Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS05300

Experiment: Adenine 0.74 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS05290 and A4249_RS05295 are separated by 58 nucleotidesA4249_RS05295 and A4249_RS05300 are separated by 91 nucleotidesA4249_RS05300 and A4249_RS05305 are separated by 317 nucleotides A4249_RS05290: A4249_RS05290 - Crp/Fnr family transcriptional regulator, at 1,087,269 to 1,088,027 _RS05290 A4249_RS05295: A4249_RS05295 - Crp/Fnr family transcriptional regulator, at 1,088,086 to 1,088,841 _RS05295 A4249_RS05300: A4249_RS05300 - hypothetical protein, at 1,088,933 to 1,089,181 _RS05300 A4249_RS05305: A4249_RS05305 - glycosyltransferase, at 1,089,499 to 1,090,605 _RS05305 Position (kb) 1088 1089 1090Strain fitness (log2 ratio) -2 -1 0 1at 1087.992 kb on + strandat 1087.992 kb on + strandat 1087.992 kb on + strandat 1087.992 kb on + strandat 1087.992 kb on + strandat 1087.993 kb on - strandat 1087.993 kb on - strandat 1087.993 kb on - strandat 1087.993 kb on - strandat 1087.993 kb on - strandat 1087.993 kb on - strandat 1087.993 kb on - strandat 1087.993 kb on - strandat 1087.993 kb on - strandat 1088.068 kb on - strandat 1088.081 kb on + strandat 1088.087 kb on + strandat 1088.087 kb on + strandat 1088.087 kb on + strandat 1088.088 kb on - strandat 1088.088 kb on - strandat 1088.088 kb on - strandat 1088.088 kb on - strandat 1088.130 kb on + strandat 1088.130 kb on + strandat 1088.130 kb on + strandat 1088.130 kb on + strandat 1088.130 kb on + strandat 1088.130 kb on + strandat 1088.130 kb on + strandat 1088.130 kb on + strandat 1088.131 kb on - strandat 1088.131 kb on - strandat 1088.131 kb on - strandat 1088.150 kb on + strandat 1088.150 kb on + strandat 1088.150 kb on + strandat 1088.150 kb on + strandat 1088.151 kb on - strandat 1088.151 kb on - strandat 1088.151 kb on - strandat 1088.347 kb on + strand, within A4249_RS05295at 1088.366 kb on + strand, within A4249_RS05295at 1088.367 kb on - strand, within A4249_RS05295at 1088.367 kb on - strand, within A4249_RS05295at 1088.367 kb on - strand, within A4249_RS05295at 1088.367 kb on - strand, within A4249_RS05295at 1088.367 kb on - strand, within A4249_RS05295at 1088.452 kb on + strand, within A4249_RS05295at 1088.452 kb on + strand, within A4249_RS05295at 1088.452 kb on + strand, within A4249_RS05295at 1088.453 kb on - strand, within A4249_RS05295at 1088.453 kb on - strand, within A4249_RS05295at 1088.453 kb on - strand, within A4249_RS05295at 1088.453 kb on - strand, within A4249_RS05295at 1088.557 kb on + strand, within A4249_RS05295at 1088.558 kb on - strand, within A4249_RS05295at 1088.622 kb on + strand, within A4249_RS05295at 1088.622 kb on + strand, within A4249_RS05295at 1088.694 kb on + strand, within A4249_RS05295at 1088.694 kb on + strand, within A4249_RS05295at 1088.695 kb on - strand, within A4249_RS05295at 1088.695 kb on - strand, within A4249_RS05295at 1088.761 kb on + strand, within A4249_RS05295at 1088.761 kb on + strand, within A4249_RS05295at 1088.761 kb on + strand, within A4249_RS05295at 1088.761 kb on + strand, within A4249_RS05295at 1088.761 kb on + strand, within A4249_RS05295at 1088.761 kb on + strand, within A4249_RS05295at 1088.761 kb on + strand, within A4249_RS05295at 1088.762 kb on - strand, within A4249_RS05295at 1088.762 kb on - strand, within A4249_RS05295at 1088.762 kb on - strand, within A4249_RS05295at 1088.762 kb on - strand, within A4249_RS05295at 1088.762 kb on - strand, within A4249_RS05295at 1088.762 kb on - strand, within A4249_RS05295at 1088.762 kb on - strand, within A4249_RS05295at 1088.762 kb on - strand, within A4249_RS05295at 1088.762 kb on - strand, within A4249_RS05295at 1088.907 kb on + strandat 1088.907 kb on + strandat 1088.973 kb on - strand, within A4249_RS05300at 1089.196 kb on + strandat 1089.196 kb on + strandat 1089.196 kb on + strandat 1089.196 kb on + strandat 1089.196 kb on + strandat 1089.196 kb on + strandat 1089.196 kb on + strandat 1089.197 kb on - strandat 1089.197 kb on - strandat 1089.197 kb on - strandat 1089.246 kb on + strandat 1089.246 kb on + strandat 1089.246 kb on + strandat 1089.246 kb on + strandat 1089.247 kb on - strandat 1089.247 kb on - strandat 1089.247 kb on - strandat 1089.247 kb on - strandat 1089.247 kb on - strandat 1089.247 kb on - strandat 1089.271 kb on + strandat 1089.272 kb on - strandat 1089.272 kb on - strandat 1089.272 kb on - strandat 1089.276 kb on + strandat 1089.416 kb on + strandat 1089.416 kb on + strandat 1089.417 kb on - strandat 1089.417 kb on - strandat 1089.427 kb on + strandat 1089.427 kb on + strandat 1089.427 kb on + strandat 1089.427 kb on + strandat 1089.427 kb on + strandat 1089.428 kb on - strandat 1089.448 kb on - strandat 1089.448 kb on - strandat 1089.448 kb on - strandat 1089.529 kb on + strandat 1089.529 kb on + strandat 1089.530 kb on - strandat 1089.530 kb on - strandat 1089.570 kb on + strandat 1089.570 kb on + strandat 1089.570 kb on + strandat 1089.570 kb on + strandat 1089.571 kb on - strandat 1089.571 kb on - strandat 1089.742 kb on + strand, within A4249_RS05305at 1089.742 kb on + strand, within A4249_RS05305at 1089.742 kb on + strand, within A4249_RS05305at 1089.742 kb on + strand, within A4249_RS05305at 1089.743 kb on - strand, within A4249_RS05305at 1089.743 kb on - strand, within A4249_RS05305at 1089.788 kb on + strand, within A4249_RS05305at 1089.788 kb on + strand, within A4249_RS05305at 1089.788 kb on + strand, within A4249_RS05305at 1089.788 kb on + strand, within A4249_RS05305at 1089.788 kb on + strand, within A4249_RS05305at 1089.788 kb on + strand, within A4249_RS05305at 1089.789 kb on - strand, within A4249_RS05305at 1089.789 kb on - strand, within A4249_RS05305at 1089.789 kb on - strand, within A4249_RS05305at 1089.789 kb on - strand, within A4249_RS05305at 1089.789 kb on - strand, within A4249_RS05305at 1089.789 kb on - strand, within A4249_RS05305at 1089.789 kb on - strand, within A4249_RS05305at 1089.789 kb on - strand, within A4249_RS05305at 1089.808 kb on + strand, within A4249_RS05305at 1089.808 kb on + strand, within A4249_RS05305at 1089.808 kb on + strand, within A4249_RS05305at 1089.808 kb on + strand, within A4249_RS05305at 1089.808 kb on + strand, within A4249_RS05305at 1089.809 kb on - strand, within A4249_RS05305at 1089.809 kb on - strand, within A4249_RS05305at 1089.809 kb on - strand, within A4249_RS05305at 1089.809 kb on - strand, within A4249_RS05305at 1090.060 kb on + strand, within A4249_RS05305at 1090.146 kb on + strand, within A4249_RS05305at 1090.146 kb on + strand, within A4249_RS05305at 1090.151 kb on + strand, within A4249_RS05305at 1090.162 kb on + strand, within A4249_RS05305at 1090.162 kb on + strand, within A4249_RS05305at 1090.163 kb on - strand, within A4249_RS05305at 1090.163 kb on - strand, within A4249_RS05305at 1090.163 kb on - strand, within A4249_RS05305

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine 0.74 mM (C)
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1,087,992 + -0.1
1,087,992 + +0.9
1,087,992 + +0.2
1,087,992 + +0.6
1,087,992 + -0.7
1,087,993 - -0.5
1,087,993 - -0.1
1,087,993 - -0.1
1,087,993 - +0.8
1,087,993 - -0.3
1,087,993 - +0.7
1,087,993 - -0.2
1,087,993 - -0.5
1,087,993 - +1.1
1,088,068 - -0.8
1,088,081 + -0.9
1,088,087 + -0.5
1,088,087 + +0.7
1,088,087 + +0.2
1,088,088 - +0.8
1,088,088 - -0.3
1,088,088 - -0.3
1,088,088 - +0.6
1,088,130 + -0.1
1,088,130 + -0.2
1,088,130 + -0.8
1,088,130 + -0.0
1,088,130 + +1.0
1,088,130 + -0.3
1,088,130 + -1.3
1,088,130 + +0.7
1,088,131 - -0.1
1,088,131 - -0.5
1,088,131 - -0.4
1,088,150 + -0.4
1,088,150 + -0.9
1,088,150 + -0.2
1,088,150 + -0.2
1,088,151 - +0.3
1,088,151 - -0.2
1,088,151 - +0.6
1,088,347 + A4249_RS05295 0.35 +0.1
1,088,366 + A4249_RS05295 0.37 -1.5
1,088,367 - A4249_RS05295 0.37 +0.5
1,088,367 - A4249_RS05295 0.37 +0.6
1,088,367 - A4249_RS05295 0.37 +0.3
1,088,367 - A4249_RS05295 0.37 +0.5
1,088,367 - A4249_RS05295 0.37 +0.9
1,088,452 + A4249_RS05295 0.48 -1.2
1,088,452 + A4249_RS05295 0.48 +0.2
1,088,452 + A4249_RS05295 0.48 +0.2
1,088,453 - A4249_RS05295 0.49 +0.5
1,088,453 - A4249_RS05295 0.49 -0.5
1,088,453 - A4249_RS05295 0.49 +0.1
1,088,453 - A4249_RS05295 0.49 -0.2
1,088,557 + A4249_RS05295 0.62 +0.4
1,088,558 - A4249_RS05295 0.62 +0.5
1,088,622 + A4249_RS05295 0.71 +0.3
1,088,622 + A4249_RS05295 0.71 -0.2
1,088,694 + A4249_RS05295 0.80 -1.0
1,088,694 + A4249_RS05295 0.80 -1.7
1,088,695 - A4249_RS05295 0.81 +0.9
1,088,695 - A4249_RS05295 0.81 -0.3
1,088,761 + A4249_RS05295 0.89 -0.2
1,088,761 + A4249_RS05295 0.89 +0.8
1,088,761 + A4249_RS05295 0.89 +0.4
1,088,761 + A4249_RS05295 0.89 +0.9
1,088,761 + A4249_RS05295 0.89 +0.0
1,088,761 + A4249_RS05295 0.89 -0.8
1,088,761 + A4249_RS05295 0.89 -1.9
1,088,762 - A4249_RS05295 0.89 +0.2
1,088,762 - A4249_RS05295 0.89 +0.6
1,088,762 - A4249_RS05295 0.89 +0.8
1,088,762 - A4249_RS05295 0.89 +0.6
1,088,762 - A4249_RS05295 0.89 -0.5
1,088,762 - A4249_RS05295 0.89 -1.2
1,088,762 - A4249_RS05295 0.89 +0.4
1,088,762 - A4249_RS05295 0.89 -0.2
1,088,762 - A4249_RS05295 0.89 -0.9
1,088,907 + -0.0
1,088,907 + +0.5
1,088,973 - A4249_RS05300 0.16 -0.4
1,089,196 + -1.2
1,089,196 + +0.1
1,089,196 + +0.2
1,089,196 + +0.5
1,089,196 + -0.2
1,089,196 + -0.3
1,089,196 + +0.9
1,089,197 - +1.1
1,089,197 - +0.0
1,089,197 - +0.2
1,089,246 + -0.7
1,089,246 + +0.5
1,089,246 + -0.1
1,089,246 + +0.1
1,089,247 - -0.2
1,089,247 - -0.1
1,089,247 - +1.3
1,089,247 - +0.1
1,089,247 - +0.1
1,089,247 - +1.7
1,089,271 + -0.9
1,089,272 - -1.5
1,089,272 - -0.3
1,089,272 - -1.3
1,089,276 + +0.7
1,089,416 + +0.4
1,089,416 + -0.6
1,089,417 - -0.6
1,089,417 - +0.3
1,089,427 + +0.5
1,089,427 + +0.2
1,089,427 + -0.1
1,089,427 + +0.4
1,089,427 + -0.8
1,089,428 - -0.3
1,089,448 - +0.6
1,089,448 - -0.4
1,089,448 - +1.0
1,089,529 + +0.3
1,089,529 + -0.2
1,089,530 - +0.8
1,089,530 - +0.0
1,089,570 + -2.3
1,089,570 + -0.9
1,089,570 + +0.4
1,089,570 + +0.5
1,089,571 - -0.7
1,089,571 - +0.8
1,089,742 + A4249_RS05305 0.22 +1.1
1,089,742 + A4249_RS05305 0.22 -0.6
1,089,742 + A4249_RS05305 0.22 -0.8
1,089,742 + A4249_RS05305 0.22 -0.5
1,089,743 - A4249_RS05305 0.22 +0.4
1,089,743 - A4249_RS05305 0.22 +0.5
1,089,788 + A4249_RS05305 0.26 +0.0
1,089,788 + A4249_RS05305 0.26 -0.2
1,089,788 + A4249_RS05305 0.26 +0.2
1,089,788 + A4249_RS05305 0.26 -1.6
1,089,788 + A4249_RS05305 0.26 +0.2
1,089,788 + A4249_RS05305 0.26 -0.4
1,089,789 - A4249_RS05305 0.26 +1.1
1,089,789 - A4249_RS05305 0.26 -0.8
1,089,789 - A4249_RS05305 0.26 +0.3
1,089,789 - A4249_RS05305 0.26 +0.2
1,089,789 - A4249_RS05305 0.26 -0.6
1,089,789 - A4249_RS05305 0.26 -0.6
1,089,789 - A4249_RS05305 0.26 -2.1
1,089,789 - A4249_RS05305 0.26 +0.1
1,089,808 + A4249_RS05305 0.28 -0.6
1,089,808 + A4249_RS05305 0.28 -0.0
1,089,808 + A4249_RS05305 0.28 -0.4
1,089,808 + A4249_RS05305 0.28 -0.4
1,089,808 + A4249_RS05305 0.28 +0.4
1,089,809 - A4249_RS05305 0.28 +1.2
1,089,809 - A4249_RS05305 0.28 -1.9
1,089,809 - A4249_RS05305 0.28 +0.2
1,089,809 - A4249_RS05305 0.28 +0.4
1,090,060 + A4249_RS05305 0.51 -0.3
1,090,146 + A4249_RS05305 0.58 +0.3
1,090,146 + A4249_RS05305 0.58 +0.4
1,090,151 + A4249_RS05305 0.59 +0.3
1,090,162 + A4249_RS05305 0.60 +0.5
1,090,162 + A4249_RS05305 0.60 +0.3
1,090,163 - A4249_RS05305 0.60 +0.1
1,090,163 - A4249_RS05305 0.60 -0.8
1,090,163 - A4249_RS05305 0.60 +0.2

Or see this region's nucleotide sequence