Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS04955

Experiment: Adenine 0.74 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS04950 and A4249_RS04955 are separated by 61 nucleotidesA4249_RS04955 and A4249_RS04960 are separated by 33 nucleotides A4249_RS04950: A4249_RS04950 - dihydrolipoyl dehydrogenase, at 1,028,809 to 1,030,215 _RS04950 A4249_RS04955: A4249_RS04955 - DUF3606 domain-containing protein, at 1,030,277 to 1,030,459 _RS04955 A4249_RS04960: A4249_RS04960 - UvrD-helicase domain-containing protein, at 1,030,493 to 1,032,847 _RS04960 Position (kb) 1030 1031Strain fitness (log2 ratio) -1 0 1at 1030.213 kb on + strandat 1030.213 kb on + strandat 1030.213 kb on + strandat 1030.213 kb on + strandat 1030.213 kb on + strandat 1030.214 kb on - strandat 1030.214 kb on - strandat 1030.214 kb on - strandat 1030.214 kb on - strandat 1030.214 kb on - strandat 1030.214 kb on - strandat 1030.214 kb on - strandat 1030.214 kb on - strandat 1030.214 kb on - strandat 1030.306 kb on + strand, within A4249_RS04955at 1030.307 kb on - strand, within A4249_RS04955at 1030.383 kb on + strand, within A4249_RS04955at 1030.384 kb on - strand, within A4249_RS04955at 1030.384 kb on - strand, within A4249_RS04955at 1030.384 kb on - strand, within A4249_RS04955at 1030.482 kb on - strandat 1030.833 kb on + strand, within A4249_RS04960at 1030.833 kb on + strand, within A4249_RS04960at 1030.834 kb on - strand, within A4249_RS04960at 1030.834 kb on - strand, within A4249_RS04960at 1030.836 kb on + strand, within A4249_RS04960at 1031.200 kb on - strand, within A4249_RS04960at 1031.299 kb on + strand, within A4249_RS04960

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine 0.74 mM (C)
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1,030,213 + -0.1
1,030,213 + -0.3
1,030,213 + +0.0
1,030,213 + +0.3
1,030,213 + -0.2
1,030,214 - +0.3
1,030,214 - +0.2
1,030,214 - +0.4
1,030,214 - +0.3
1,030,214 - -0.1
1,030,214 - +1.3
1,030,214 - +0.2
1,030,214 - -0.5
1,030,214 - +0.6
1,030,306 + A4249_RS04955 0.16 -0.6
1,030,307 - A4249_RS04955 0.16 -0.4
1,030,383 + A4249_RS04955 0.58 -0.1
1,030,384 - A4249_RS04955 0.58 +0.4
1,030,384 - A4249_RS04955 0.58 -0.5
1,030,384 - A4249_RS04955 0.58 -0.7
1,030,482 - +0.0
1,030,833 + A4249_RS04960 0.14 +0.4
1,030,833 + A4249_RS04960 0.14 +0.5
1,030,834 - A4249_RS04960 0.14 -0.4
1,030,834 - A4249_RS04960 0.14 -0.5
1,030,836 + A4249_RS04960 0.15 -0.1
1,031,200 - A4249_RS04960 0.30 -0.5
1,031,299 + A4249_RS04960 0.34 +1.1

Or see this region's nucleotide sequence