Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS05250

Experiment: Adenine 0.74 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS05240 and A4249_RS05245 are separated by 4 nucleotidesA4249_RS05245 and A4249_RS05250 are separated by 225 nucleotidesA4249_RS05250 and A4249_RS05255 are separated by 17 nucleotidesA4249_RS05255 and A4249_RS05260 are separated by 42 nucleotides A4249_RS05240: A4249_RS05240 - exodeoxyribonuclease III, at 1,080,275 to 1,081,051 _RS05240 A4249_RS05245: A4249_RS05245 - arylesterase, at 1,081,056 to 1,081,625 _RS05245 A4249_RS05250: A4249_RS05250 - glutathione-dependent formaldehyde dehydrogenase, at 1,081,851 to 1,083,029 _RS05250 A4249_RS05255: A4249_RS05255 - SRPBCC family protein, at 1,083,047 to 1,083,613 _RS05255 A4249_RS05260: A4249_RS05260 - hemerythrin domain-containing protein, at 1,083,656 to 1,084,192 _RS05260 Position (kb) 1081 1082 1083 1084Strain fitness (log2 ratio) -2 -1 0 1 2at 1080.895 kb on + strand, within A4249_RS05240at 1080.895 kb on + strand, within A4249_RS05240at 1080.895 kb on + strand, within A4249_RS05240at 1080.896 kb on - strand, within A4249_RS05240at 1080.898 kb on - strand, within A4249_RS05240at 1081.122 kb on + strand, within A4249_RS05245at 1081.123 kb on - strand, within A4249_RS05245at 1081.162 kb on + strand, within A4249_RS05245at 1081.162 kb on + strand, within A4249_RS05245at 1081.162 kb on + strand, within A4249_RS05245at 1081.162 kb on + strand, within A4249_RS05245at 1081.162 kb on + strand, within A4249_RS05245at 1081.162 kb on + strand, within A4249_RS05245at 1081.162 kb on + strand, within A4249_RS05245at 1081.162 kb on + strand, within A4249_RS05245at 1081.163 kb on - strand, within A4249_RS05245at 1081.163 kb on - strand, within A4249_RS05245at 1081.163 kb on - strand, within A4249_RS05245at 1081.163 kb on - strand, within A4249_RS05245at 1081.163 kb on - strand, within A4249_RS05245at 1081.163 kb on - strand, within A4249_RS05245at 1081.163 kb on - strand, within A4249_RS05245at 1081.163 kb on - strand, within A4249_RS05245at 1081.163 kb on - strand, within A4249_RS05245at 1081.163 kb on - strand, within A4249_RS05245at 1081.163 kb on - strand, within A4249_RS05245at 1081.163 kb on - strand, within A4249_RS05245at 1081.163 kb on - strand, within A4249_RS05245at 1081.163 kb on - strand, within A4249_RS05245at 1081.163 kb on - strand, within A4249_RS05245at 1081.237 kb on + strand, within A4249_RS05245at 1081.261 kb on + strand, within A4249_RS05245at 1081.350 kb on - strand, within A4249_RS05245at 1081.350 kb on - strand, within A4249_RS05245at 1081.602 kb on + strandat 1081.617 kb on - strandat 1081.617 kb on - strandat 1081.617 kb on - strandat 1081.617 kb on - strandat 1081.653 kb on + strandat 1081.654 kb on - strandat 1081.912 kb on + strandat 1081.912 kb on + strandat 1081.912 kb on + strandat 1081.912 kb on + strandat 1081.912 kb on + strandat 1081.912 kb on + strandat 1081.912 kb on + strandat 1081.912 kb on + strandat 1081.912 kb on + strandat 1081.912 kb on + strandat 1081.912 kb on + strandat 1081.912 kb on + strandat 1081.913 kb on - strandat 1081.913 kb on - strandat 1081.913 kb on - strandat 1081.913 kb on - strandat 1081.913 kb on - strandat 1082.008 kb on + strand, within A4249_RS05250at 1082.008 kb on + strand, within A4249_RS05250at 1082.008 kb on + strand, within A4249_RS05250at 1082.009 kb on - strand, within A4249_RS05250at 1082.009 kb on - strand, within A4249_RS05250at 1082.009 kb on - strand, within A4249_RS05250at 1082.009 kb on - strand, within A4249_RS05250at 1082.095 kb on + strand, within A4249_RS05250at 1082.095 kb on + strand, within A4249_RS05250at 1082.095 kb on + strand, within A4249_RS05250at 1082.096 kb on - strand, within A4249_RS05250at 1082.096 kb on - strand, within A4249_RS05250at 1082.317 kb on + strand, within A4249_RS05250at 1082.317 kb on + strand, within A4249_RS05250at 1082.317 kb on + strand, within A4249_RS05250at 1082.317 kb on + strand, within A4249_RS05250at 1082.317 kb on + strand, within A4249_RS05250at 1082.317 kb on + strand, within A4249_RS05250at 1082.317 kb on + strand, within A4249_RS05250at 1082.317 kb on + strand, within A4249_RS05250at 1082.317 kb on + strand, within A4249_RS05250at 1082.317 kb on + strand, within A4249_RS05250at 1082.317 kb on + strand, within A4249_RS05250at 1082.317 kb on + strand, within A4249_RS05250at 1082.317 kb on + strand, within A4249_RS05250at 1082.317 kb on + strand, within A4249_RS05250at 1082.317 kb on + strand, within A4249_RS05250at 1082.318 kb on - strand, within A4249_RS05250at 1082.318 kb on - strand, within A4249_RS05250at 1082.318 kb on - strand, within A4249_RS05250at 1082.406 kb on + strand, within A4249_RS05250at 1082.406 kb on + strand, within A4249_RS05250at 1082.407 kb on - strand, within A4249_RS05250at 1082.585 kb on - strand, within A4249_RS05250at 1082.599 kb on + strand, within A4249_RS05250at 1082.599 kb on + strand, within A4249_RS05250at 1082.599 kb on + strand, within A4249_RS05250at 1082.599 kb on + strand, within A4249_RS05250at 1082.599 kb on + strand, within A4249_RS05250at 1082.599 kb on + strand, within A4249_RS05250at 1082.599 kb on + strand, within A4249_RS05250at 1082.600 kb on - strand, within A4249_RS05250at 1082.600 kb on - strand, within A4249_RS05250at 1082.600 kb on - strand, within A4249_RS05250at 1082.600 kb on - strand, within A4249_RS05250at 1082.600 kb on - strand, within A4249_RS05250at 1082.600 kb on - strand, within A4249_RS05250at 1082.600 kb on - strand, within A4249_RS05250at 1082.671 kb on + strand, within A4249_RS05250at 1082.671 kb on + strand, within A4249_RS05250at 1082.672 kb on - strand, within A4249_RS05250at 1082.672 kb on - strand, within A4249_RS05250at 1082.892 kb on - strand, within A4249_RS05250at 1082.896 kb on + strand, within A4249_RS05250at 1082.896 kb on + strand, within A4249_RS05250at 1082.896 kb on + strand, within A4249_RS05250at 1082.897 kb on - strand, within A4249_RS05250at 1082.897 kb on - strand, within A4249_RS05250at 1082.933 kb on + strandat 1083.216 kb on + strand, within A4249_RS05255at 1083.216 kb on + strand, within A4249_RS05255at 1083.217 kb on - strand, within A4249_RS05255at 1083.217 kb on - strand, within A4249_RS05255at 1083.217 kb on - strand, within A4249_RS05255at 1083.217 kb on - strand, within A4249_RS05255at 1083.324 kb on + strand, within A4249_RS05255at 1083.324 kb on + strand, within A4249_RS05255at 1083.324 kb on + strand, within A4249_RS05255at 1083.324 kb on + strand, within A4249_RS05255at 1083.324 kb on + strand, within A4249_RS05255at 1083.325 kb on - strand, within A4249_RS05255at 1083.325 kb on - strand, within A4249_RS05255at 1083.325 kb on - strand, within A4249_RS05255at 1083.325 kb on - strand, within A4249_RS05255at 1083.325 kb on - strand, within A4249_RS05255at 1083.325 kb on - strand, within A4249_RS05255at 1083.477 kb on + strand, within A4249_RS05255at 1083.478 kb on - strand, within A4249_RS05255at 1083.483 kb on + strand, within A4249_RS05255at 1083.484 kb on - strand, within A4249_RS05255at 1083.484 kb on - strand, within A4249_RS05255at 1083.484 kb on - strand, within A4249_RS05255at 1083.484 kb on - strand, within A4249_RS05255at 1083.484 kb on - strand, within A4249_RS05255at 1083.484 kb on - strand, within A4249_RS05255at 1083.537 kb on + strand, within A4249_RS05255at 1083.537 kb on + strand, within A4249_RS05255at 1083.538 kb on - strand, within A4249_RS05255at 1083.552 kb on + strand, within A4249_RS05255at 1083.552 kb on + strand, within A4249_RS05255at 1083.552 kb on + strand, within A4249_RS05255at 1083.552 kb on + strand, within A4249_RS05255at 1083.552 kb on + strand, within A4249_RS05255at 1083.552 kb on + strand, within A4249_RS05255at 1083.552 kb on + strand, within A4249_RS05255at 1083.552 kb on + strand, within A4249_RS05255at 1083.553 kb on - strand, within A4249_RS05255at 1083.553 kb on - strand, within A4249_RS05255at 1083.553 kb on - strand, within A4249_RS05255at 1083.553 kb on - strand, within A4249_RS05255at 1083.553 kb on - strand, within A4249_RS05255at 1083.553 kb on - strand, within A4249_RS05255at 1083.553 kb on - strand, within A4249_RS05255at 1083.678 kb on + strandat 1083.775 kb on + strand, within A4249_RS05260at 1083.775 kb on + strand, within A4249_RS05260at 1083.775 kb on + strand, within A4249_RS05260at 1083.775 kb on + strand, within A4249_RS05260at 1083.775 kb on + strand, within A4249_RS05260at 1083.775 kb on + strand, within A4249_RS05260at 1083.775 kb on + strand, within A4249_RS05260at 1083.775 kb on + strand, within A4249_RS05260at 1083.775 kb on + strand, within A4249_RS05260at 1083.775 kb on + strand, within A4249_RS05260at 1083.776 kb on - strand, within A4249_RS05260at 1083.776 kb on - strand, within A4249_RS05260at 1083.776 kb on - strand, within A4249_RS05260at 1083.776 kb on - strand, within A4249_RS05260at 1083.776 kb on - strand, within A4249_RS05260at 1083.776 kb on - strand, within A4249_RS05260at 1083.776 kb on - strand, within A4249_RS05260at 1083.776 kb on - strand, within A4249_RS05260at 1083.776 kb on - strand, within A4249_RS05260at 1083.776 kb on - strand, within A4249_RS05260at 1083.888 kb on + strand, within A4249_RS05260at 1083.888 kb on + strand, within A4249_RS05260at 1083.889 kb on - strand, within A4249_RS05260at 1083.889 kb on - strand, within A4249_RS05260at 1083.889 kb on - strand, within A4249_RS05260at 1083.936 kb on + strand, within A4249_RS05260

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine 0.74 mM (C)
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1,080,895 + A4249_RS05240 0.80 +0.2
1,080,895 + A4249_RS05240 0.80 -0.1
1,080,895 + A4249_RS05240 0.80 +0.5
1,080,896 - A4249_RS05240 0.80 +0.2
1,080,898 - A4249_RS05240 0.80 +0.2
1,081,122 + A4249_RS05245 0.12 -0.1
1,081,123 - A4249_RS05245 0.12 -0.5
1,081,162 + A4249_RS05245 0.19 -0.7
1,081,162 + A4249_RS05245 0.19 +1.6
1,081,162 + A4249_RS05245 0.19 +1.3
1,081,162 + A4249_RS05245 0.19 -0.5
1,081,162 + A4249_RS05245 0.19 -1.3
1,081,162 + A4249_RS05245 0.19 +0.4
1,081,162 + A4249_RS05245 0.19 -0.1
1,081,162 + A4249_RS05245 0.19 +0.3
1,081,163 - A4249_RS05245 0.19 -0.0
1,081,163 - A4249_RS05245 0.19 -0.1
1,081,163 - A4249_RS05245 0.19 -0.6
1,081,163 - A4249_RS05245 0.19 -1.8
1,081,163 - A4249_RS05245 0.19 +0.3
1,081,163 - A4249_RS05245 0.19 -0.7
1,081,163 - A4249_RS05245 0.19 +0.5
1,081,163 - A4249_RS05245 0.19 -0.5
1,081,163 - A4249_RS05245 0.19 +0.1
1,081,163 - A4249_RS05245 0.19 +0.1
1,081,163 - A4249_RS05245 0.19 +0.3
1,081,163 - A4249_RS05245 0.19 -0.8
1,081,163 - A4249_RS05245 0.19 +0.3
1,081,163 - A4249_RS05245 0.19 +0.0
1,081,163 - A4249_RS05245 0.19 +0.2
1,081,237 + A4249_RS05245 0.32 +0.1
1,081,261 + A4249_RS05245 0.36 +1.1
1,081,350 - A4249_RS05245 0.52 -1.5
1,081,350 - A4249_RS05245 0.52 -0.2
1,081,602 + -0.5
1,081,617 - -0.1
1,081,617 - -0.1
1,081,617 - +0.2
1,081,617 - +0.8
1,081,653 + +0.7
1,081,654 - +0.4
1,081,912 + +0.7
1,081,912 + -0.7
1,081,912 + +1.4
1,081,912 + +0.1
1,081,912 + -0.8
1,081,912 + +1.1
1,081,912 + -0.6
1,081,912 + +0.1
1,081,912 + -0.3
1,081,912 + -0.1
1,081,912 + -0.7
1,081,912 + +0.6
1,081,913 - +0.3
1,081,913 - -1.0
1,081,913 - -1.1
1,081,913 - +0.4
1,081,913 - +0.2
1,082,008 + A4249_RS05250 0.13 -0.4
1,082,008 + A4249_RS05250 0.13 -0.5
1,082,008 + A4249_RS05250 0.13 +0.4
1,082,009 - A4249_RS05250 0.13 -0.9
1,082,009 - A4249_RS05250 0.13 -1.5
1,082,009 - A4249_RS05250 0.13 +0.0
1,082,009 - A4249_RS05250 0.13 -0.4
1,082,095 + A4249_RS05250 0.21 +0.0
1,082,095 + A4249_RS05250 0.21 +0.3
1,082,095 + A4249_RS05250 0.21 -0.9
1,082,096 - A4249_RS05250 0.21 -0.1
1,082,096 - A4249_RS05250 0.21 +0.0
1,082,317 + A4249_RS05250 0.40 -0.0
1,082,317 + A4249_RS05250 0.40 +0.1
1,082,317 + A4249_RS05250 0.40 -1.0
1,082,317 + A4249_RS05250 0.40 +1.4
1,082,317 + A4249_RS05250 0.40 -2.0
1,082,317 + A4249_RS05250 0.40 -0.5
1,082,317 + A4249_RS05250 0.40 -2.0
1,082,317 + A4249_RS05250 0.40 +0.2
1,082,317 + A4249_RS05250 0.40 +0.3
1,082,317 + A4249_RS05250 0.40 -0.1
1,082,317 + A4249_RS05250 0.40 +1.9
1,082,317 + A4249_RS05250 0.40 +0.0
1,082,317 + A4249_RS05250 0.40 +0.2
1,082,317 + A4249_RS05250 0.40 -0.3
1,082,317 + A4249_RS05250 0.40 -0.5
1,082,318 - A4249_RS05250 0.40 +0.5
1,082,318 - A4249_RS05250 0.40 -0.4
1,082,318 - A4249_RS05250 0.40 +0.3
1,082,406 + A4249_RS05250 0.47 -1.6
1,082,406 + A4249_RS05250 0.47 -0.6
1,082,407 - A4249_RS05250 0.47 -0.0
1,082,585 - A4249_RS05250 0.62 -0.5
1,082,599 + A4249_RS05250 0.63 +0.2
1,082,599 + A4249_RS05250 0.63 +0.0
1,082,599 + A4249_RS05250 0.63 -0.7
1,082,599 + A4249_RS05250 0.63 +0.9
1,082,599 + A4249_RS05250 0.63 -1.0
1,082,599 + A4249_RS05250 0.63 +0.4
1,082,599 + A4249_RS05250 0.63 -1.6
1,082,600 - A4249_RS05250 0.64 -0.2
1,082,600 - A4249_RS05250 0.64 +0.4
1,082,600 - A4249_RS05250 0.64 -0.6
1,082,600 - A4249_RS05250 0.64 -0.2
1,082,600 - A4249_RS05250 0.64 -0.5
1,082,600 - A4249_RS05250 0.64 +0.2
1,082,600 - A4249_RS05250 0.64 +0.3
1,082,671 + A4249_RS05250 0.70 -2.1
1,082,671 + A4249_RS05250 0.70 -1.4
1,082,672 - A4249_RS05250 0.70 -0.2
1,082,672 - A4249_RS05250 0.70 +0.8
1,082,892 - A4249_RS05250 0.88 +0.0
1,082,896 + A4249_RS05250 0.89 +0.4
1,082,896 + A4249_RS05250 0.89 +0.7
1,082,896 + A4249_RS05250 0.89 +0.3
1,082,897 - A4249_RS05250 0.89 +0.3
1,082,897 - A4249_RS05250 0.89 -0.2
1,082,933 + +0.3
1,083,216 + A4249_RS05255 0.30 -0.2
1,083,216 + A4249_RS05255 0.30 +1.0
1,083,217 - A4249_RS05255 0.30 +0.4
1,083,217 - A4249_RS05255 0.30 +0.4
1,083,217 - A4249_RS05255 0.30 -0.1
1,083,217 - A4249_RS05255 0.30 +0.6
1,083,324 + A4249_RS05255 0.49 -0.1
1,083,324 + A4249_RS05255 0.49 +0.9
1,083,324 + A4249_RS05255 0.49 -1.7
1,083,324 + A4249_RS05255 0.49 -0.1
1,083,324 + A4249_RS05255 0.49 -0.1
1,083,325 - A4249_RS05255 0.49 -0.2
1,083,325 - A4249_RS05255 0.49 +0.1
1,083,325 - A4249_RS05255 0.49 +0.1
1,083,325 - A4249_RS05255 0.49 +0.4
1,083,325 - A4249_RS05255 0.49 +0.5
1,083,325 - A4249_RS05255 0.49 -0.2
1,083,477 + A4249_RS05255 0.76 -0.3
1,083,478 - A4249_RS05255 0.76 -0.4
1,083,483 + A4249_RS05255 0.77 +0.3
1,083,484 - A4249_RS05255 0.77 +1.9
1,083,484 - A4249_RS05255 0.77 -0.4
1,083,484 - A4249_RS05255 0.77 +0.2
1,083,484 - A4249_RS05255 0.77 -1.2
1,083,484 - A4249_RS05255 0.77 -0.0
1,083,484 - A4249_RS05255 0.77 +1.1
1,083,537 + A4249_RS05255 0.86 -1.0
1,083,537 + A4249_RS05255 0.86 +0.7
1,083,538 - A4249_RS05255 0.87 -1.0
1,083,552 + A4249_RS05255 0.89 +0.2
1,083,552 + A4249_RS05255 0.89 +0.2
1,083,552 + A4249_RS05255 0.89 -0.1
1,083,552 + A4249_RS05255 0.89 +0.6
1,083,552 + A4249_RS05255 0.89 +0.9
1,083,552 + A4249_RS05255 0.89 +0.4
1,083,552 + A4249_RS05255 0.89 -0.1
1,083,552 + A4249_RS05255 0.89 -0.2
1,083,553 - A4249_RS05255 0.89 +0.5
1,083,553 - A4249_RS05255 0.89 +0.3
1,083,553 - A4249_RS05255 0.89 +0.1
1,083,553 - A4249_RS05255 0.89 -0.2
1,083,553 - A4249_RS05255 0.89 +0.8
1,083,553 - A4249_RS05255 0.89 +0.9
1,083,553 - A4249_RS05255 0.89 -0.1
1,083,678 + -0.5
1,083,775 + A4249_RS05260 0.22 -0.3
1,083,775 + A4249_RS05260 0.22 -0.4
1,083,775 + A4249_RS05260 0.22 -1.0
1,083,775 + A4249_RS05260 0.22 +0.8
1,083,775 + A4249_RS05260 0.22 -0.3
1,083,775 + A4249_RS05260 0.22 +0.3
1,083,775 + A4249_RS05260 0.22 -0.2
1,083,775 + A4249_RS05260 0.22 +0.2
1,083,775 + A4249_RS05260 0.22 +0.4
1,083,775 + A4249_RS05260 0.22 -0.2
1,083,776 - A4249_RS05260 0.22 -0.4
1,083,776 - A4249_RS05260 0.22 -0.0
1,083,776 - A4249_RS05260 0.22 -0.2
1,083,776 - A4249_RS05260 0.22 -0.2
1,083,776 - A4249_RS05260 0.22 +0.1
1,083,776 - A4249_RS05260 0.22 +0.5
1,083,776 - A4249_RS05260 0.22 -0.5
1,083,776 - A4249_RS05260 0.22 -0.0
1,083,776 - A4249_RS05260 0.22 +0.5
1,083,776 - A4249_RS05260 0.22 -0.7
1,083,888 + A4249_RS05260 0.43 -0.3
1,083,888 + A4249_RS05260 0.43 +0.0
1,083,889 - A4249_RS05260 0.43 -0.3
1,083,889 - A4249_RS05260 0.43 -0.4
1,083,889 - A4249_RS05260 0.43 -0.5
1,083,936 + A4249_RS05260 0.52 +0.4

Or see this region's nucleotide sequence