Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS06545

Experiment: Adenine 0.74 mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntA4249_RS06540 and A4249_RS06545 are separated by 108 nucleotidesA4249_RS06545 and A4249_RS06550 are separated by 40 nucleotidesA4249_RS06550 and A4249_RS06555 are separated by 15 nucleotidesA4249_RS06555 and A4249_RS06560 overlap by 1 nucleotides A4249_RS06540: A4249_RS06540 - S9 family peptidase, at 1,331,974 to 1,334,223 _RS06540 A4249_RS06545: A4249_RS06545 - ferredoxin--NADP reductase, at 1,334,332 to 1,335,147 _RS06545 A4249_RS06550: A4249_RS06550 - chorismate mutase, at 1,335,188 to 1,335,520 _RS06550 A4249_RS06555: A4249_RS06555 - Hpt domain-containing protein, at 1,335,536 to 1,335,889 _RS06555 A4249_RS06560: A4249_RS06560 - amino acid permease, at 1,335,889 to 1,337,301 _RS06560 Position (kb) 1334 1335 1336Strain fitness (log2 ratio) -1 0 1at 1333.364 kb on + strand, within A4249_RS06540at 1333.364 kb on + strand, within A4249_RS06540at 1333.364 kb on + strand, within A4249_RS06540at 1333.364 kb on + strand, within A4249_RS06540at 1333.364 kb on + strand, within A4249_RS06540at 1333.364 kb on + strand, within A4249_RS06540at 1333.364 kb on + strand, within A4249_RS06540at 1333.365 kb on - strand, within A4249_RS06540at 1333.365 kb on - strand, within A4249_RS06540at 1333.365 kb on - strand, within A4249_RS06540at 1333.365 kb on - strand, within A4249_RS06540at 1333.365 kb on - strand, within A4249_RS06540at 1333.365 kb on - strand, within A4249_RS06540at 1333.365 kb on - strand, within A4249_RS06540at 1333.365 kb on - strand, within A4249_RS06540at 1333.365 kb on - strand, within A4249_RS06540at 1333.427 kb on + strand, within A4249_RS06540at 1333.427 kb on + strand, within A4249_RS06540at 1333.427 kb on + strand, within A4249_RS06540at 1333.427 kb on + strand, within A4249_RS06540at 1333.427 kb on + strand, within A4249_RS06540at 1333.428 kb on - strand, within A4249_RS06540at 1333.428 kb on - strand, within A4249_RS06540at 1333.428 kb on - strand, within A4249_RS06540at 1333.428 kb on - strand, within A4249_RS06540at 1333.428 kb on - strand, within A4249_RS06540at 1333.559 kb on + strand, within A4249_RS06540at 1333.559 kb on + strand, within A4249_RS06540at 1333.559 kb on + strand, within A4249_RS06540at 1333.559 kb on + strand, within A4249_RS06540at 1333.560 kb on - strand, within A4249_RS06540at 1333.560 kb on - strand, within A4249_RS06540at 1333.560 kb on - strand, within A4249_RS06540at 1333.560 kb on - strand, within A4249_RS06540at 1333.560 kb on - strand, within A4249_RS06540at 1333.560 kb on - strand, within A4249_RS06540at 1333.694 kb on + strand, within A4249_RS06540at 1333.694 kb on + strand, within A4249_RS06540at 1333.694 kb on + strand, within A4249_RS06540at 1333.695 kb on - strand, within A4249_RS06540at 1333.695 kb on - strand, within A4249_RS06540at 1333.695 kb on - strand, within A4249_RS06540at 1333.695 kb on - strand, within A4249_RS06540at 1333.695 kb on - strand, within A4249_RS06540at 1333.695 kb on - strand, within A4249_RS06540at 1333.695 kb on - strand, within A4249_RS06540at 1333.695 kb on - strand, within A4249_RS06540at 1333.695 kb on - strand, within A4249_RS06540at 1333.695 kb on - strand, within A4249_RS06540at 1333.721 kb on + strand, within A4249_RS06540at 1333.721 kb on + strand, within A4249_RS06540at 1333.722 kb on - strand, within A4249_RS06540at 1333.722 kb on - strand, within A4249_RS06540at 1333.722 kb on - strand, within A4249_RS06540at 1333.722 kb on - strand, within A4249_RS06540at 1333.722 kb on - strand, within A4249_RS06540at 1333.730 kb on + strand, within A4249_RS06540at 1333.730 kb on + strand, within A4249_RS06540at 1333.730 kb on + strand, within A4249_RS06540at 1333.731 kb on - strand, within A4249_RS06540at 1333.731 kb on - strand, within A4249_RS06540at 1333.731 kb on - strand, within A4249_RS06540at 1333.731 kb on - strand, within A4249_RS06540at 1333.731 kb on - strand, within A4249_RS06540at 1333.850 kb on + strand, within A4249_RS06540at 1333.850 kb on + strand, within A4249_RS06540at 1333.850 kb on + strand, within A4249_RS06540at 1333.851 kb on - strand, within A4249_RS06540at 1333.851 kb on - strand, within A4249_RS06540at 1333.851 kb on - strand, within A4249_RS06540at 1333.851 kb on - strand, within A4249_RS06540at 1333.874 kb on + strand, within A4249_RS06540at 1333.875 kb on - strand, within A4249_RS06540at 1333.875 kb on - strand, within A4249_RS06540at 1333.982 kb on + strand, within A4249_RS06540at 1333.982 kb on + strand, within A4249_RS06540at 1333.982 kb on + strand, within A4249_RS06540at 1333.982 kb on + strand, within A4249_RS06540at 1333.983 kb on - strand, within A4249_RS06540at 1333.983 kb on - strand, within A4249_RS06540at 1333.983 kb on - strand, within A4249_RS06540at 1333.983 kb on - strand, within A4249_RS06540at 1335.320 kb on + strand, within A4249_RS06550at 1335.320 kb on + strand, within A4249_RS06550at 1335.320 kb on + strand, within A4249_RS06550at 1335.320 kb on + strand, within A4249_RS06550at 1335.320 kb on + strand, within A4249_RS06550at 1335.321 kb on - strand, within A4249_RS06550at 1335.321 kb on - strand, within A4249_RS06550at 1335.321 kb on - strand, within A4249_RS06550at 1335.321 kb on - strand, within A4249_RS06550at 1335.321 kb on - strand, within A4249_RS06550at 1335.321 kb on - strand, within A4249_RS06550at 1335.500 kb on + strandat 1335.501 kb on - strandat 1335.501 kb on - strandat 1335.537 kb on + strandat 1335.537 kb on + strandat 1335.537 kb on + strandat 1335.538 kb on - strandat 1335.538 kb on - strandat 1335.538 kb on - strandat 1335.573 kb on + strand, within A4249_RS06555at 1335.721 kb on + strand, within A4249_RS06555at 1335.721 kb on + strand, within A4249_RS06555at 1335.722 kb on - strand, within A4249_RS06555at 1335.722 kb on - strand, within A4249_RS06555at 1335.722 kb on - strand, within A4249_RS06555at 1335.722 kb on - strand, within A4249_RS06555at 1335.722 kb on - strand, within A4249_RS06555at 1335.722 kb on - strand, within A4249_RS06555at 1335.722 kb on - strand, within A4249_RS06555at 1335.947 kb on + strandat 1335.947 kb on + strandat 1335.947 kb on + strandat 1335.947 kb on + strandat 1335.947 kb on + strandat 1335.948 kb on - strandat 1335.948 kb on - strandat 1335.948 kb on - strandat 1335.948 kb on - strandat 1335.948 kb on - strandat 1335.948 kb on - strandat 1335.948 kb on - strandat 1335.948 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Adenine 0.74 mM (C)
remove
1,333,364 + A4249_RS06540 0.62 +0.2
1,333,364 + A4249_RS06540 0.62 -0.9
1,333,364 + A4249_RS06540 0.62 -0.2
1,333,364 + A4249_RS06540 0.62 -0.9
1,333,364 + A4249_RS06540 0.62 -0.2
1,333,364 + A4249_RS06540 0.62 -0.5
1,333,364 + A4249_RS06540 0.62 +1.4
1,333,365 - A4249_RS06540 0.62 -0.4
1,333,365 - A4249_RS06540 0.62 +0.0
1,333,365 - A4249_RS06540 0.62 -0.1
1,333,365 - A4249_RS06540 0.62 -0.3
1,333,365 - A4249_RS06540 0.62 -0.8
1,333,365 - A4249_RS06540 0.62 +0.1
1,333,365 - A4249_RS06540 0.62 -0.5
1,333,365 - A4249_RS06540 0.62 +1.2
1,333,365 - A4249_RS06540 0.62 -0.0
1,333,427 + A4249_RS06540 0.65 +0.3
1,333,427 + A4249_RS06540 0.65 +0.1
1,333,427 + A4249_RS06540 0.65 -1.2
1,333,427 + A4249_RS06540 0.65 +0.2
1,333,427 + A4249_RS06540 0.65 +1.6
1,333,428 - A4249_RS06540 0.65 -0.7
1,333,428 - A4249_RS06540 0.65 -0.8
1,333,428 - A4249_RS06540 0.65 -0.2
1,333,428 - A4249_RS06540 0.65 -0.4
1,333,428 - A4249_RS06540 0.65 -0.1
1,333,559 + A4249_RS06540 0.70 +0.3
1,333,559 + A4249_RS06540 0.70 -0.1
1,333,559 + A4249_RS06540 0.70 -0.3
1,333,559 + A4249_RS06540 0.70 +0.3
1,333,560 - A4249_RS06540 0.70 +0.3
1,333,560 - A4249_RS06540 0.70 -0.3
1,333,560 - A4249_RS06540 0.70 -1.0
1,333,560 - A4249_RS06540 0.70 -0.6
1,333,560 - A4249_RS06540 0.70 -0.4
1,333,560 - A4249_RS06540 0.70 -0.5
1,333,694 + A4249_RS06540 0.76 -0.6
1,333,694 + A4249_RS06540 0.76 -0.9
1,333,694 + A4249_RS06540 0.76 -0.9
1,333,695 - A4249_RS06540 0.76 +0.8
1,333,695 - A4249_RS06540 0.76 -0.1
1,333,695 - A4249_RS06540 0.76 +0.2
1,333,695 - A4249_RS06540 0.76 -0.3
1,333,695 - A4249_RS06540 0.76 -0.3
1,333,695 - A4249_RS06540 0.76 -0.5
1,333,695 - A4249_RS06540 0.76 +0.2
1,333,695 - A4249_RS06540 0.76 +0.0
1,333,695 - A4249_RS06540 0.76 +1.3
1,333,695 - A4249_RS06540 0.76 -0.0
1,333,721 + A4249_RS06540 0.78 -1.1
1,333,721 + A4249_RS06540 0.78 +0.1
1,333,722 - A4249_RS06540 0.78 -0.3
1,333,722 - A4249_RS06540 0.78 -1.5
1,333,722 - A4249_RS06540 0.78 +0.2
1,333,722 - A4249_RS06540 0.78 -0.1
1,333,722 - A4249_RS06540 0.78 -0.3
1,333,730 + A4249_RS06540 0.78 +0.5
1,333,730 + A4249_RS06540 0.78 -0.5
1,333,730 + A4249_RS06540 0.78 -1.0
1,333,731 - A4249_RS06540 0.78 +0.5
1,333,731 - A4249_RS06540 0.78 -0.4
1,333,731 - A4249_RS06540 0.78 -0.3
1,333,731 - A4249_RS06540 0.78 +0.4
1,333,731 - A4249_RS06540 0.78 -0.3
1,333,850 + A4249_RS06540 0.83 -1.3
1,333,850 + A4249_RS06540 0.83 +0.3
1,333,850 + A4249_RS06540 0.83 -0.4
1,333,851 - A4249_RS06540 0.83 -0.3
1,333,851 - A4249_RS06540 0.83 -0.5
1,333,851 - A4249_RS06540 0.83 -0.8
1,333,851 - A4249_RS06540 0.83 +0.1
1,333,874 + A4249_RS06540 0.84 -0.3
1,333,875 - A4249_RS06540 0.84 +0.1
1,333,875 - A4249_RS06540 0.84 -0.6
1,333,982 + A4249_RS06540 0.89 -0.3
1,333,982 + A4249_RS06540 0.89 -1.1
1,333,982 + A4249_RS06540 0.89 -0.1
1,333,982 + A4249_RS06540 0.89 -0.8
1,333,983 - A4249_RS06540 0.89 -0.1
1,333,983 - A4249_RS06540 0.89 +0.5
1,333,983 - A4249_RS06540 0.89 -0.2
1,333,983 - A4249_RS06540 0.89 -0.6
1,335,320 + A4249_RS06550 0.40 -0.5
1,335,320 + A4249_RS06550 0.40 +0.2
1,335,320 + A4249_RS06550 0.40 -0.7
1,335,320 + A4249_RS06550 0.40 -0.4
1,335,320 + A4249_RS06550 0.40 +0.5
1,335,321 - A4249_RS06550 0.40 +0.9
1,335,321 - A4249_RS06550 0.40 -0.9
1,335,321 - A4249_RS06550 0.40 +0.2
1,335,321 - A4249_RS06550 0.40 -0.7
1,335,321 - A4249_RS06550 0.40 -1.1
1,335,321 - A4249_RS06550 0.40 -0.7
1,335,500 + -0.9
1,335,501 - -0.9
1,335,501 - -0.9
1,335,537 + -0.7
1,335,537 + -0.3
1,335,537 + +0.5
1,335,538 - +0.3
1,335,538 - +0.5
1,335,538 - +0.2
1,335,573 + A4249_RS06555 0.10 -0.2
1,335,721 + A4249_RS06555 0.52 -0.3
1,335,721 + A4249_RS06555 0.52 +0.7
1,335,722 - A4249_RS06555 0.53 -1.0
1,335,722 - A4249_RS06555 0.53 +0.3
1,335,722 - A4249_RS06555 0.53 -1.3
1,335,722 - A4249_RS06555 0.53 -1.6
1,335,722 - A4249_RS06555 0.53 +0.0
1,335,722 - A4249_RS06555 0.53 +0.7
1,335,722 - A4249_RS06555 0.53 +0.0
1,335,947 + -0.7
1,335,947 + -0.9
1,335,947 + +1.0
1,335,947 + +0.1
1,335,947 + +0.1
1,335,948 - +0.8
1,335,948 - +1.0
1,335,948 - +0.8
1,335,948 - -0.5
1,335,948 - +0.9
1,335,948 - +0.2
1,335,948 - +0.3
1,335,948 - +0.5

Or see this region's nucleotide sequence