08315 0.87 -0.4
1,669,485 + A4249_RS08315 0.87 +0.5
1,669,485 + A4249_RS08315 0.87 -0.1
1,669,486 - A4249_RS08315 0.88 +0.1
1,669,486 - A4249_RS08315 0.88 -0.1
1,669,486 - A4249_RS08315 0.88 +0.0
1,669,486 - A4249_RS08315 0.88 +1.1
1,669,486 - A4249_RS08315 0.88 -0.9
1,669,518 + +0.7
1,669,518 + -0.6
1,669,533 + +0.0
1,669,533 + -0.3
1,669,533 + +0.7
1,669,533 + -0.1
1,669,533 + +0.7
1,669,534 - -0.9
1,669,534 - +0.0
1,669,631 - +1.0
1,669,631 - +0.1
1,669,631 - +0.5
1,669,631 - -0.2
1,669,743 + +0.7
1,669,920 + A4249_RS08320 0.20 +0.9
1,669,920 + A4249_RS08320 0.20 -0.3
1,669,921 - A4249_RS08320 0.20 +0.1
1,669,921 - A4249_RS08320 0.20 +1.2
1,669,999 + A4249_RS08320 0.26 +0.9
1,669,999 + A4249_RS08320 0.26 -0.1
1,669,999 + A4249_RS08320 0.26 +0.7
1,669,999 + A4249_RS08320 0.26 +0.1
1,669,999 + A4249_RS08320 0.26 +0.0
1,670,000 - A4249_RS08320 0.26 +0.4
1,670,000 - A4249_RS08320 0.26 +0.1
1,670,000 - A4249_RS08320 0.26 -0.2
1,670,000 - A4249_RS08320 0.26 +0.1
1,670,000 - A4249_RS08320 0.26 +1.0
1,670,078 + A4249_RS08320 0.32 +0.2
1,670,079 - A4249_RS08320 0.32 -0.3
1,670,079 - A4249_RS08320 0.32 -0.3
1,670,080 + A4249_RS08320 0.32 +0.8
1,670,080 + A4249_RS08320 0.32 +0.2
1,670,080 + A4249_RS08320 0.32 +0.6
1,670,081 - A4249_RS08320 0.32 +0.1
1,670,081 - A4249_RS08320 0.32 +0.1
1,670,081 - A4249_RS08320 0.32 +0.6
1,670,095 + A4249_RS08320 0.33 -0.5
1,670,095 + A4249_RS08320 0.33 +1.2
1,670,095 + A4249_RS08320 0.33 -0.0
1,670,095 + A4249_RS08320 0.33 -0.3
1,670,095 + A4249_RS08320 0.33 +0.3
1,670,096 - A4249_RS08320 0.33 +0.1
1,670,096 - A4249_RS08320 0.33 -0.0
1,670,096 - A4249_RS08320 0.33 +0.6
1,670,096 - A4249_RS08320 0.33 -0.3
1,670,096 - A4249_RS08320 0.33 -0.0
1,670,096 - A4249_RS08320 0.33 -0.4
1,670,096 - A4249_RS08320 0.33 +0.7
1,670,096 - A4249_RS08320 0.33 -0.1
1,670,266 + A4249_RS08320 0.45 -0.4
1,670,266 + A4249_RS08320 0.45 -0.2
1,670,266 + A4249_RS08320 0.45 +0.2
1,670,266 + A4249_RS08320 0.45 +0.6
1,670,267 - A4249_RS08320 0.45 +0.4
1,670,267 - A4249_RS08320 0.45 +0.6
1,670,267 - A4249_RS08320 0.45 +0.6
1,670,267 - A4249_RS08320 0.45 -0.7
1,670,267 - A4249_RS08320 0.45 -0.2
1,670,267 - A4249_RS08320 0.45 +0.1
1,670,335 + A4249_RS08320 0.50 +1.6
1,670,335 + A4249_RS08320 0.50 -1.5
1,670,336 - A4249_RS08320 0.50 -0.3
1,670,336 - A4249_RS08320 0.50 -0.7
1,670,336 - A4249_RS08320 0.50 -0.7
1,670,336 - A4249_RS08320 0.50 -0.3
1,670,336 - A4249_RS08320 0.50 +0.1
1,670,336 - A4249_RS08320 0.50 +0.0
1,670,584 + A4249_RS08320 0.68 -0.2
1,670,584 + A4249_RS08320 0.68 +1.4
1,670,584 + A4249_RS08320 0.68 +0.7
1,670,584 + A4249_RS08320 0.68 -1.9
1,670,585 - A4249_RS08320 0.68 +0.5
1,670,585 - A4249_RS08320 0.68 +0.9
1,670,585 - A4249_RS08320 0.68 -0.9
1,670,585 - A4249_RS08320 0.68 -0.4
1,670,585 - A4249_RS08320 0.68 -1.3

Or see this region's nucleotide sequence