Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS06405

Experiment: Adenine 0.74 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS06390 and A4249_RS06395 are separated by 5 nucleotidesA4249_RS06395 and A4249_RS06400 overlap by 1 nucleotidesA4249_RS06400 and A4249_RS06405 overlap by 4 nucleotidesA4249_RS06405 and A4249_RS06410 are separated by 86 nucleotidesA4249_RS06410 and A4249_RS06415 are separated by 56 nucleotides A4249_RS06390: A4249_RS06390 - NADH-quinone oxidoreductase subunit NuoF, at 1,302,650 to 1,303,963 _RS06390 A4249_RS06395: A4249_RS06395 - hypothetical protein, at 1,303,969 to 1,304,232 _RS06395 A4249_RS06400: A4249_RS06400 - NADH-quinone oxidoreductase subunit NuoE, at 1,304,232 to 1,304,909 _RS06400 A4249_RS06405: A4249_RS06405 - NADH-quinone oxidoreductase subunit D, at 1,304,906 to 1,306,084 _RS06405 A4249_RS06410: A4249_RS06410 - NADH-quinone oxidoreductase subunit C, at 1,306,171 to 1,306,740 _RS06410 A4249_RS06415: A4249_RS06415 - NADH-quinone oxidoreductase subunit B, at 1,306,797 to 1,307,426 _RS06415 Position (kb) 1304 1305 1306 1307Strain fitness (log2 ratio) -1 0 1at 1304.056 kb on - strand, within A4249_RS06395at 1304.056 kb on - strand, within A4249_RS06395at 1304.056 kb on - strand, within A4249_RS06395at 1304.056 kb on - strand, within A4249_RS06395at 1304.056 kb on - strand, within A4249_RS06395at 1304.060 kb on + strand, within A4249_RS06395at 1304.061 kb on - strand, within A4249_RS06395at 1304.061 kb on - strand, within A4249_RS06395at 1304.061 kb on - strand, within A4249_RS06395at 1304.061 kb on - strand, within A4249_RS06395at 1304.061 kb on - strand, within A4249_RS06395at 1304.061 kb on - strand, within A4249_RS06395at 1304.061 kb on - strand, within A4249_RS06395at 1304.137 kb on - strand, within A4249_RS06395at 1304.137 kb on - strand, within A4249_RS06395at 1304.190 kb on - strand, within A4249_RS06395

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine 0.74 mM (C)
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1,304,056 - A4249_RS06395 0.33 -0.4
1,304,056 - A4249_RS06395 0.33 -0.0
1,304,056 - A4249_RS06395 0.33 -0.1
1,304,056 - A4249_RS06395 0.33 +0.5
1,304,056 - A4249_RS06395 0.33 -0.8
1,304,060 + A4249_RS06395 0.34 +1.1
1,304,061 - A4249_RS06395 0.35 -0.5
1,304,061 - A4249_RS06395 0.35 +0.6
1,304,061 - A4249_RS06395 0.35 -0.1
1,304,061 - A4249_RS06395 0.35 -0.3
1,304,061 - A4249_RS06395 0.35 -1.4
1,304,061 - A4249_RS06395 0.35 +0.5
1,304,061 - A4249_RS06395 0.35 -0.3
1,304,137 - A4249_RS06395 0.64 +0.1
1,304,137 - A4249_RS06395 0.64 -0.4
1,304,190 - A4249_RS06395 0.84 +0.1

Or see this region's nucleotide sequence