Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS05900

Experiment: Adenine 0.74 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS05895 and A4249_RS05900 are separated by 39 nucleotidesA4249_RS05900 and A4249_RS05905 are separated by 106 nucleotides A4249_RS05895: A4249_RS05895 - single-stranded-DNA-specific exonuclease RecJ, at 1,205,609 to 1,207,420 _RS05895 A4249_RS05900: A4249_RS05900 - hypothetical protein, at 1,207,460 to 1,207,885 _RS05900 A4249_RS05905: A4249_RS05905 - class I poly(R)-hydroxyalkanoic acid synthase, at 1,207,992 to 1,209,932 _RS05905 Position (kb) 1207 1208Strain fitness (log2 ratio) -2 -1 0 1 2at 1207.429 kb on + strandat 1207.430 kb on - strandat 1207.775 kb on + strand, within A4249_RS05900at 1207.775 kb on + strand, within A4249_RS05900at 1207.775 kb on + strand, within A4249_RS05900at 1207.775 kb on + strand, within A4249_RS05900at 1207.776 kb on - strand, within A4249_RS05900at 1207.776 kb on - strand, within A4249_RS05900at 1207.786 kb on + strand, within A4249_RS05900at 1207.787 kb on - strand, within A4249_RS05900at 1207.924 kb on + strandat 1207.924 kb on + strandat 1207.924 kb on + strandat 1207.924 kb on + strandat 1207.924 kb on + strandat 1207.924 kb on + strandat 1207.924 kb on + strandat 1207.924 kb on + strandat 1207.924 kb on + strandat 1207.924 kb on + strandat 1207.925 kb on - strandat 1207.925 kb on - strandat 1207.925 kb on - strandat 1207.925 kb on - strandat 1207.925 kb on - strandat 1207.925 kb on - strandat 1207.925 kb on - strandat 1208.391 kb on + strand, within A4249_RS05905at 1208.391 kb on + strand, within A4249_RS05905at 1208.391 kb on + strand, within A4249_RS05905at 1208.391 kb on + strand, within A4249_RS05905at 1208.391 kb on + strand, within A4249_RS05905at 1208.391 kb on + strand, within A4249_RS05905at 1208.391 kb on + strand, within A4249_RS05905at 1208.392 kb on - strand, within A4249_RS05905at 1208.392 kb on - strand, within A4249_RS05905at 1208.392 kb on - strand, within A4249_RS05905at 1208.393 kb on + strand, within A4249_RS05905at 1208.393 kb on + strand, within A4249_RS05905at 1208.393 kb on + strand, within A4249_RS05905at 1208.393 kb on + strand, within A4249_RS05905at 1208.393 kb on + strand, within A4249_RS05905at 1208.393 kb on + strand, within A4249_RS05905at 1208.393 kb on + strand, within A4249_RS05905at 1208.393 kb on + strand, within A4249_RS05905at 1208.393 kb on + strand, within A4249_RS05905at 1208.393 kb on + strand, within A4249_RS05905at 1208.393 kb on + strand, within A4249_RS05905at 1208.393 kb on + strand, within A4249_RS05905at 1208.394 kb on - strand, within A4249_RS05905at 1208.394 kb on - strand, within A4249_RS05905at 1208.394 kb on - strand, within A4249_RS05905at 1208.394 kb on - strand, within A4249_RS05905at 1208.394 kb on - strand, within A4249_RS05905at 1208.394 kb on - strand, within A4249_RS05905at 1208.394 kb on - strand, within A4249_RS05905at 1208.394 kb on - strand, within A4249_RS05905at 1208.520 kb on + strand, within A4249_RS05905at 1208.520 kb on + strand, within A4249_RS05905at 1208.520 kb on + strand, within A4249_RS05905at 1208.520 kb on + strand, within A4249_RS05905at 1208.520 kb on + strand, within A4249_RS05905at 1208.520 kb on + strand, within A4249_RS05905at 1208.520 kb on + strand, within A4249_RS05905at 1208.521 kb on - strand, within A4249_RS05905at 1208.521 kb on - strand, within A4249_RS05905at 1208.775 kb on + strand, within A4249_RS05905at 1208.775 kb on + strand, within A4249_RS05905at 1208.776 kb on - strand, within A4249_RS05905at 1208.859 kb on + strand, within A4249_RS05905at 1208.859 kb on + strand, within A4249_RS05905at 1208.859 kb on + strand, within A4249_RS05905at 1208.859 kb on + strand, within A4249_RS05905at 1208.860 kb on - strand, within A4249_RS05905at 1208.860 kb on - strand, within A4249_RS05905

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine 0.74 mM (C)
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1,207,429 + +0.2
1,207,430 - -0.1
1,207,775 + A4249_RS05900 0.74 +1.6
1,207,775 + A4249_RS05900 0.74 -1.2
1,207,775 + A4249_RS05900 0.74 -1.7
1,207,775 + A4249_RS05900 0.74 +0.3
1,207,776 - A4249_RS05900 0.74 +0.1
1,207,776 - A4249_RS05900 0.74 +0.2
1,207,786 + A4249_RS05900 0.77 +1.1
1,207,787 - A4249_RS05900 0.77 -0.9
1,207,924 + +0.9
1,207,924 + -0.2
1,207,924 + -0.4
1,207,924 + +0.1
1,207,924 + -0.2
1,207,924 + -0.5
1,207,924 + -0.2
1,207,924 + -0.2
1,207,924 + +0.5
1,207,924 + +0.2
1,207,925 - +0.9
1,207,925 - -0.3
1,207,925 - +0.9
1,207,925 - +1.6
1,207,925 - -0.2
1,207,925 - -0.6
1,207,925 - +0.3
1,208,391 + A4249_RS05905 0.21 +0.0
1,208,391 + A4249_RS05905 0.21 -0.2
1,208,391 + A4249_RS05905 0.21 +0.2
1,208,391 + A4249_RS05905 0.21 -0.3
1,208,391 + A4249_RS05905 0.21 +0.4
1,208,391 + A4249_RS05905 0.21 -1.2
1,208,391 + A4249_RS05905 0.21 +0.0
1,208,392 - A4249_RS05905 0.21 -0.0
1,208,392 - A4249_RS05905 0.21 +0.5
1,208,392 - A4249_RS05905 0.21 +0.7
1,208,393 + A4249_RS05905 0.21 -0.3
1,208,393 + A4249_RS05905 0.21 +0.3
1,208,393 + A4249_RS05905 0.21 +0.9
1,208,393 + A4249_RS05905 0.21 +0.1
1,208,393 + A4249_RS05905 0.21 -0.5
1,208,393 + A4249_RS05905 0.21 +0.2
1,208,393 + A4249_RS05905 0.21 +0.4
1,208,393 + A4249_RS05905 0.21 -0.3
1,208,393 + A4249_RS05905 0.21 +0.5
1,208,393 + A4249_RS05905 0.21 -1.4
1,208,393 + A4249_RS05905 0.21 -2.2
1,208,393 + A4249_RS05905 0.21 -0.3
1,208,394 - A4249_RS05905 0.21 +0.7
1,208,394 - A4249_RS05905 0.21 -0.1
1,208,394 - A4249_RS05905 0.21 -0.2
1,208,394 - A4249_RS05905 0.21 -0.1
1,208,394 - A4249_RS05905 0.21 +0.2
1,208,394 - A4249_RS05905 0.21 +1.4
1,208,394 - A4249_RS05905 0.21 -1.2
1,208,394 - A4249_RS05905 0.21 +0.1
1,208,520 + A4249_RS05905 0.27 -0.8
1,208,520 + A4249_RS05905 0.27 -1.6
1,208,520 + A4249_RS05905 0.27 +0.4
1,208,520 + A4249_RS05905 0.27 +1.8
1,208,520 + A4249_RS05905 0.27 +0.3
1,208,520 + A4249_RS05905 0.27 -0.6
1,208,520 + A4249_RS05905 0.27 +1.0
1,208,521 - A4249_RS05905 0.27 -1.0
1,208,521 - A4249_RS05905 0.27 +0.5
1,208,775 + A4249_RS05905 0.40 +0.6
1,208,775 + A4249_RS05905 0.40 +0.4
1,208,776 - A4249_RS05905 0.40 +1.3
1,208,859 + A4249_RS05905 0.45 -0.3
1,208,859 + A4249_RS05905 0.45 -1.9
1,208,859 + A4249_RS05905 0.45 -0.8
1,208,859 + A4249_RS05905 0.45 +0.2
1,208,860 - A4249_RS05905 0.45 +0.8
1,208,860 - A4249_RS05905 0.45 -0.8

Or see this region's nucleotide sequence