Experiment: Adenine 0.74 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt A4249_RS04550 and A4249_RS04555 are separated by 41 nucleotides A4249_RS04555 and A4249_RS04560 are separated by 85 nucleotides A4249_RS04560 and A4249_RS04565 are separated by 158 nucleotides A4249_RS04565 and A4249_RS04570 overlap by 4 nucleotides
A4249_RS04550: A4249_RS04550 - YdeI/OmpD-associated family protein, at 945,297 to 945,551
_RS04550
A4249_RS04555: A4249_RS04555 - transporter, at 945,593 to 946,405
_RS04555
A4249_RS04560: A4249_RS04560 - alpha/beta hydrolase, at 946,491 to 947,141
_RS04560
A4249_RS04565: A4249_RS04565 - Rrf2 family transcriptional regulator, at 947,300 to 947,779
_RS04565
A4249_RS04570: A4249_RS04570 - cysteine desulfurase family protein, at 947,776 to 948,915
_RS04570
Position (kb) 946
947
948 Strain fitness (log2 ratio) -1
0
1
2 at 945.555 kb on + strand at 945.555 kb on + strand at 945.555 kb on + strand at 945.555 kb on + strand at 945.555 kb on + strand at 945.555 kb on + strand at 945.555 kb on + strand at 945.555 kb on + strand at 945.555 kb on + strand at 945.556 kb on - strand at 945.556 kb on - strand at 945.556 kb on - strand at 945.556 kb on - strand at 945.556 kb on - strand at 945.556 kb on - strand at 945.595 kb on - strand at 945.826 kb on + strand, within A4249_RS04555 at 945.826 kb on + strand, within A4249_RS04555 at 945.826 kb on + strand, within A4249_RS04555 at 945.826 kb on + strand, within A4249_RS04555 at 945.826 kb on + strand, within A4249_RS04555 at 945.826 kb on + strand, within A4249_RS04555 at 945.826 kb on + strand, within A4249_RS04555 at 945.826 kb on + strand, within A4249_RS04555 at 945.826 kb on + strand, within A4249_RS04555 at 945.826 kb on + strand, within A4249_RS04555 at 945.827 kb on - strand, within A4249_RS04555 at 945.827 kb on - strand, within A4249_RS04555 at 945.827 kb on - strand, within A4249_RS04555 at 945.827 kb on - strand, within A4249_RS04555 at 945.827 kb on - strand, within A4249_RS04555 at 945.827 kb on - strand, within A4249_RS04555 at 945.827 kb on - strand, within A4249_RS04555 at 945.827 kb on - strand, within A4249_RS04555 at 945.827 kb on - strand, within A4249_RS04555 at 945.828 kb on + strand, within A4249_RS04555 at 945.828 kb on + strand, within A4249_RS04555 at 945.828 kb on + strand, within A4249_RS04555 at 945.829 kb on - strand, within A4249_RS04555 at 945.829 kb on - strand, within A4249_RS04555 at 945.829 kb on - strand, within A4249_RS04555 at 945.829 kb on - strand, within A4249_RS04555 at 945.829 kb on - strand, within A4249_RS04555 at 946.477 kb on + strand at 947.184 kb on - strand at 947.256 kb on + strand at 947.256 kb on + strand at 947.257 kb on - strand at 947.257 kb on - strand at 947.435 kb on + strand, within A4249_RS04565 at 947.435 kb on + strand, within A4249_RS04565 at 947.435 kb on + strand, within A4249_RS04565 at 947.435 kb on + strand, within A4249_RS04565 at 947.435 kb on + strand, within A4249_RS04565 at 947.684 kb on + strand, within A4249_RS04565 at 947.684 kb on + strand, within A4249_RS04565
Per-strain Table
Position Strand Gene LocusTag Fraction Adenine 0.74 mM (C) remove 945,555 + -0.6 945,555 + -0.6 945,555 + +0.2 945,555 + +0.1 945,555 + -0.4 945,555 + -0.0 945,555 + +1.5 945,555 + +0.1 945,555 + +0.6 945,556 - +0.3 945,556 - -0.6 945,556 - -0.1 945,556 - +0.1 945,556 - -0.6 945,556 - -0.2 945,595 - +0.3 945,826 + A4249_RS04555 0.29 -1.5 945,826 + A4249_RS04555 0.29 -0.6 945,826 + A4249_RS04555 0.29 +0.7 945,826 + A4249_RS04555 0.29 -0.7 945,826 + A4249_RS04555 0.29 +0.5 945,826 + A4249_RS04555 0.29 -0.2 945,826 + A4249_RS04555 0.29 +0.8 945,826 + A4249_RS04555 0.29 -0.1 945,826 + A4249_RS04555 0.29 +0.4 945,826 + A4249_RS04555 0.29 -0.6 945,827 - A4249_RS04555 0.29 +0.5 945,827 - A4249_RS04555 0.29 +0.2 945,827 - A4249_RS04555 0.29 +0.8 945,827 - A4249_RS04555 0.29 +1.9 945,827 - A4249_RS04555 0.29 +0.3 945,827 - A4249_RS04555 0.29 -0.3 945,827 - A4249_RS04555 0.29 +0.8 945,827 - A4249_RS04555 0.29 +0.7 945,827 - A4249_RS04555 0.29 +0.5 945,828 + A4249_RS04555 0.29 +0.1 945,828 + A4249_RS04555 0.29 +0.0 945,828 + A4249_RS04555 0.29 +0.2 945,829 - A4249_RS04555 0.29 +1.1 945,829 - A4249_RS04555 0.29 -0.2 945,829 - A4249_RS04555 0.29 +0.5 945,829 - A4249_RS04555 0.29 +0.8 945,829 - A4249_RS04555 0.29 +0.0 946,477 + -1.5 947,184 - +0.2 947,256 + +1.6 947,256 + -0.7 947,257 - +0.1 947,257 - -0.0 947,435 + A4249_RS04565 0.28 -0.4 947,435 + A4249_RS04565 0.28 -0.6 947,435 + A4249_RS04565 0.28 +0.2 947,435 + A4249_RS04565 0.28 -1.4 947,435 + A4249_RS04565 0.28 +0.2 947,684 + A4249_RS04565 0.80 -0.4 947,684 + A4249_RS04565 0.80 -0.5
Or see this region's nucleotide sequence