Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS06275

Experiment: Adenine 0.74 mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntA4249_RS06270 and A4249_RS06275 are separated by 111 nucleotidesA4249_RS06275 and A4249_RS06280 are separated by 226 nucleotidesA4249_RS06280 and A4249_RS06285 are separated by 87 nucleotides A4249_RS06270: A4249_RS06270 - translation elongation factor Ts, at 1,276,931 to 1,277,872 _RS06270 A4249_RS06275: A4249_RS06275 - 30S ribosomal protein S2, at 1,277,984 to 1,278,847 _RS06275 A4249_RS06280: A4249_RS06280 - DUF4142 domain-containing protein, at 1,279,074 to 1,279,670 _RS06280 A4249_RS06285: A4249_RS06285 - DNA polymerase III subunit alpha, at 1,279,758 to 1,283,222 _RS06285 Position (kb) 1277 1278 1279Strain fitness (log2 ratio) -1 0 1 2at 1277.897 kb on - strandat 1277.897 kb on - strandat 1277.897 kb on - strandat 1277.921 kb on - strandat 1279.075 kb on + strandat 1279.075 kb on + strandat 1279.076 kb on - strandat 1279.076 kb on - strandat 1279.076 kb on - strandat 1279.237 kb on + strand, within A4249_RS06280at 1279.237 kb on + strand, within A4249_RS06280at 1279.238 kb on - strand, within A4249_RS06280at 1279.238 kb on - strand, within A4249_RS06280at 1279.238 kb on - strand, within A4249_RS06280at 1279.462 kb on + strand, within A4249_RS06280at 1279.462 kb on + strand, within A4249_RS06280at 1279.462 kb on + strand, within A4249_RS06280at 1279.462 kb on + strand, within A4249_RS06280at 1279.462 kb on + strand, within A4249_RS06280at 1279.462 kb on + strand, within A4249_RS06280at 1279.462 kb on + strand, within A4249_RS06280at 1279.462 kb on + strand, within A4249_RS06280at 1279.462 kb on + strand, within A4249_RS06280at 1279.462 kb on + strand, within A4249_RS06280at 1279.462 kb on + strand, within A4249_RS06280at 1279.462 kb on + strand, within A4249_RS06280at 1279.462 kb on + strand, within A4249_RS06280at 1279.462 kb on + strand, within A4249_RS06280at 1279.462 kb on + strand, within A4249_RS06280at 1279.462 kb on + strand, within A4249_RS06280at 1279.462 kb on + strand, within A4249_RS06280at 1279.462 kb on + strand, within A4249_RS06280at 1279.462 kb on + strand, within A4249_RS06280at 1279.462 kb on + strand, within A4249_RS06280at 1279.462 kb on + strand, within A4249_RS06280at 1279.462 kb on + strand, within A4249_RS06280at 1279.463 kb on - strand, within A4249_RS06280at 1279.463 kb on - strand, within A4249_RS06280at 1279.463 kb on - strand, within A4249_RS06280at 1279.463 kb on - strand, within A4249_RS06280at 1279.463 kb on - strand, within A4249_RS06280at 1279.463 kb on - strand, within A4249_RS06280at 1279.463 kb on - strand, within A4249_RS06280at 1279.463 kb on - strand, within A4249_RS06280at 1279.463 kb on - strand, within A4249_RS06280at 1279.663 kb on + strandat 1279.663 kb on + strandat 1279.663 kb on + strandat 1279.664 kb on - strandat 1279.664 kb on - strandat 1279.664 kb on - strandat 1279.664 kb on - strandat 1279.686 kb on - strandat 1279.759 kb on + strandat 1279.760 kb on - strandat 1279.760 kb on - strandat 1279.760 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Adenine 0.74 mM (C)
remove
1,277,897 - -0.4
1,277,897 - -0.2
1,277,897 - -0.5
1,277,921 - -0.4
1,279,075 + -0.4
1,279,075 + -0.8
1,279,076 - -0.1
1,279,076 - -0.0
1,279,076 - +0.5
1,279,237 + A4249_RS06280 0.27 +0.0
1,279,237 + A4249_RS06280 0.27 +0.7
1,279,238 - A4249_RS06280 0.27 +0.1
1,279,238 - A4249_RS06280 0.27 -0.7
1,279,238 - A4249_RS06280 0.27 +1.2
1,279,462 + A4249_RS06280 0.65 -0.4
1,279,462 + A4249_RS06280 0.65 +0.1
1,279,462 + A4249_RS06280 0.65 -0.3
1,279,462 + A4249_RS06280 0.65 -0.6
1,279,462 + A4249_RS06280 0.65 +1.1
1,279,462 + A4249_RS06280 0.65 -0.2
1,279,462 + A4249_RS06280 0.65 -0.7
1,279,462 + A4249_RS06280 0.65 +0.8
1,279,462 + A4249_RS06280 0.65 +0.1
1,279,462 + A4249_RS06280 0.65 -0.8
1,279,462 + A4249_RS06280 0.65 -0.1
1,279,462 + A4249_RS06280 0.65 +0.2
1,279,462 + A4249_RS06280 0.65 -1.0
1,279,462 + A4249_RS06280 0.65 -1.6
1,279,462 + A4249_RS06280 0.65 +0.8
1,279,462 + A4249_RS06280 0.65 +0.7
1,279,462 + A4249_RS06280 0.65 +0.6
1,279,462 + A4249_RS06280 0.65 -1.1
1,279,462 + A4249_RS06280 0.65 -0.3
1,279,462 + A4249_RS06280 0.65 -0.2
1,279,462 + A4249_RS06280 0.65 -0.4
1,279,462 + A4249_RS06280 0.65 -0.3
1,279,463 - A4249_RS06280 0.65 +0.6
1,279,463 - A4249_RS06280 0.65 -0.2
1,279,463 - A4249_RS06280 0.65 +0.2
1,279,463 - A4249_RS06280 0.65 +0.2
1,279,463 - A4249_RS06280 0.65 +0.1
1,279,463 - A4249_RS06280 0.65 -0.5
1,279,463 - A4249_RS06280 0.65 +0.4
1,279,463 - A4249_RS06280 0.65 -0.1
1,279,463 - A4249_RS06280 0.65 +0.2
1,279,663 + -0.3
1,279,663 + +0.4
1,279,663 + +0.0
1,279,664 - -0.2
1,279,664 - +2.4
1,279,664 - -0.7
1,279,664 - -0.4
1,279,686 - +0.1
1,279,759 + -0.1
1,279,760 - -0.5
1,279,760 - +0.0
1,279,760 - +0.5

Or see this region's nucleotide sequence