Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS05490

Experiment: Adenine 0.74 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS05480 and A4249_RS05485 are separated by 3 nucleotidesA4249_RS05485 and A4249_RS05490 overlap by 4 nucleotidesA4249_RS05490 and A4249_RS05495 overlap by 2 nucleotidesA4249_RS05495 and A4249_RS05500 are separated by 84 nucleotides A4249_RS05480: A4249_RS05480 - SsrA-binding protein SmpB, at 1,121,020 to 1,121,493 _RS05480 A4249_RS05485: A4249_RS05485 - uracil-DNA glycosylase, at 1,121,497 to 1,122,135 _RS05485 A4249_RS05490: A4249_RS05490 - NYN domain-containing protein, at 1,122,132 to 1,122,668 _RS05490 A4249_RS05495: A4249_RS05495 - 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase, at 1,122,667 to 1,123,230 _RS05495 A4249_RS05500: A4249_RS05500 - DNA-directed RNA polymerase subunit omega, at 1,123,315 to 1,123,674 _RS05500 Position (kb) 1122 1123Strain fitness (log2 ratio) -2 -1 0 1 2at 1121.591 kb on + strand, within A4249_RS05485at 1121.592 kb on - strand, within A4249_RS05485at 1121.592 kb on - strand, within A4249_RS05485at 1121.609 kb on + strand, within A4249_RS05485at 1121.873 kb on + strand, within A4249_RS05485at 1121.907 kb on + strand, within A4249_RS05485at 1121.913 kb on - strand, within A4249_RS05485at 1121.913 kb on - strand, within A4249_RS05485at 1121.913 kb on - strand, within A4249_RS05485at 1122.077 kb on + strandat 1122.221 kb on + strand, within A4249_RS05490at 1122.410 kb on + strand, within A4249_RS05490at 1122.411 kb on - strand, within A4249_RS05490at 1122.460 kb on + strand, within A4249_RS05490at 1122.461 kb on - strand, within A4249_RS05490at 1122.461 kb on - strand, within A4249_RS05490at 1122.521 kb on + strand, within A4249_RS05490at 1122.521 kb on + strand, within A4249_RS05490at 1122.521 kb on + strand, within A4249_RS05490at 1122.521 kb on + strand, within A4249_RS05490at 1122.521 kb on + strand, within A4249_RS05490at 1122.522 kb on - strand, within A4249_RS05490at 1122.522 kb on - strand, within A4249_RS05490at 1122.522 kb on - strand, within A4249_RS05490at 1122.522 kb on - strand, within A4249_RS05490at 1122.522 kb on - strand, within A4249_RS05490at 1122.522 kb on - strand, within A4249_RS05490at 1122.523 kb on + strand, within A4249_RS05490at 1122.523 kb on + strand, within A4249_RS05490at 1122.523 kb on + strand, within A4249_RS05490at 1122.523 kb on + strand, within A4249_RS05490at 1122.523 kb on + strand, within A4249_RS05490at 1122.523 kb on + strand, within A4249_RS05490at 1122.523 kb on + strand, within A4249_RS05490at 1122.523 kb on + strand, within A4249_RS05490at 1122.523 kb on + strand, within A4249_RS05490at 1122.523 kb on + strand, within A4249_RS05490at 1122.523 kb on + strand, within A4249_RS05490at 1122.523 kb on + strand, within A4249_RS05490at 1122.524 kb on - strand, within A4249_RS05490at 1122.524 kb on - strand, within A4249_RS05490at 1122.524 kb on - strand, within A4249_RS05490at 1122.524 kb on - strand, within A4249_RS05490at 1122.524 kb on - strand, within A4249_RS05490at 1122.524 kb on - strand, within A4249_RS05490at 1122.526 kb on + strand, within A4249_RS05490at 1122.526 kb on + strand, within A4249_RS05490at 1122.526 kb on + strand, within A4249_RS05490at 1122.526 kb on + strand, within A4249_RS05490at 1122.526 kb on + strand, within A4249_RS05490at 1122.526 kb on + strand, within A4249_RS05490at 1122.526 kb on + strand, within A4249_RS05490at 1122.526 kb on + strand, within A4249_RS05490at 1122.527 kb on - strand, within A4249_RS05490at 1122.527 kb on - strand, within A4249_RS05490at 1122.527 kb on - strand, within A4249_RS05490at 1122.527 kb on - strand, within A4249_RS05490at 1122.529 kb on + strand, within A4249_RS05490at 1122.529 kb on + strand, within A4249_RS05490at 1122.529 kb on + strand, within A4249_RS05490at 1122.529 kb on + strand, within A4249_RS05490at 1122.529 kb on + strand, within A4249_RS05490at 1122.529 kb on + strand, within A4249_RS05490at 1122.529 kb on + strand, within A4249_RS05490at 1122.529 kb on + strand, within A4249_RS05490at 1122.529 kb on + strand, within A4249_RS05490at 1122.530 kb on - strand, within A4249_RS05490at 1122.530 kb on - strand, within A4249_RS05490at 1122.530 kb on - strand, within A4249_RS05490at 1122.530 kb on - strand, within A4249_RS05490at 1122.617 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine 0.74 mM (C)
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1,121,591 + A4249_RS05485 0.15 +0.9
1,121,592 - A4249_RS05485 0.15 -0.5
1,121,592 - A4249_RS05485 0.15 -0.2
1,121,609 + A4249_RS05485 0.18 +1.1
1,121,873 + A4249_RS05485 0.59 +0.8
1,121,907 + A4249_RS05485 0.64 -0.7
1,121,913 - A4249_RS05485 0.65 -0.1
1,121,913 - A4249_RS05485 0.65 +1.0
1,121,913 - A4249_RS05485 0.65 +1.9
1,122,077 + -0.9
1,122,221 + A4249_RS05490 0.17 +0.0
1,122,410 + A4249_RS05490 0.52 +0.3
1,122,411 - A4249_RS05490 0.52 -0.4
1,122,460 + A4249_RS05490 0.61 -0.2
1,122,461 - A4249_RS05490 0.61 +1.3
1,122,461 - A4249_RS05490 0.61 -0.0
1,122,521 + A4249_RS05490 0.72 -0.4
1,122,521 + A4249_RS05490 0.72 +0.2
1,122,521 + A4249_RS05490 0.72 -0.0
1,122,521 + A4249_RS05490 0.72 +0.2
1,122,521 + A4249_RS05490 0.72 +1.7
1,122,522 - A4249_RS05490 0.73 -0.0
1,122,522 - A4249_RS05490 0.73 -0.4
1,122,522 - A4249_RS05490 0.73 +0.1
1,122,522 - A4249_RS05490 0.73 +0.4
1,122,522 - A4249_RS05490 0.73 -0.0
1,122,522 - A4249_RS05490 0.73 -0.1
1,122,523 + A4249_RS05490 0.73 +0.7
1,122,523 + A4249_RS05490 0.73 +0.2
1,122,523 + A4249_RS05490 0.73 +0.2
1,122,523 + A4249_RS05490 0.73 -0.0
1,122,523 + A4249_RS05490 0.73 +0.2
1,122,523 + A4249_RS05490 0.73 -0.5
1,122,523 + A4249_RS05490 0.73 +0.1
1,122,523 + A4249_RS05490 0.73 +0.5
1,122,523 + A4249_RS05490 0.73 -1.4
1,122,523 + A4249_RS05490 0.73 -1.4
1,122,523 + A4249_RS05490 0.73 +0.0
1,122,523 + A4249_RS05490 0.73 -1.6
1,122,524 - A4249_RS05490 0.73 -0.6
1,122,524 - A4249_RS05490 0.73 +0.3
1,122,524 - A4249_RS05490 0.73 -1.8
1,122,524 - A4249_RS05490 0.73 -0.8
1,122,524 - A4249_RS05490 0.73 +0.9
1,122,524 - A4249_RS05490 0.73 +0.5
1,122,526 + A4249_RS05490 0.73 -1.7
1,122,526 + A4249_RS05490 0.73 -2.1
1,122,526 + A4249_RS05490 0.73 +1.0
1,122,526 + A4249_RS05490 0.73 +0.6
1,122,526 + A4249_RS05490 0.73 -0.3
1,122,526 + A4249_RS05490 0.73 +0.1
1,122,526 + A4249_RS05490 0.73 +0.4
1,122,526 + A4249_RS05490 0.73 -0.3
1,122,527 - A4249_RS05490 0.74 -0.4
1,122,527 - A4249_RS05490 0.74 -1.4
1,122,527 - A4249_RS05490 0.74 -0.2
1,122,527 - A4249_RS05490 0.74 -1.4
1,122,529 + A4249_RS05490 0.74 +0.3
1,122,529 + A4249_RS05490 0.74 +0.2
1,122,529 + A4249_RS05490 0.74 +0.2
1,122,529 + A4249_RS05490 0.74 -0.6
1,122,529 + A4249_RS05490 0.74 -0.3
1,122,529 + A4249_RS05490 0.74 +0.6
1,122,529 + A4249_RS05490 0.74 -1.0
1,122,529 + A4249_RS05490 0.74 +1.1
1,122,529 + A4249_RS05490 0.74 +0.0
1,122,530 - A4249_RS05490 0.74 +0.2
1,122,530 - A4249_RS05490 0.74 -0.1
1,122,530 - A4249_RS05490 0.74 -0.8
1,122,530 - A4249_RS05490 0.74 -0.1
1,122,617 - -0.4

Or see this region's nucleotide sequence