Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS08255

Experiment: Adenine 0.74 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS08240 and A4249_RS08245 overlap by 4 nucleotidesA4249_RS08245 and A4249_RS08250 are separated by 50 nucleotidesA4249_RS08250 and A4249_RS08255 are separated by 65 nucleotidesA4249_RS08255 and A4249_RS08260 are separated by 20 nucleotidesA4249_RS08260 and A4249_RS08265 are separated by 45 nucleotides A4249_RS08240: A4249_RS08240 - ABC-F family ATP-binding cassette domain-containing protein, at 1,657,802 to 1,659,691 _RS08240 A4249_RS08245: A4249_RS08245 - DUF2164 domain-containing protein, at 1,659,688 to 1,659,939 _RS08245 A4249_RS08250: A4249_RS08250 - DUF3126 family protein, at 1,659,990 to 1,660,199 _RS08250 A4249_RS08255: A4249_RS08255 - serine O-acetyltransferase, at 1,660,265 to 1,661,092 _RS08255 A4249_RS08260: A4249_RS08260 - NUDIX hydrolase, at 1,661,113 to 1,661,739 _RS08260 A4249_RS08265: A4249_RS08265 - nitroreductase, at 1,661,785 to 1,662,378 _RS08265 Position (kb) 1660 1661 1662Strain fitness (log2 ratio) -3 -2 -1 0 1at 1659.339 kb on - strand, within A4249_RS08240at 1659.339 kb on - strand, within A4249_RS08240at 1659.748 kb on + strand, within A4249_RS08245at 1659.748 kb on + strand, within A4249_RS08245at 1659.749 kb on - strand, within A4249_RS08245at 1659.749 kb on - strand, within A4249_RS08245at 1659.749 kb on - strand, within A4249_RS08245at 1659.749 kb on - strand, within A4249_RS08245at 1659.838 kb on + strand, within A4249_RS08245at 1659.838 kb on + strand, within A4249_RS08245at 1659.838 kb on + strand, within A4249_RS08245at 1659.838 kb on + strand, within A4249_RS08245at 1659.838 kb on + strand, within A4249_RS08245at 1659.839 kb on - strand, within A4249_RS08245at 1659.839 kb on - strand, within A4249_RS08245at 1659.839 kb on - strand, within A4249_RS08245at 1659.839 kb on - strand, within A4249_RS08245at 1659.839 kb on - strand, within A4249_RS08245at 1660.090 kb on + strand, within A4249_RS08250at 1660.090 kb on + strand, within A4249_RS08250at 1660.090 kb on + strand, within A4249_RS08250at 1660.090 kb on + strand, within A4249_RS08250at 1660.090 kb on + strand, within A4249_RS08250at 1660.090 kb on + strand, within A4249_RS08250at 1660.090 kb on + strand, within A4249_RS08250at 1660.090 kb on + strand, within A4249_RS08250at 1660.090 kb on + strand, within A4249_RS08250at 1660.090 kb on + strand, within A4249_RS08250at 1660.091 kb on - strand, within A4249_RS08250at 1660.091 kb on - strand, within A4249_RS08250at 1660.091 kb on - strand, within A4249_RS08250at 1660.091 kb on - strand, within A4249_RS08250at 1660.091 kb on - strand, within A4249_RS08250at 1660.091 kb on - strand, within A4249_RS08250at 1660.091 kb on - strand, within A4249_RS08250at 1660.281 kb on + strandat 1660.281 kb on + strandat 1660.282 kb on - strandat 1660.282 kb on - strandat 1660.426 kb on - strand, within A4249_RS08255at 1660.426 kb on - strand, within A4249_RS08255at 1660.440 kb on - strand, within A4249_RS08255at 1660.441 kb on + strand, within A4249_RS08255at 1660.441 kb on + strand, within A4249_RS08255at 1660.441 kb on + strand, within A4249_RS08255at 1660.442 kb on - strand, within A4249_RS08255at 1660.764 kb on + strand, within A4249_RS08255at 1661.116 kb on + strandat 1661.116 kb on + strandat 1661.116 kb on + strandat 1661.116 kb on + strandat 1661.116 kb on + strandat 1661.117 kb on - strandat 1661.117 kb on - strandat 1661.117 kb on - strandat 1661.117 kb on - strandat 1661.172 kb on + strandat 1661.172 kb on + strandat 1661.172 kb on + strandat 1661.172 kb on + strandat 1661.172 kb on + strandat 1661.173 kb on - strandat 1661.173 kb on - strandat 1661.173 kb on - strandat 1661.177 kb on + strand, within A4249_RS08260at 1661.177 kb on + strand, within A4249_RS08260at 1661.177 kb on + strand, within A4249_RS08260at 1661.177 kb on + strand, within A4249_RS08260at 1661.177 kb on + strand, within A4249_RS08260at 1661.177 kb on + strand, within A4249_RS08260at 1661.177 kb on + strand, within A4249_RS08260at 1661.178 kb on - strand, within A4249_RS08260at 1661.178 kb on - strand, within A4249_RS08260at 1661.178 kb on - strand, within A4249_RS08260at 1661.178 kb on - strand, within A4249_RS08260at 1661.178 kb on - strand, within A4249_RS08260at 1661.178 kb on - strand, within A4249_RS08260at 1661.186 kb on + strand, within A4249_RS08260at 1661.186 kb on + strand, within A4249_RS08260at 1661.186 kb on + strand, within A4249_RS08260at 1661.186 kb on + strand, within A4249_RS08260at 1661.186 kb on + strand, within A4249_RS08260at 1661.186 kb on + strand, within A4249_RS08260at 1661.187 kb on - strand, within A4249_RS08260at 1661.187 kb on - strand, within A4249_RS08260at 1661.187 kb on - strand, within A4249_RS08260at 1661.187 kb on - strand, within A4249_RS08260at 1661.187 kb on - strand, within A4249_RS08260at 1661.187 kb on - strand, within A4249_RS08260at 1661.187 kb on - strand, within A4249_RS08260at 1661.489 kb on + strand, within A4249_RS08260at 1661.489 kb on + strand, within A4249_RS08260at 1661.489 kb on + strand, within A4249_RS08260at 1661.489 kb on + strand, within A4249_RS08260at 1661.489 kb on + strand, within A4249_RS08260at 1661.489 kb on + strand, within A4249_RS08260at 1661.489 kb on + strand, within A4249_RS08260at 1661.489 kb on + strand, within A4249_RS08260at 1661.489 kb on + strand, within A4249_RS08260at 1661.489 kb on + strand, within A4249_RS08260at 1661.490 kb on - strand, within A4249_RS08260at 1661.490 kb on - strand, within A4249_RS08260at 1661.490 kb on - strand, within A4249_RS08260at 1661.490 kb on - strand, within A4249_RS08260at 1661.490 kb on - strand, within A4249_RS08260at 1661.592 kb on - strand, within A4249_RS08260at 1661.592 kb on - strand, within A4249_RS08260at 1661.592 kb on - strand, within A4249_RS08260at 1661.592 kb on - strand, within A4249_RS08260at 1661.592 kb on - strand, within A4249_RS08260at 1661.749 kb on - strandat 1661.749 kb on - strandat 1661.749 kb on - strandat 1661.773 kb on + strandat 1661.773 kb on + strandat 1661.773 kb on + strandat 1661.773 kb on + strandat 1661.774 kb on - strandat 1661.774 kb on - strandat 1661.774 kb on - strandat 1661.774 kb on - strandat 1661.774 kb on - strandat 1661.777 kb on + strandat 1661.777 kb on + strandat 1661.778 kb on - strandat 1661.778 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine 0.74 mM (C)
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1,659,339 - A4249_RS08240 0.81 +0.5
1,659,339 - A4249_RS08240 0.81 -0.4
1,659,748 + A4249_RS08245 0.24 -0.4
1,659,748 + A4249_RS08245 0.24 -0.3
1,659,749 - A4249_RS08245 0.24 +0.1
1,659,749 - A4249_RS08245 0.24 +0.1
1,659,749 - A4249_RS08245 0.24 +0.8
1,659,749 - A4249_RS08245 0.24 -0.7
1,659,838 + A4249_RS08245 0.60 -0.2
1,659,838 + A4249_RS08245 0.60 +1.6
1,659,838 + A4249_RS08245 0.60 -0.3
1,659,838 + A4249_RS08245 0.60 +0.4
1,659,838 + A4249_RS08245 0.60 +0.3
1,659,839 - A4249_RS08245 0.60 +0.1
1,659,839 - A4249_RS08245 0.60 -1.0
1,659,839 - A4249_RS08245 0.60 -0.3
1,659,839 - A4249_RS08245 0.60 +0.7
1,659,839 - A4249_RS08245 0.60 +0.7
1,660,090 + A4249_RS08250 0.48 -0.5
1,660,090 + A4249_RS08250 0.48 -0.2
1,660,090 + A4249_RS08250 0.48 -0.3
1,660,090 + A4249_RS08250 0.48 -0.5
1,660,090 + A4249_RS08250 0.48 -0.4
1,660,090 + A4249_RS08250 0.48 -0.2
1,660,090 + A4249_RS08250 0.48 -0.4
1,660,090 + A4249_RS08250 0.48 -0.1
1,660,090 + A4249_RS08250 0.48 -0.4
1,660,090 + A4249_RS08250 0.48 -0.1
1,660,091 - A4249_RS08250 0.48 -0.1
1,660,091 - A4249_RS08250 0.48 -0.3
1,660,091 - A4249_RS08250 0.48 -0.6
1,660,091 - A4249_RS08250 0.48 -0.2
1,660,091 - A4249_RS08250 0.48 +0.1
1,660,091 - A4249_RS08250 0.48 -0.2
1,660,091 - A4249_RS08250 0.48 -0.0
1,660,281 + -0.3
1,660,281 + -1.0
1,660,282 - +0.2
1,660,282 - -0.3
1,660,426 - A4249_RS08255 0.19 -1.4
1,660,426 - A4249_RS08255 0.19 -0.3
1,660,440 - A4249_RS08255 0.21 -2.1
1,660,441 + A4249_RS08255 0.21 +0.6
1,660,441 + A4249_RS08255 0.21 -1.6
1,660,441 + A4249_RS08255 0.21 +0.0
1,660,442 - A4249_RS08255 0.21 -0.8
1,660,764 + A4249_RS08255 0.60 -0.0
1,661,116 + +0.6
1,661,116 + +0.6
1,661,116 + -0.3
1,661,116 + +0.0
1,661,116 + -1.2
1,661,117 - +0.5
1,661,117 - +0.8
1,661,117 - +1.0
1,661,117 - -0.4
1,661,172 + -0.5
1,661,172 + -1.8
1,661,172 + -3.1
1,661,172 + -0.4
1,661,172 + -0.2
1,661,173 - +0.0
1,661,173 - +0.9
1,661,173 - -1.1
1,661,177 + A4249_RS08260 0.10 +0.4
1,661,177 + A4249_RS08260 0.10 +0.2
1,661,177 + A4249_RS08260 0.10 -0.7
1,661,177 + A4249_RS08260 0.10 -0.9
1,661,177 + A4249_RS08260 0.10 -0.1
1,661,177 + A4249_RS08260 0.10 -0.5
1,661,177 + A4249_RS08260 0.10 +1.2
1,661,178 - A4249_RS08260 0.10 +0.7
1,661,178 - A4249_RS08260 0.10 -0.2
1,661,178 - A4249_RS08260 0.10 -0.1
1,661,178 - A4249_RS08260 0.10 -0.4
1,661,178 - A4249_RS08260 0.10 +0.9
1,661,178 - A4249_RS08260 0.10 +1.6
1,661,186 + A4249_RS08260 0.12 +0.6
1,661,186 + A4249_RS08260 0.12 +0.3
1,661,186 + A4249_RS08260 0.12 -1.2
1,661,186 + A4249_RS08260 0.12 -0.9
1,661,186 + A4249_RS08260 0.12 +0.1
1,661,186 + A4249_RS08260 0.12 +0.2
1,661,187 - A4249_RS08260 0.12 +0.5
1,661,187 - A4249_RS08260 0.12 -1.3
1,661,187 - A4249_RS08260 0.12 -0.3
1,661,187 - A4249_RS08260 0.12 +0.5
1,661,187 - A4249_RS08260 0.12 -1.0
1,661,187 - A4249_RS08260 0.12 -0.6
1,661,187 - A4249_RS08260 0.12 +0.2
1,661,489 + A4249_RS08260 0.60 -0.3
1,661,489 + A4249_RS08260 0.60 -0.7
1,661,489 + A4249_RS08260 0.60 -0.6
1,661,489 + A4249_RS08260 0.60 +0.1
1,661,489 + A4249_RS08260 0.60 +0.5
1,661,489 + A4249_RS08260 0.60 -0.3
1,661,489 + A4249_RS08260 0.60 -0.1
1,661,489 + A4249_RS08260 0.60 +0.1
1,661,489 + A4249_RS08260 0.60 -0.4
1,661,489 + A4249_RS08260 0.60 -0.0
1,661,490 - A4249_RS08260 0.60 -0.2
1,661,490 - A4249_RS08260 0.60 -0.3
1,661,490 - A4249_RS08260 0.60 +0.3
1,661,490 - A4249_RS08260 0.60 -0.0
1,661,490 - A4249_RS08260 0.60 +0.1
1,661,592 - A4249_RS08260 0.76 +0.1
1,661,592 - A4249_RS08260 0.76 +0.4
1,661,592 - A4249_RS08260 0.76 +1.0
1,661,592 - A4249_RS08260 0.76 +0.3
1,661,592 - A4249_RS08260 0.76 +0.8
1,661,749 - -0.1
1,661,749 - -0.7
1,661,749 - +0.1
1,661,773 + -0.2
1,661,773 + +0.5
1,661,773 + -0.6
1,661,773 + -0.2
1,661,774 - -0.4
1,661,774 - +0.4
1,661,774 - -1.2
1,661,774 - -0.1
1,661,774 - -0.2
1,661,777 + +0.6
1,661,777 + -0.1
1,661,778 - +0.6
1,661,778 - +1.4

Or see this region's nucleotide sequence