Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS04205

Experiment: Adenine 0.74 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS04200 and A4249_RS04205 are separated by 23 nucleotidesA4249_RS04205 and A4249_RS04210 are separated by 29 nucleotidesA4249_RS04210 and A4249_RS04215 overlap by 1 nucleotides A4249_RS04200: A4249_RS04200 - pseudouridine synthase, at 869,811 to 871,364 _RS04200 A4249_RS04205: A4249_RS04205 - GFA family protein, at 871,388 to 871,798 _RS04205 A4249_RS04210: A4249_RS04210 - TMEM175 family protein, at 871,828 to 872,469 _RS04210 A4249_RS04215: A4249_RS04215 - 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD, at 872,469 to 873,044 _RS04215 Position (kb) 871 872Strain fitness (log2 ratio) -1 0 1at 870.492 kb on + strand, within A4249_RS04200at 870.573 kb on + strand, within A4249_RS04200at 870.573 kb on + strand, within A4249_RS04200at 870.573 kb on + strand, within A4249_RS04200at 870.574 kb on - strand, within A4249_RS04200at 870.744 kb on + strand, within A4249_RS04200at 870.828 kb on + strand, within A4249_RS04200at 870.828 kb on + strand, within A4249_RS04200at 870.828 kb on + strand, within A4249_RS04200at 870.828 kb on + strand, within A4249_RS04200at 870.829 kb on - strand, within A4249_RS04200at 870.829 kb on - strand, within A4249_RS04200at 870.829 kb on - strand, within A4249_RS04200at 870.830 kb on + strand, within A4249_RS04200at 870.830 kb on + strand, within A4249_RS04200at 870.831 kb on - strand, within A4249_RS04200at 870.860 kb on + strand, within A4249_RS04200at 870.860 kb on + strand, within A4249_RS04200at 870.860 kb on + strand, within A4249_RS04200at 870.861 kb on - strand, within A4249_RS04200at 870.861 kb on - strand, within A4249_RS04200at 871.556 kb on + strand, within A4249_RS04205at 871.556 kb on + strand, within A4249_RS04205at 871.556 kb on + strand, within A4249_RS04205at 871.556 kb on + strand, within A4249_RS04205at 871.556 kb on + strand, within A4249_RS04205at 871.556 kb on + strand, within A4249_RS04205at 871.556 kb on + strand, within A4249_RS04205at 871.556 kb on + strand, within A4249_RS04205at 871.556 kb on + strand, within A4249_RS04205at 871.556 kb on + strand, within A4249_RS04205at 871.556 kb on + strand, within A4249_RS04205at 871.556 kb on + strand, within A4249_RS04205at 871.557 kb on - strand, within A4249_RS04205at 871.557 kb on - strand, within A4249_RS04205at 871.557 kb on - strand, within A4249_RS04205at 871.557 kb on - strand, within A4249_RS04205at 871.557 kb on - strand, within A4249_RS04205at 871.557 kb on - strand, within A4249_RS04205at 871.557 kb on - strand, within A4249_RS04205at 871.557 kb on - strand, within A4249_RS04205at 871.557 kb on - strand, within A4249_RS04205at 871.557 kb on - strand, within A4249_RS04205at 871.557 kb on - strand, within A4249_RS04205at 871.557 kb on - strand, within A4249_RS04205at 871.557 kb on - strand, within A4249_RS04205at 871.557 kb on - strand, within A4249_RS04205at 871.724 kb on + strand, within A4249_RS04205at 871.724 kb on + strand, within A4249_RS04205at 871.724 kb on + strand, within A4249_RS04205at 871.724 kb on + strand, within A4249_RS04205at 871.724 kb on + strand, within A4249_RS04205at 871.725 kb on - strand, within A4249_RS04205at 871.725 kb on - strand, within A4249_RS04205at 871.725 kb on - strand, within A4249_RS04205at 872.162 kb on - strand, within A4249_RS04210at 872.162 kb on - strand, within A4249_RS04210at 872.197 kb on + strand, within A4249_RS04210at 872.197 kb on + strand, within A4249_RS04210at 872.197 kb on + strand, within A4249_RS04210at 872.197 kb on + strand, within A4249_RS04210at 872.197 kb on + strand, within A4249_RS04210at 872.197 kb on + strand, within A4249_RS04210at 872.198 kb on - strand, within A4249_RS04210at 872.198 kb on - strand, within A4249_RS04210at 872.198 kb on - strand, within A4249_RS04210at 872.198 kb on - strand, within A4249_RS04210at 872.198 kb on - strand, within A4249_RS04210at 872.242 kb on + strand, within A4249_RS04210at 872.242 kb on + strand, within A4249_RS04210at 872.628 kb on + strand, within A4249_RS04215at 872.628 kb on + strand, within A4249_RS04215at 872.628 kb on + strand, within A4249_RS04215at 872.742 kb on + strand, within A4249_RS04215at 872.743 kb on - strand, within A4249_RS04215

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine 0.74 mM (C)
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870,492 + A4249_RS04200 0.44 +1.3
870,573 + A4249_RS04200 0.49 +0.4
870,573 + A4249_RS04200 0.49 -0.4
870,573 + A4249_RS04200 0.49 -0.5
870,574 - A4249_RS04200 0.49 +0.5
870,744 + A4249_RS04200 0.60 +0.7
870,828 + A4249_RS04200 0.65 +0.3
870,828 + A4249_RS04200 0.65 -1.1
870,828 + A4249_RS04200 0.65 -0.2
870,828 + A4249_RS04200 0.65 -0.3
870,829 - A4249_RS04200 0.66 +0.1
870,829 - A4249_RS04200 0.66 -1.1
870,829 - A4249_RS04200 0.66 +0.2
870,830 + A4249_RS04200 0.66 +0.8
870,830 + A4249_RS04200 0.66 -1.2
870,831 - A4249_RS04200 0.66 -1.6
870,860 + A4249_RS04200 0.68 +0.8
870,860 + A4249_RS04200 0.68 -0.0
870,860 + A4249_RS04200 0.68 +1.0
870,861 - A4249_RS04200 0.68 -0.3
870,861 - A4249_RS04200 0.68 -0.5
871,556 + A4249_RS04205 0.41 +0.7
871,556 + A4249_RS04205 0.41 -0.2
871,556 + A4249_RS04205 0.41 -0.4
871,556 + A4249_RS04205 0.41 +0.2
871,556 + A4249_RS04205 0.41 +0.2
871,556 + A4249_RS04205 0.41 -0.8
871,556 + A4249_RS04205 0.41 +0.6
871,556 + A4249_RS04205 0.41 -0.4
871,556 + A4249_RS04205 0.41 -0.0
871,556 + A4249_RS04205 0.41 -0.1
871,556 + A4249_RS04205 0.41 -0.3
871,556 + A4249_RS04205 0.41 +0.5
871,557 - A4249_RS04205 0.41 -0.2
871,557 - A4249_RS04205 0.41 -0.5
871,557 - A4249_RS04205 0.41 -0.6
871,557 - A4249_RS04205 0.41 +0.2
871,557 - A4249_RS04205 0.41 -1.4
871,557 - A4249_RS04205 0.41 +0.0
871,557 - A4249_RS04205 0.41 -0.8
871,557 - A4249_RS04205 0.41 +0.0
871,557 - A4249_RS04205 0.41 +1.3
871,557 - A4249_RS04205 0.41 -1.0
871,557 - A4249_RS04205 0.41 -1.6
871,557 - A4249_RS04205 0.41 +0.2
871,557 - A4249_RS04205 0.41 -0.3
871,557 - A4249_RS04205 0.41 +0.3
871,724 + A4249_RS04205 0.82 +0.1
871,724 + A4249_RS04205 0.82 +0.0
871,724 + A4249_RS04205 0.82 -0.4
871,724 + A4249_RS04205 0.82 -0.7
871,724 + A4249_RS04205 0.82 -0.7
871,725 - A4249_RS04205 0.82 -0.3
871,725 - A4249_RS04205 0.82 +1.0
871,725 - A4249_RS04205 0.82 +0.1
872,162 - A4249_RS04210 0.52 -0.2
872,162 - A4249_RS04210 0.52 +1.4
872,197 + A4249_RS04210 0.57 -0.7
872,197 + A4249_RS04210 0.57 -0.2
872,197 + A4249_RS04210 0.57 -0.3
872,197 + A4249_RS04210 0.57 +0.2
872,197 + A4249_RS04210 0.57 -0.8
872,197 + A4249_RS04210 0.57 +0.3
872,198 - A4249_RS04210 0.58 +0.3
872,198 - A4249_RS04210 0.58 -0.8
872,198 - A4249_RS04210 0.58 +0.3
872,198 - A4249_RS04210 0.58 -0.7
872,198 - A4249_RS04210 0.58 -1.1
872,242 + A4249_RS04210 0.64 +1.7
872,242 + A4249_RS04210 0.64 -0.6
872,628 + A4249_RS04215 0.28 -0.5
872,628 + A4249_RS04215 0.28 -0.7
872,628 + A4249_RS04215 0.28 -1.5
872,742 + A4249_RS04215 0.47 +0.3
872,743 - A4249_RS04215 0.48 +0.4

Or see this region's nucleotide sequence