Experiment: Adenine 0.74 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt A4249_RS07980 and A4249_RS07985 overlap by 4 nucleotides A4249_RS07985 and A4249_RS07990 are separated by 0 nucleotides A4249_RS07990 and A4249_RS07995 are separated by 350 nucleotides A4249_RS07995 and A4249_RS08000 are separated by 46 nucleotides A4249_RS08000 and A4249_RS08005 are separated by 3 nucleotides
A4249_RS07980: A4249_RS07980 - type II toxin-antitoxin system prevent-host-death family antitoxin, at 1,599,109 to 1,599,354
_RS07980
A4249_RS07985: A4249_RS07985 - type II toxin-antitoxin system VapC family toxin, at 1,599,351 to 1,599,737
_RS07985
A4249_RS07990: A4249_RS07990 - sulfur carrier protein ThiS, at 1,599,738 to 1,599,938
_RS07990
A4249_RS07995: A4249_RS07995 - type II 3-dehydroquinate dehydratase, at 1,600,289 to 1,600,735
_RS07995
A4249_RS08000: A4249_RS08000 - acetyl-CoA carboxylase biotin carboxyl carrier protein, at 1,600,782 to 1,601,273
_RS08000
A4249_RS08005: A4249_RS08005 - acetyl-CoA carboxylase biotin carboxylase subunit, at 1,601,277 to 1,602,629
_RS08005
Position (kb)
1600
1601 Strain fitness (log2 ratio)
-1
0
1 at 1599.364 kb on + strand at 1599.364 kb on + strand at 1599.364 kb on + strand at 1599.364 kb on + strand at 1599.364 kb on + strand at 1599.365 kb on - strand at 1599.365 kb on - strand at 1599.365 kb on - strand at 1599.368 kb on + strand at 1599.368 kb on + strand at 1599.368 kb on + strand at 1599.368 kb on + strand at 1599.368 kb on + strand at 1599.368 kb on + strand at 1599.368 kb on + strand at 1599.369 kb on - strand at 1599.369 kb on - strand at 1599.369 kb on - strand at 1599.369 kb on - strand at 1599.369 kb on - strand at 1599.369 kb on - strand at 1599.475 kb on + strand, within A4249_RS07985 at 1599.476 kb on - strand, within A4249_RS07985 at 1599.543 kb on + strand, within A4249_RS07985 at 1599.543 kb on + strand, within A4249_RS07985 at 1599.544 kb on - strand, within A4249_RS07985 at 1599.544 kb on - strand, within A4249_RS07985 at 1599.565 kb on - strand, within A4249_RS07985 at 1599.650 kb on - strand, within A4249_RS07985 at 1599.711 kb on + strand at 1599.711 kb on + strand at 1599.711 kb on + strand at 1599.712 kb on - strand at 1599.712 kb on - strand at 1599.712 kb on - strand at 1599.984 kb on + strand at 1599.984 kb on + strand at 1599.984 kb on + strand at 1599.985 kb on - strand at 1599.985 kb on - strand at 1600.188 kb on + strand at 1600.188 kb on + strand at 1600.188 kb on + strand at 1600.188 kb on + strand at 1600.188 kb on + strand at 1600.189 kb on - strand at 1600.189 kb on - strand at 1600.242 kb on + strand at 1600.364 kb on + strand, within A4249_RS07995 at 1600.364 kb on + strand, within A4249_RS07995 at 1600.364 kb on + strand, within A4249_RS07995 at 1600.531 kb on + strand, within A4249_RS07995 at 1600.634 kb on + strand, within A4249_RS07995 at 1600.634 kb on + strand, within A4249_RS07995 at 1600.634 kb on + strand, within A4249_RS07995
Per-strain Table
Position Strand Gene LocusTag Fraction Adenine 0.74 mM (C) remove 1,599,364 + -0.4 1,599,364 + -0.1 1,599,364 + +0.4 1,599,364 + -0.2 1,599,364 + -0.0 1,599,365 - -0.0 1,599,365 - -0.7 1,599,365 - -0.4 1,599,368 + -0.8 1,599,368 + +0.1 1,599,368 + +0.3 1,599,368 + -0.1 1,599,368 + -0.5 1,599,368 + +0.6 1,599,368 + +1.0 1,599,369 - -0.3 1,599,369 - -0.9 1,599,369 - -0.3 1,599,369 - +0.6 1,599,369 - -1.4 1,599,369 - -0.3 1,599,475 + A4249_RS07985 0.32 +0.4 1,599,476 - A4249_RS07985 0.32 -0.6 1,599,543 + A4249_RS07985 0.50 -0.7 1,599,543 + A4249_RS07985 0.50 +0.1 1,599,544 - A4249_RS07985 0.50 -0.0 1,599,544 - A4249_RS07985 0.50 -0.2 1,599,565 - A4249_RS07985 0.55 +0.0 1,599,650 - A4249_RS07985 0.77 -0.2 1,599,711 + -0.4 1,599,711 + -0.1 1,599,711 + -0.6 1,599,712 - -0.4 1,599,712 - -0.6 1,599,712 - +0.4 1,599,984 + -0.9 1,599,984 + +1.4 1,599,984 + -0.5 1,599,985 - -0.3 1,599,985 - -0.4 1,600,188 + +0.6 1,600,188 + +0.7 1,600,188 + -0.5 1,600,188 + +0.1 1,600,188 + -0.5 1,600,189 - -0.8 1,600,189 - +0.2 1,600,242 + +0.0 1,600,364 + A4249_RS07995 0.17 +0.3 1,600,364 + A4249_RS07995 0.17 +0.3 1,600,364 + A4249_RS07995 0.17 +0.3 1,600,531 + A4249_RS07995 0.54 -0.3 1,600,634 + A4249_RS07995 0.77 +0.5 1,600,634 + A4249_RS07995 0.77 +0.1 1,600,634 + A4249_RS07995 0.77 -0.5
Or see this region's nucleotide sequence