Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS02325

Experiment: Adenine 0.74 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS02310 and A4249_RS02315 are separated by 221 nucleotidesA4249_RS02315 and A4249_RS02320 are separated by 83 nucleotidesA4249_RS02320 and A4249_RS02325 are separated by 200 nucleotidesA4249_RS02325 and A4249_RS02330 are separated by 87 nucleotidesA4249_RS02330 and A4249_RS02335 are separated by 87 nucleotidesA4249_RS02335 and A4249_RS02340 are separated by 172 nucleotides A4249_RS02310: A4249_RS02310 - 16S ribosomal RNA, at 488,282 to 489,741 _RS02310 A4249_RS02315: A4249_RS02315 - tRNA-Ile, at 489,963 to 490,039 _RS02315 A4249_RS02320: A4249_RS02320 - tRNA-Ala, at 490,123 to 490,198 _RS02320 A4249_RS02325: A4249_RS02325 - 23S ribosomal RNA, at 490,399 to 493,177 _RS02325 A4249_RS02330: A4249_RS02330 - 5S ribosomal RNA, at 493,265 to 493,379 _RS02330 A4249_RS02335: A4249_RS02335 - tRNA-Met, at 493,467 to 493,543 _RS02335 A4249_RS02340: A4249_RS02340 - helicase-related protein, at 493,716 to 497,021 _RS02340 Position (kb) 490 491 492 493 494Strain fitness (log2 ratio) -1 0 1at 491.424 kb on + strand, within A4249_RS02325at 491.445 kb on - strand, within A4249_RS02325at 491.850 kb on + strand, within A4249_RS02325at 491.865 kb on + strand, within A4249_RS02325at 491.865 kb on + strand, within A4249_RS02325at 493.611 kb on - strandat 493.638 kb on - strandat 493.638 kb on - strandat 493.638 kb on - strandat 494.062 kb on + strand, within A4249_RS02340at 494.062 kb on + strand, within A4249_RS02340at 494.062 kb on + strand, within A4249_RS02340at 494.062 kb on + strand, within A4249_RS02340at 494.062 kb on + strand, within A4249_RS02340at 494.062 kb on + strand, within A4249_RS02340at 494.063 kb on - strand, within A4249_RS02340

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine 0.74 mM (C)
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491,424 + A4249_RS02325 0.37 -0.9
491,445 - A4249_RS02325 0.38 +0.1
491,850 + A4249_RS02325 0.52 -1.0
491,865 + A4249_RS02325 0.53 -0.0
491,865 + A4249_RS02325 0.53 -1.2
493,611 - -0.3
493,638 - +0.3
493,638 - -0.7
493,638 - -0.4
494,062 + A4249_RS02340 0.10 +0.2
494,062 + A4249_RS02340 0.10 -0.1
494,062 + A4249_RS02340 0.10 +0.1
494,062 + A4249_RS02340 0.10 +0.3
494,062 + A4249_RS02340 0.10 -0.8
494,062 + A4249_RS02340 0.10 -0.4
494,063 - A4249_RS02340 0.10 -1.7

Or see this region's nucleotide sequence