Experiment: Adenine 0.74 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt A4249_RS01210 and A4249_RS01215 overlap by 4 nucleotides A4249_RS01215 and A4249_RS01220 are separated by 56 nucleotides A4249_RS01220 and A4249_RS17020 are separated by 26 nucleotides A4249_RS17020 and A4249_RS01225 are separated by 26 nucleotides
A4249_RS01210: A4249_RS01210 - hypothetical protein, at 228,926 to 229,441
_RS01210
A4249_RS01215: A4249_RS01215 - hypothetical protein, at 229,438 to 229,779
_RS01215
A4249_RS01220: A4249_RS01220 - hypothetical protein, at 229,836 to 230,165
_RS01220
A4249_RS17020: A4249_RS17020 - hypothetical protein, at 230,192 to 230,326
_RS17020
A4249_RS01225: A4249_RS01225 - hypothetical protein, at 230,353 to 235,407
_RS01225
Position (kb) 229
230
231 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 228.845 kb on - strand at 228.845 kb on - strand at 228.845 kb on - strand at 228.871 kb on + strand at 228.871 kb on + strand at 228.871 kb on + strand at 228.872 kb on - strand at 228.872 kb on - strand at 228.872 kb on - strand at 228.872 kb on - strand at 228.872 kb on - strand at 228.872 kb on - strand at 228.977 kb on + strand at 228.977 kb on + strand at 228.977 kb on + strand at 228.977 kb on + strand at 229.228 kb on + strand, within A4249_RS01210 at 229.228 kb on + strand, within A4249_RS01210 at 229.228 kb on + strand, within A4249_RS01210 at 229.228 kb on + strand, within A4249_RS01210 at 229.228 kb on + strand, within A4249_RS01210 at 229.228 kb on + strand, within A4249_RS01210 at 229.228 kb on + strand, within A4249_RS01210 at 229.228 kb on + strand, within A4249_RS01210 at 229.228 kb on + strand, within A4249_RS01210 at 229.228 kb on + strand, within A4249_RS01210 at 229.228 kb on + strand, within A4249_RS01210 at 229.228 kb on + strand, within A4249_RS01210 at 229.229 kb on - strand, within A4249_RS01210 at 229.229 kb on - strand, within A4249_RS01210 at 229.229 kb on - strand, within A4249_RS01210 at 229.229 kb on - strand, within A4249_RS01210 at 229.229 kb on - strand, within A4249_RS01210 at 229.229 kb on - strand, within A4249_RS01210 at 229.229 kb on - strand, within A4249_RS01210 at 229.229 kb on - strand, within A4249_RS01210 at 229.229 kb on - strand, within A4249_RS01210 at 229.301 kb on + strand, within A4249_RS01210 at 229.302 kb on - strand, within A4249_RS01210 at 229.302 kb on - strand, within A4249_RS01210 at 229.302 kb on - strand, within A4249_RS01210 at 229.302 kb on - strand, within A4249_RS01210 at 229.302 kb on - strand, within A4249_RS01210 at 229.302 kb on - strand, within A4249_RS01210 at 229.347 kb on + strand, within A4249_RS01210 at 229.347 kb on + strand, within A4249_RS01210 at 229.347 kb on + strand, within A4249_RS01210 at 229.348 kb on - strand, within A4249_RS01210 at 229.348 kb on - strand, within A4249_RS01210 at 229.348 kb on - strand, within A4249_RS01210 at 229.348 kb on - strand, within A4249_RS01210 at 229.348 kb on - strand, within A4249_RS01210 at 229.362 kb on - strand, within A4249_RS01210 at 229.486 kb on - strand, within A4249_RS01215 at 229.486 kb on - strand, within A4249_RS01215 at 229.697 kb on + strand, within A4249_RS01215 at 229.697 kb on + strand, within A4249_RS01215 at 229.697 kb on + strand, within A4249_RS01215 at 229.827 kb on + strand at 229.827 kb on + strand at 230.095 kb on + strand, within A4249_RS01220 at 230.095 kb on + strand, within A4249_RS01220 at 230.095 kb on + strand, within A4249_RS01220 at 230.095 kb on + strand, within A4249_RS01220 at 230.108 kb on + strand, within A4249_RS01220 at 230.330 kb on + strand at 230.432 kb on + strand at 230.432 kb on + strand at 230.600 kb on + strand at 230.723 kb on + strand at 230.723 kb on + strand at 230.723 kb on + strand at 230.723 kb on + strand at 230.723 kb on + strand at 230.723 kb on + strand at 230.723 kb on + strand at 230.724 kb on - strand at 230.729 kb on + strand at 230.729 kb on + strand at 230.849 kb on + strand at 230.849 kb on + strand at 230.850 kb on - strand at 230.850 kb on - strand at 230.855 kb on + strand at 230.855 kb on + strand at 230.855 kb on + strand at 230.855 kb on + strand at 230.978 kb on + strand, within A4249_RS01225 at 230.979 kb on - strand, within A4249_RS01225 at 231.111 kb on + strand, within A4249_RS01225 at 231.112 kb on - strand, within A4249_RS01225 at 231.112 kb on - strand, within A4249_RS01225 at 231.112 kb on - strand, within A4249_RS01225
Per-strain Table
Position Strand Gene LocusTag Fraction Adenine 0.74 mM (C) remove 228,845 - +0.1 228,845 - +1.3 228,845 - +0.3 228,871 + -1.0 228,871 + +0.9 228,871 + +0.3 228,872 - -0.8 228,872 - -0.8 228,872 - -0.1 228,872 - +1.3 228,872 - -0.9 228,872 - +1.0 228,977 + +0.8 228,977 + -0.5 228,977 + +0.9 228,977 + +0.0 229,228 + A4249_RS01210 0.59 +0.1 229,228 + A4249_RS01210 0.59 -0.1 229,228 + A4249_RS01210 0.59 -0.2 229,228 + A4249_RS01210 0.59 -0.2 229,228 + A4249_RS01210 0.59 -0.8 229,228 + A4249_RS01210 0.59 -0.3 229,228 + A4249_RS01210 0.59 +1.1 229,228 + A4249_RS01210 0.59 +0.0 229,228 + A4249_RS01210 0.59 -1.0 229,228 + A4249_RS01210 0.59 -0.2 229,228 + A4249_RS01210 0.59 +0.6 229,228 + A4249_RS01210 0.59 -0.0 229,229 - A4249_RS01210 0.59 +0.2 229,229 - A4249_RS01210 0.59 -2.8 229,229 - A4249_RS01210 0.59 -1.4 229,229 - A4249_RS01210 0.59 -0.9 229,229 - A4249_RS01210 0.59 -0.2 229,229 - A4249_RS01210 0.59 +0.3 229,229 - A4249_RS01210 0.59 +0.5 229,229 - A4249_RS01210 0.59 +0.4 229,229 - A4249_RS01210 0.59 +0.5 229,301 + A4249_RS01210 0.73 -0.3 229,302 - A4249_RS01210 0.73 -0.2 229,302 - A4249_RS01210 0.73 +0.1 229,302 - A4249_RS01210 0.73 +0.2 229,302 - A4249_RS01210 0.73 +0.0 229,302 - A4249_RS01210 0.73 -0.1 229,302 - A4249_RS01210 0.73 +0.4 229,347 + A4249_RS01210 0.82 +1.0 229,347 + A4249_RS01210 0.82 +1.6 229,347 + A4249_RS01210 0.82 -1.0 229,348 - A4249_RS01210 0.82 -0.3 229,348 - A4249_RS01210 0.82 -0.4 229,348 - A4249_RS01210 0.82 -0.2 229,348 - A4249_RS01210 0.82 +0.3 229,348 - A4249_RS01210 0.82 +0.5 229,362 - A4249_RS01210 0.84 -1.1 229,486 - A4249_RS01215 0.14 -0.7 229,486 - A4249_RS01215 0.14 -0.9 229,697 + A4249_RS01215 0.76 +0.7 229,697 + A4249_RS01215 0.76 -0.0 229,697 + A4249_RS01215 0.76 +0.2 229,827 + +0.1 229,827 + +0.1 230,095 + A4249_RS01220 0.78 -0.3 230,095 + A4249_RS01220 0.78 -1.2 230,095 + A4249_RS01220 0.78 -0.4 230,095 + A4249_RS01220 0.78 -0.3 230,108 + A4249_RS01220 0.82 +0.1 230,330 + -0.4 230,432 + -0.2 230,432 + -0.6 230,600 + +0.4 230,723 + +0.8 230,723 + -1.4 230,723 + -1.4 230,723 + -1.2 230,723 + +0.1 230,723 + -0.4 230,723 + -0.3 230,724 - -0.5 230,729 + +0.7 230,729 + +0.2 230,849 + -0.0 230,849 + -0.5 230,850 - -0.9 230,850 - +0.8 230,855 + +0.6 230,855 + +0.8 230,855 + -0.2 230,855 + -1.0 230,978 + A4249_RS01225 0.12 +0.1 230,979 - A4249_RS01225 0.12 -1.5 231,111 + A4249_RS01225 0.15 +1.1 231,112 - A4249_RS01225 0.15 -0.1 231,112 - A4249_RS01225 0.15 -0.5 231,112 - A4249_RS01225 0.15 +0.6
Or see this region's nucleotide sequence