Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS08270

Experiment: Adenine 0.74 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS08260 and A4249_RS08265 are separated by 45 nucleotidesA4249_RS08265 and A4249_RS08270 are separated by 72 nucleotidesA4249_RS08270 and A4249_RS08275 overlap by 29 nucleotides A4249_RS08260: A4249_RS08260 - NUDIX hydrolase, at 1,661,113 to 1,661,739 _RS08260 A4249_RS08265: A4249_RS08265 - nitroreductase, at 1,661,785 to 1,662,378 _RS08265 A4249_RS08270: A4249_RS08270 - DedA family protein, at 1,662,451 to 1,663,113 _RS08270 A4249_RS08275: A4249_RS08275 - DUF817 domain-containing protein, at 1,663,085 to 1,663,915 _RS08275 Position (kb) 1662 1663 1664Strain fitness (log2 ratio) -2 -1 0 1 2at 1661.489 kb on + strand, within A4249_RS08260at 1661.489 kb on + strand, within A4249_RS08260at 1661.489 kb on + strand, within A4249_RS08260at 1661.489 kb on + strand, within A4249_RS08260at 1661.489 kb on + strand, within A4249_RS08260at 1661.489 kb on + strand, within A4249_RS08260at 1661.489 kb on + strand, within A4249_RS08260at 1661.489 kb on + strand, within A4249_RS08260at 1661.489 kb on + strand, within A4249_RS08260at 1661.489 kb on + strand, within A4249_RS08260at 1661.490 kb on - strand, within A4249_RS08260at 1661.490 kb on - strand, within A4249_RS08260at 1661.490 kb on - strand, within A4249_RS08260at 1661.490 kb on - strand, within A4249_RS08260at 1661.490 kb on - strand, within A4249_RS08260at 1661.592 kb on - strand, within A4249_RS08260at 1661.592 kb on - strand, within A4249_RS08260at 1661.592 kb on - strand, within A4249_RS08260at 1661.592 kb on - strand, within A4249_RS08260at 1661.592 kb on - strand, within A4249_RS08260at 1661.749 kb on - strandat 1661.749 kb on - strandat 1661.749 kb on - strandat 1661.773 kb on + strandat 1661.773 kb on + strandat 1661.773 kb on + strandat 1661.773 kb on + strandat 1661.774 kb on - strandat 1661.774 kb on - strandat 1661.774 kb on - strandat 1661.774 kb on - strandat 1661.774 kb on - strandat 1661.777 kb on + strandat 1661.777 kb on + strandat 1661.778 kb on - strandat 1661.778 kb on - strandat 1662.232 kb on + strand, within A4249_RS08265at 1662.232 kb on + strand, within A4249_RS08265at 1662.233 kb on - strand, within A4249_RS08265at 1662.233 kb on - strand, within A4249_RS08265at 1662.233 kb on - strand, within A4249_RS08265at 1662.238 kb on + strand, within A4249_RS08265at 1662.238 kb on + strand, within A4249_RS08265at 1662.238 kb on + strand, within A4249_RS08265at 1662.238 kb on + strand, within A4249_RS08265at 1662.239 kb on - strand, within A4249_RS08265at 1662.239 kb on - strand, within A4249_RS08265at 1662.376 kb on + strandat 1662.389 kb on + strandat 1662.389 kb on + strandat 1662.389 kb on + strandat 1662.389 kb on + strandat 1662.389 kb on + strandat 1662.389 kb on + strandat 1662.389 kb on + strandat 1662.389 kb on + strandat 1662.389 kb on + strandat 1662.389 kb on + strandat 1662.389 kb on + strandat 1662.389 kb on + strandat 1662.389 kb on + strandat 1662.389 kb on + strandat 1662.389 kb on + strandat 1662.389 kb on + strandat 1662.389 kb on + strandat 1662.389 kb on + strandat 1662.390 kb on - strandat 1662.390 kb on - strandat 1662.390 kb on - strandat 1662.390 kb on - strandat 1662.390 kb on - strandat 1662.390 kb on - strandat 1662.390 kb on - strandat 1662.390 kb on - strandat 1662.390 kb on - strandat 1662.390 kb on - strandat 1662.400 kb on + strandat 1662.401 kb on - strandat 1662.401 kb on - strandat 1662.498 kb on + strandat 1662.498 kb on + strandat 1662.498 kb on + strandat 1662.498 kb on + strandat 1662.498 kb on + strandat 1662.498 kb on + strandat 1662.498 kb on + strandat 1662.498 kb on + strandat 1662.498 kb on + strandat 1662.498 kb on + strandat 1662.498 kb on + strandat 1662.499 kb on - strandat 1662.499 kb on - strandat 1662.499 kb on - strandat 1662.499 kb on - strandat 1662.499 kb on - strandat 1662.499 kb on - strandat 1662.499 kb on - strandat 1662.499 kb on - strandat 1662.499 kb on - strandat 1662.499 kb on - strandat 1662.682 kb on + strand, within A4249_RS08270at 1662.683 kb on - strand, within A4249_RS08270at 1662.708 kb on - strand, within A4249_RS08270at 1662.708 kb on - strand, within A4249_RS08270at 1662.769 kb on + strand, within A4249_RS08270at 1662.769 kb on + strand, within A4249_RS08270at 1662.769 kb on + strand, within A4249_RS08270at 1662.770 kb on - strand, within A4249_RS08270at 1662.770 kb on - strand, within A4249_RS08270at 1662.938 kb on - strand, within A4249_RS08270at 1663.045 kb on + strand, within A4249_RS08270at 1663.111 kb on + strandat 1663.111 kb on + strandat 1663.111 kb on + strandat 1663.111 kb on + strandat 1663.112 kb on - strandat 1663.281 kb on - strand, within A4249_RS08275at 1663.385 kb on + strand, within A4249_RS08275at 1663.385 kb on + strand, within A4249_RS08275at 1663.385 kb on + strand, within A4249_RS08275at 1663.385 kb on + strand, within A4249_RS08275at 1663.386 kb on - strand, within A4249_RS08275at 1663.386 kb on - strand, within A4249_RS08275at 1663.386 kb on - strand, within A4249_RS08275at 1663.386 kb on - strand, within A4249_RS08275at 1663.386 kb on - strand, within A4249_RS08275at 1663.434 kb on + strand, within A4249_RS08275at 1663.434 kb on + strand, within A4249_RS08275at 1663.434 kb on + strand, within A4249_RS08275at 1663.434 kb on + strand, within A4249_RS08275at 1663.434 kb on + strand, within A4249_RS08275at 1663.435 kb on - strand, within A4249_RS08275at 1663.435 kb on - strand, within A4249_RS08275at 1663.435 kb on - strand, within A4249_RS08275at 1663.435 kb on - strand, within A4249_RS08275at 1663.435 kb on - strand, within A4249_RS08275at 1663.435 kb on - strand, within A4249_RS08275at 1663.435 kb on - strand, within A4249_RS08275at 1663.476 kb on + strand, within A4249_RS08275at 1663.476 kb on + strand, within A4249_RS08275at 1663.477 kb on - strand, within A4249_RS08275at 1663.519 kb on + strand, within A4249_RS08275at 1663.519 kb on + strand, within A4249_RS08275at 1663.520 kb on - strand, within A4249_RS08275at 1663.521 kb on + strand, within A4249_RS08275at 1663.521 kb on + strand, within A4249_RS08275at 1663.521 kb on + strand, within A4249_RS08275at 1663.521 kb on + strand, within A4249_RS08275at 1663.521 kb on + strand, within A4249_RS08275at 1663.521 kb on + strand, within A4249_RS08275at 1663.521 kb on + strand, within A4249_RS08275at 1663.522 kb on - strand, within A4249_RS08275at 1663.522 kb on - strand, within A4249_RS08275at 1663.522 kb on - strand, within A4249_RS08275at 1663.522 kb on - strand, within A4249_RS08275at 1663.522 kb on - strand, within A4249_RS08275at 1663.522 kb on - strand, within A4249_RS08275at 1663.522 kb on - strand, within A4249_RS08275at 1663.522 kb on - strand, within A4249_RS08275at 1663.522 kb on - strand, within A4249_RS08275at 1663.522 kb on - strand, within A4249_RS08275at 1663.522 kb on - strand, within A4249_RS08275at 1663.539 kb on + strand, within A4249_RS08275at 1663.539 kb on + strand, within A4249_RS08275at 1663.539 kb on + strand, within A4249_RS08275at 1663.539 kb on + strand, within A4249_RS08275at 1663.539 kb on + strand, within A4249_RS08275at 1663.539 kb on + strand, within A4249_RS08275at 1663.539 kb on + strand, within A4249_RS08275at 1663.539 kb on + strand, within A4249_RS08275at 1663.540 kb on - strand, within A4249_RS08275at 1663.540 kb on - strand, within A4249_RS08275at 1663.540 kb on - strand, within A4249_RS08275at 1663.540 kb on - strand, within A4249_RS08275at 1663.540 kb on - strand, within A4249_RS08275at 1663.540 kb on - strand, within A4249_RS08275at 1663.540 kb on - strand, within A4249_RS08275at 1663.540 kb on - strand, within A4249_RS08275at 1663.540 kb on - strand, within A4249_RS08275at 1663.597 kb on - strand, within A4249_RS08275at 1663.597 kb on - strand, within A4249_RS08275at 1663.746 kb on + strand, within A4249_RS08275at 1663.747 kb on - strand, within A4249_RS08275at 1663.863 kb on + strandat 1663.863 kb on + strandat 1663.863 kb on + strandat 1663.863 kb on + strandat 1663.863 kb on + strandat 1663.864 kb on - strandat 1663.963 kb on + strandat 1663.963 kb on + strandat 1663.963 kb on + strandat 1663.964 kb on - strandat 1664.031 kb on + strandat 1664.031 kb on + strandat 1664.032 kb on - strandat 1664.088 kb on + strandat 1664.089 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine 0.74 mM (C)
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1,661,489 + A4249_RS08260 0.60 -0.3
1,661,489 + A4249_RS08260 0.60 -0.7
1,661,489 + A4249_RS08260 0.60 -0.6
1,661,489 + A4249_RS08260 0.60 +0.1
1,661,489 + A4249_RS08260 0.60 +0.5
1,661,489 + A4249_RS08260 0.60 -0.3
1,661,489 + A4249_RS08260 0.60 -0.1
1,661,489 + A4249_RS08260 0.60 +0.1
1,661,489 + A4249_RS08260 0.60 -0.4
1,661,489 + A4249_RS08260 0.60 -0.0
1,661,490 - A4249_RS08260 0.60 -0.2
1,661,490 - A4249_RS08260 0.60 -0.3
1,661,490 - A4249_RS08260 0.60 +0.3
1,661,490 - A4249_RS08260 0.60 -0.0
1,661,490 - A4249_RS08260 0.60 +0.1
1,661,592 - A4249_RS08260 0.76 +0.1
1,661,592 - A4249_RS08260 0.76 +0.4
1,661,592 - A4249_RS08260 0.76 +1.0
1,661,592 - A4249_RS08260 0.76 +0.3
1,661,592 - A4249_RS08260 0.76 +0.8
1,661,749 - -0.1
1,661,749 - -0.7
1,661,749 - +0.1
1,661,773 + -0.2
1,661,773 + +0.5
1,661,773 + -0.6
1,661,773 + -0.2
1,661,774 - -0.4
1,661,774 - +0.4
1,661,774 - -1.2
1,661,774 - -0.1
1,661,774 - -0.2
1,661,777 + +0.6
1,661,777 + -0.1
1,661,778 - +0.6
1,661,778 - +1.4
1,662,232 + A4249_RS08265 0.75 -0.1
1,662,232 + A4249_RS08265 0.75 -0.8
1,662,233 - A4249_RS08265 0.75 -0.8
1,662,233 - A4249_RS08265 0.75 -0.2
1,662,233 - A4249_RS08265 0.75 +0.6
1,662,238 + A4249_RS08265 0.76 +0.6
1,662,238 + A4249_RS08265 0.76 -0.7
1,662,238 + A4249_RS08265 0.76 +0.6
1,662,238 + A4249_RS08265 0.76 -1.6
1,662,239 - A4249_RS08265 0.76 -0.7
1,662,239 - A4249_RS08265 0.76 +1.0
1,662,376 + -0.7
1,662,389 + +0.3
1,662,389 + +1.1
1,662,389 + +0.9
1,662,389 + +1.3
1,662,389 + -0.1
1,662,389 + -0.4
1,662,389 + -0.3
1,662,389 + -0.4
1,662,389 + -0.7
1,662,389 + +0.4
1,662,389 + +0.1
1,662,389 + -0.7
1,662,389 + +0.4
1,662,389 + -0.3
1,662,389 + -0.0
1,662,389 + +0.2
1,662,389 + -1.3
1,662,389 + -1.3
1,662,390 - +0.1
1,662,390 - -0.5
1,662,390 - -0.9
1,662,390 - -0.4
1,662,390 - +1.4
1,662,390 - +1.1
1,662,390 - -0.2
1,662,390 - -0.3
1,662,390 - -0.9
1,662,390 - -0.8
1,662,400 + -1.1
1,662,401 - +0.1
1,662,401 - +0.8
1,662,498 + +0.6
1,662,498 + +0.6
1,662,498 + +0.3
1,662,498 + -0.3
1,662,498 + -0.5
1,662,498 + -0.4
1,662,498 + -0.5
1,662,498 + -0.1
1,662,498 + -0.9
1,662,498 + -2.4
1,662,498 + +0.1
1,662,499 - +0.8
1,662,499 - +0.2
1,662,499 - +0.1
1,662,499 - -0.6
1,662,499 - +0.8
1,662,499 - +0.9
1,662,499 - -0.7
1,662,499 - +0.3
1,662,499 - -0.3
1,662,499 - -0.5
1,662,682 + A4249_RS08270 0.35 -1.0
1,662,683 - A4249_RS08270 0.35 -0.7
1,662,708 - A4249_RS08270 0.39 +0.2
1,662,708 - A4249_RS08270 0.39 -0.0
1,662,769 + A4249_RS08270 0.48 +0.6
1,662,769 + A4249_RS08270 0.48 +0.4
1,662,769 + A4249_RS08270 0.48 +1.0
1,662,770 - A4249_RS08270 0.48 -0.3
1,662,770 - A4249_RS08270 0.48 -1.9
1,662,938 - A4249_RS08270 0.73 +2.3
1,663,045 + A4249_RS08270 0.90 +0.6
1,663,111 + +0.2
1,663,111 + -0.7
1,663,111 + +0.2
1,663,111 + +0.0
1,663,112 - +0.8
1,663,281 - A4249_RS08275 0.24 +0.2
1,663,385 + A4249_RS08275 0.36 -0.2
1,663,385 + A4249_RS08275 0.36 -0.5
1,663,385 + A4249_RS08275 0.36 -0.6
1,663,385 + A4249_RS08275 0.36 +0.7
1,663,386 - A4249_RS08275 0.36 +1.8
1,663,386 - A4249_RS08275 0.36 +0.0
1,663,386 - A4249_RS08275 0.36 +0.6
1,663,386 - A4249_RS08275 0.36 -0.8
1,663,386 - A4249_RS08275 0.36 +0.1
1,663,434 + A4249_RS08275 0.42 +0.5
1,663,434 + A4249_RS08275 0.42 -0.0
1,663,434 + A4249_RS08275 0.42 -2.2
1,663,434 + A4249_RS08275 0.42 +0.5
1,663,434 + A4249_RS08275 0.42 +0.1
1,663,435 - A4249_RS08275 0.42 -0.3
1,663,435 - A4249_RS08275 0.42 +0.9
1,663,435 - A4249_RS08275 0.42 -1.4
1,663,435 - A4249_RS08275 0.42 -0.1
1,663,435 - A4249_RS08275 0.42 -0.7
1,663,435 - A4249_RS08275 0.42 +0.2
1,663,435 - A4249_RS08275 0.42 -0.4
1,663,476 + A4249_RS08275 0.47 +0.4
1,663,476 + A4249_RS08275 0.47 -0.3
1,663,477 - A4249_RS08275 0.47 -0.4
1,663,519 + A4249_RS08275 0.52 +0.7
1,663,519 + A4249_RS08275 0.52 -0.5
1,663,520 - A4249_RS08275 0.52 +0.0
1,663,521 + A4249_RS08275 0.52 -0.3
1,663,521 + A4249_RS08275 0.52 -0.3
1,663,521 + A4249_RS08275 0.52 +0.9
1,663,521 + A4249_RS08275 0.52 -0.4
1,663,521 + A4249_RS08275 0.52 -0.5
1,663,521 + A4249_RS08275 0.52 -0.6
1,663,521 + A4249_RS08275 0.52 -1.2
1,663,522 - A4249_RS08275 0.53 +1.0
1,663,522 - A4249_RS08275 0.53 +0.0
1,663,522 - A4249_RS08275 0.53 +0.0
1,663,522 - A4249_RS08275 0.53 +0.1
1,663,522 - A4249_RS08275 0.53 +1.1
1,663,522 - A4249_RS08275 0.53 +0.6
1,663,522 - A4249_RS08275 0.53 -0.0
1,663,522 - A4249_RS08275 0.53 +0.4
1,663,522 - A4249_RS08275 0.53 +0.5
1,663,522 - A4249_RS08275 0.53 -0.4
1,663,522 - A4249_RS08275 0.53 +0.5
1,663,539 + A4249_RS08275 0.55 +0.1
1,663,539 + A4249_RS08275 0.55 -0.1
1,663,539 + A4249_RS08275 0.55 +0.0
1,663,539 + A4249_RS08275 0.55 +0.1
1,663,539 + A4249_RS08275 0.55 +0.1
1,663,539 + A4249_RS08275 0.55 +0.3
1,663,539 + A4249_RS08275 0.55 +0.4
1,663,539 + A4249_RS08275 0.55 +0.5
1,663,540 - A4249_RS08275 0.55 +0.2
1,663,540 - A4249_RS08275 0.55 +0.7
1,663,540 - A4249_RS08275 0.55 +0.1
1,663,540 - A4249_RS08275 0.55 -0.2
1,663,540 - A4249_RS08275 0.55 +0.8
1,663,540 - A4249_RS08275 0.55 -0.6
1,663,540 - A4249_RS08275 0.55 -0.3
1,663,540 - A4249_RS08275 0.55 -0.6
1,663,540 - A4249_RS08275 0.55 -0.1
1,663,597 - A4249_RS08275 0.62 +0.8
1,663,597 - A4249_RS08275 0.62 +1.3
1,663,746 + A4249_RS08275 0.80 -1.2
1,663,747 - A4249_RS08275 0.80 -0.4
1,663,863 + +0.2
1,663,863 + -0.5
1,663,863 + -0.5
1,663,863 + +0.3
1,663,863 + +0.2
1,663,864 - +1.0
1,663,963 + +0.0
1,663,963 + -0.6
1,663,963 + +0.2
1,663,964 - +0.3
1,664,031 + +0.7
1,664,031 + -0.7
1,664,032 - -0.2
1,664,088 + +0.1
1,664,089 - -0.0

Or see this region's nucleotide sequence