Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS00045

Experiment: Adenine 0.74 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS00035 and A4249_RS00040 are separated by 36 nucleotidesA4249_RS00040 and A4249_RS00045 are separated by 79 nucleotidesA4249_RS00045 and A4249_RS00050 are separated by 106 nucleotidesA4249_RS00050 and A4249_RS00055 overlap by 4 nucleotides A4249_RS00035: A4249_RS00035 - phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent), at 6,129 to 7,766 _RS00035 A4249_RS00040: A4249_RS00040 - neutral zinc metallopeptidase, at 7,803 to 8,654 _RS00040 A4249_RS00045: A4249_RS00045 - hypothetical protein, at 8,734 to 9,123 _RS00045 A4249_RS00050: A4249_RS00050 - type 1 glutamine amidotransferase, at 9,230 to 9,796 _RS00050 A4249_RS00055: A4249_RS00055 - methyltransferase, at 9,793 to 10,443 _RS00055 Position (kb) 8 9 10Strain fitness (log2 ratio) -2 -1 0 1at 7.970 kb on + strand, within A4249_RS00040at 7.970 kb on + strand, within A4249_RS00040at 7.970 kb on + strand, within A4249_RS00040at 7.970 kb on + strand, within A4249_RS00040at 7.970 kb on + strand, within A4249_RS00040at 7.971 kb on - strand, within A4249_RS00040at 8.050 kb on + strand, within A4249_RS00040at 8.050 kb on + strand, within A4249_RS00040at 8.051 kb on - strand, within A4249_RS00040at 8.051 kb on - strand, within A4249_RS00040at 8.083 kb on + strand, within A4249_RS00040at 8.084 kb on - strand, within A4249_RS00040at 8.084 kb on - strand, within A4249_RS00040at 8.084 kb on - strand, within A4249_RS00040at 8.191 kb on + strand, within A4249_RS00040at 8.191 kb on + strand, within A4249_RS00040at 8.191 kb on + strand, within A4249_RS00040at 8.191 kb on + strand, within A4249_RS00040at 8.191 kb on + strand, within A4249_RS00040at 8.191 kb on + strand, within A4249_RS00040at 8.192 kb on - strand, within A4249_RS00040at 8.192 kb on - strand, within A4249_RS00040at 8.192 kb on - strand, within A4249_RS00040at 8.192 kb on - strand, within A4249_RS00040at 8.192 kb on - strand, within A4249_RS00040at 8.192 kb on - strand, within A4249_RS00040at 8.192 kb on - strand, within A4249_RS00040at 8.192 kb on - strand, within A4249_RS00040at 8.192 kb on - strand, within A4249_RS00040at 8.192 kb on - strand, within A4249_RS00040at 8.263 kb on + strand, within A4249_RS00040at 8.263 kb on + strand, within A4249_RS00040at 8.263 kb on + strand, within A4249_RS00040at 8.264 kb on - strand, within A4249_RS00040at 8.287 kb on + strand, within A4249_RS00040at 8.287 kb on + strand, within A4249_RS00040at 8.288 kb on - strand, within A4249_RS00040at 8.288 kb on - strand, within A4249_RS00040at 8.288 kb on - strand, within A4249_RS00040at 8.288 kb on - strand, within A4249_RS00040at 8.288 kb on - strand, within A4249_RS00040at 8.288 kb on - strand, within A4249_RS00040at 8.288 kb on - strand, within A4249_RS00040at 8.288 kb on - strand, within A4249_RS00040at 8.315 kb on - strand, within A4249_RS00040at 8.315 kb on - strand, within A4249_RS00040at 8.344 kb on + strand, within A4249_RS00040at 8.345 kb on - strand, within A4249_RS00040at 8.368 kb on + strand, within A4249_RS00040at 8.403 kb on - strand, within A4249_RS00040at 8.403 kb on - strand, within A4249_RS00040at 8.403 kb on - strand, within A4249_RS00040at 8.403 kb on - strand, within A4249_RS00040at 8.542 kb on + strand, within A4249_RS00040at 8.543 kb on - strand, within A4249_RS00040at 8.659 kb on + strandat 8.659 kb on + strandat 8.681 kb on + strandat 8.682 kb on - strandat 8.682 kb on - strandat 8.682 kb on - strandat 8.686 kb on + strandat 8.686 kb on + strandat 8.686 kb on + strandat 8.686 kb on + strandat 8.687 kb on - strandat 8.687 kb on - strandat 8.687 kb on - strandat 8.840 kb on + strand, within A4249_RS00045at 8.840 kb on + strand, within A4249_RS00045at 8.841 kb on - strand, within A4249_RS00045at 8.841 kb on - strand, within A4249_RS00045at 8.841 kb on - strand, within A4249_RS00045at 9.036 kb on - strand, within A4249_RS00045at 9.036 kb on - strand, within A4249_RS00045at 9.056 kb on + strand, within A4249_RS00045at 9.057 kb on - strand, within A4249_RS00045at 9.057 kb on - strand, within A4249_RS00045at 9.057 kb on - strand, within A4249_RS00045at 9.057 kb on - strand, within A4249_RS00045at 9.057 kb on - strand, within A4249_RS00045at 9.127 kb on + strandat 9.127 kb on + strandat 9.211 kb on + strandat 9.211 kb on + strandat 9.446 kb on + strand, within A4249_RS00050at 9.446 kb on + strand, within A4249_RS00050at 9.794 kb on + strandat 9.794 kb on + strandat 9.795 kb on - strandat 9.795 kb on - strandat 9.863 kb on + strand, within A4249_RS00055at 9.899 kb on + strand, within A4249_RS00055at 9.899 kb on + strand, within A4249_RS00055at 9.899 kb on + strand, within A4249_RS00055at 9.899 kb on + strand, within A4249_RS00055at 9.900 kb on - strand, within A4249_RS00055at 9.900 kb on - strand, within A4249_RS00055at 9.900 kb on - strand, within A4249_RS00055at 9.900 kb on - strand, within A4249_RS00055at 9.900 kb on - strand, within A4249_RS00055at 9.900 kb on - strand, within A4249_RS00055at 9.992 kb on + strand, within A4249_RS00055

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine 0.74 mM (C)
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7,970 + A4249_RS00040 0.20 +0.6
7,970 + A4249_RS00040 0.20 -0.2
7,970 + A4249_RS00040 0.20 -1.0
7,970 + A4249_RS00040 0.20 +0.1
7,970 + A4249_RS00040 0.20 -0.6
7,971 - A4249_RS00040 0.20 -1.4
8,050 + A4249_RS00040 0.29 -0.4
8,050 + A4249_RS00040 0.29 +1.0
8,051 - A4249_RS00040 0.29 -0.2
8,051 - A4249_RS00040 0.29 +0.2
8,083 + A4249_RS00040 0.33 -0.5
8,084 - A4249_RS00040 0.33 +0.9
8,084 - A4249_RS00040 0.33 -0.7
8,084 - A4249_RS00040 0.33 +0.4
8,191 + A4249_RS00040 0.46 -0.4
8,191 + A4249_RS00040 0.46 -0.2
8,191 + A4249_RS00040 0.46 +0.0
8,191 + A4249_RS00040 0.46 -0.4
8,191 + A4249_RS00040 0.46 +0.4
8,191 + A4249_RS00040 0.46 -0.4
8,192 - A4249_RS00040 0.46 +0.6
8,192 - A4249_RS00040 0.46 -0.2
8,192 - A4249_RS00040 0.46 +0.6
8,192 - A4249_RS00040 0.46 +1.6
8,192 - A4249_RS00040 0.46 +1.6
8,192 - A4249_RS00040 0.46 -0.1
8,192 - A4249_RS00040 0.46 -0.4
8,192 - A4249_RS00040 0.46 +0.1
8,192 - A4249_RS00040 0.46 +0.6
8,192 - A4249_RS00040 0.46 -0.6
8,263 + A4249_RS00040 0.54 +0.2
8,263 + A4249_RS00040 0.54 -1.2
8,263 + A4249_RS00040 0.54 +0.2
8,264 - A4249_RS00040 0.54 +0.6
8,287 + A4249_RS00040 0.57 +0.5
8,287 + A4249_RS00040 0.57 -0.7
8,288 - A4249_RS00040 0.57 -0.4
8,288 - A4249_RS00040 0.57 +0.5
8,288 - A4249_RS00040 0.57 -0.4
8,288 - A4249_RS00040 0.57 +1.0
8,288 - A4249_RS00040 0.57 +1.2
8,288 - A4249_RS00040 0.57 +0.5
8,288 - A4249_RS00040 0.57 -0.4
8,288 - A4249_RS00040 0.57 +0.4
8,315 - A4249_RS00040 0.60 -0.4
8,315 - A4249_RS00040 0.60 -0.6
8,344 + A4249_RS00040 0.63 +0.0
8,345 - A4249_RS00040 0.64 -0.4
8,368 + A4249_RS00040 0.66 +0.0
8,403 - A4249_RS00040 0.70 -0.2
8,403 - A4249_RS00040 0.70 -0.3
8,403 - A4249_RS00040 0.70 -0.7
8,403 - A4249_RS00040 0.70 -0.2
8,542 + A4249_RS00040 0.87 +0.0
8,543 - A4249_RS00040 0.87 -1.0
8,659 + -1.2
8,659 + -0.0
8,681 + -0.5
8,682 - +0.1
8,682 - +0.0
8,682 - -0.2
8,686 + +0.2
8,686 + +0.5
8,686 + -0.6
8,686 + +0.4
8,687 - +0.7
8,687 - +0.4
8,687 - +0.3
8,840 + A4249_RS00045 0.27 -0.8
8,840 + A4249_RS00045 0.27 -0.1
8,841 - A4249_RS00045 0.27 +0.3
8,841 - A4249_RS00045 0.27 +0.1
8,841 - A4249_RS00045 0.27 +0.1
9,036 - A4249_RS00045 0.77 +0.1
9,036 - A4249_RS00045 0.77 +0.4
9,056 + A4249_RS00045 0.83 -1.0
9,057 - A4249_RS00045 0.83 +0.2
9,057 - A4249_RS00045 0.83 -0.2
9,057 - A4249_RS00045 0.83 +0.6
9,057 - A4249_RS00045 0.83 -1.1
9,057 - A4249_RS00045 0.83 -1.8
9,127 + +0.1
9,127 + -0.6
9,211 + -0.2
9,211 + -0.1
9,446 + A4249_RS00050 0.38 +0.4
9,446 + A4249_RS00050 0.38 -1.2
9,794 + -0.1
9,794 + +0.4
9,795 - +0.1
9,795 - -0.2
9,863 + A4249_RS00055 0.11 -0.1
9,899 + A4249_RS00055 0.16 -0.1
9,899 + A4249_RS00055 0.16 +0.5
9,899 + A4249_RS00055 0.16 -0.0
9,899 + A4249_RS00055 0.16 +0.2
9,900 - A4249_RS00055 0.16 +1.6
9,900 - A4249_RS00055 0.16 +0.4
9,900 - A4249_RS00055 0.16 -0.2
9,900 - A4249_RS00055 0.16 +0.1
9,900 - A4249_RS00055 0.16 +0.6
9,900 - A4249_RS00055 0.16 -0.6
9,992 + A4249_RS00055 0.31 -0.1

Or see this region's nucleotide sequence