Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_21545 and CA264_21550 are separated by 219 nucleotides CA264_21550 and CA264_21555 are separated by 85 nucleotides CA264_21555 and CA264_21560 are separated by 8 nucleotides
CA264_21545: CA264_21545 - AraC family transcriptional regulator, at 177,635 to 177,823
_21545
CA264_21550: CA264_21550 - hypothetical protein, at 178,043 to 178,714
_21550
CA264_21555: CA264_21555 - phosphoribosylpyrophosphate synthetase, at 178,800 to 179,114
_21555
CA264_21560: CA264_21560 - copper-translocating P-type ATPase, at 179,123 to 181,267
_21560
Position (kb) 178
179
180 Strain fitness (log2 ratio) -1
0
1
2 at 177.802 kb on + strand, within CA264_21545 at 177.803 kb on - strand, within CA264_21545 at 177.805 kb on + strand at 177.819 kb on - strand at 177.846 kb on + strand at 177.846 kb on + strand at 177.847 kb on - strand at 177.847 kb on - strand at 177.848 kb on + strand at 177.848 kb on + strand at 177.849 kb on - strand at 177.849 kb on - strand at 177.895 kb on - strand at 177.899 kb on + strand at 177.899 kb on + strand at 177.928 kb on + strand at 177.928 kb on + strand at 177.979 kb on - strand at 177.979 kb on - strand at 177.983 kb on - strand at 177.987 kb on - strand at 178.024 kb on + strand at 178.025 kb on - strand at 178.038 kb on + strand at 178.384 kb on - strand, within CA264_21550 at 178.393 kb on - strand, within CA264_21550 at 178.393 kb on - strand, within CA264_21550 at 178.395 kb on + strand, within CA264_21550 at 178.412 kb on + strand, within CA264_21550 at 178.415 kb on + strand, within CA264_21550 at 178.415 kb on + strand, within CA264_21550 at 178.415 kb on + strand, within CA264_21550 at 178.415 kb on + strand, within CA264_21550 at 178.415 kb on + strand, within CA264_21550 at 178.415 kb on + strand, within CA264_21550 at 178.416 kb on - strand, within CA264_21550 at 178.416 kb on - strand, within CA264_21550 at 178.416 kb on - strand, within CA264_21550 at 178.416 kb on - strand, within CA264_21550 at 178.473 kb on + strand, within CA264_21550 at 178.493 kb on + strand, within CA264_21550 at 178.616 kb on + strand, within CA264_21550 at 178.617 kb on - strand, within CA264_21550 at 178.656 kb on + strand at 178.660 kb on + strand at 178.660 kb on + strand at 178.661 kb on - strand at 178.661 kb on - strand at 178.662 kb on + strand at 178.662 kb on + strand at 178.689 kb on - strand at 178.718 kb on - strand at 178.772 kb on - strand at 178.772 kb on - strand at 178.775 kb on + strand at 178.778 kb on - strand at 178.816 kb on - strand at 178.875 kb on - strand, within CA264_21555 at 178.875 kb on - strand, within CA264_21555 at 178.921 kb on + strand, within CA264_21555 at 178.951 kb on + strand, within CA264_21555 at 178.951 kb on + strand, within CA264_21555 at 178.986 kb on - strand, within CA264_21555 at 179.024 kb on - strand, within CA264_21555 at 179.055 kb on + strand, within CA264_21555 at 179.055 kb on + strand, within CA264_21555 at 179.056 kb on - strand, within CA264_21555 at 179.056 kb on - strand, within CA264_21555 at 179.112 kb on + strand at 179.112 kb on + strand at 179.123 kb on - strand at 179.286 kb on + strand at 179.286 kb on + strand at 179.353 kb on + strand, within CA264_21560 at 179.353 kb on + strand, within CA264_21560 at 179.423 kb on - strand, within CA264_21560 at 179.443 kb on + strand, within CA264_21560 at 179.489 kb on + strand, within CA264_21560 at 179.496 kb on - strand, within CA264_21560 at 179.536 kb on + strand, within CA264_21560 at 179.591 kb on + strand, within CA264_21560 at 179.591 kb on + strand, within CA264_21560 at 179.591 kb on + strand, within CA264_21560 at 179.591 kb on + strand, within CA264_21560 at 179.591 kb on + strand, within CA264_21560 at 179.591 kb on + strand, within CA264_21560 at 179.591 kb on + strand, within CA264_21560 at 179.591 kb on + strand, within CA264_21560 at 179.592 kb on - strand, within CA264_21560 at 179.595 kb on + strand, within CA264_21560 at 179.595 kb on + strand, within CA264_21560 at 179.595 kb on + strand, within CA264_21560 at 179.595 kb on + strand, within CA264_21560 at 179.595 kb on + strand, within CA264_21560 at 179.595 kb on + strand, within CA264_21560 at 179.596 kb on - strand, within CA264_21560 at 179.596 kb on - strand, within CA264_21560 at 179.596 kb on - strand, within CA264_21560 at 179.596 kb on - strand, within CA264_21560 at 179.704 kb on - strand, within CA264_21560 at 179.767 kb on + strand, within CA264_21560 at 179.768 kb on - strand, within CA264_21560 at 179.768 kb on - strand, within CA264_21560 at 179.768 kb on - strand, within CA264_21560 at 179.785 kb on + strand, within CA264_21560 at 179.879 kb on - strand, within CA264_21560 at 179.882 kb on + strand, within CA264_21560 at 179.883 kb on - strand, within CA264_21560 at 179.883 kb on - strand, within CA264_21560 at 179.962 kb on - strand, within CA264_21560 at 180.014 kb on + strand, within CA264_21560 at 180.031 kb on + strand, within CA264_21560 at 180.032 kb on - strand, within CA264_21560
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 177,802 + CA264_21545 0.88 +0.9 177,803 - CA264_21545 0.89 -0.8 177,805 + -0.2 177,819 - +0.1 177,846 + -0.2 177,846 + -0.8 177,847 - +1.1 177,847 - +0.1 177,848 + -0.4 177,848 + -1.5 177,849 - -0.7 177,849 - +1.1 177,895 - -1.0 177,899 + -0.8 177,899 + -1.1 177,928 + -0.6 177,928 + +0.2 177,979 - +0.0 177,979 - -0.5 177,983 - -0.2 177,987 - -0.1 178,024 + -1.7 178,025 - +0.7 178,038 + -0.9 178,384 - CA264_21550 0.51 +1.3 178,393 - CA264_21550 0.52 -1.7 178,393 - CA264_21550 0.52 +0.3 178,395 + CA264_21550 0.52 +0.5 178,412 + CA264_21550 0.55 -0.0 178,415 + CA264_21550 0.55 -0.5 178,415 + CA264_21550 0.55 +0.6 178,415 + CA264_21550 0.55 +0.1 178,415 + CA264_21550 0.55 -0.6 178,415 + CA264_21550 0.55 -1.4 178,415 + CA264_21550 0.55 -0.6 178,416 - CA264_21550 0.56 +0.2 178,416 - CA264_21550 0.56 -0.5 178,416 - CA264_21550 0.56 -0.2 178,416 - CA264_21550 0.56 -0.1 178,473 + CA264_21550 0.64 +0.0 178,493 + CA264_21550 0.67 -0.5 178,616 + CA264_21550 0.85 +0.3 178,617 - CA264_21550 0.85 +0.5 178,656 + -0.2 178,660 + -0.4 178,660 + -0.4 178,661 - -1.1 178,661 - -0.3 178,662 + -0.5 178,662 + -1.3 178,689 - +2.1 178,718 - +0.1 178,772 - +0.8 178,772 - +0.3 178,775 + -0.3 178,778 - +0.1 178,816 - +1.1 178,875 - CA264_21555 0.24 -0.2 178,875 - CA264_21555 0.24 -0.0 178,921 + CA264_21555 0.38 +0.6 178,951 + CA264_21555 0.48 +1.2 178,951 + CA264_21555 0.48 +0.5 178,986 - CA264_21555 0.59 -0.4 179,024 - CA264_21555 0.71 +0.6 179,055 + CA264_21555 0.81 +1.6 179,055 + CA264_21555 0.81 -0.1 179,056 - CA264_21555 0.81 -0.4 179,056 - CA264_21555 0.81 -0.9 179,112 + -0.2 179,112 + +0.1 179,123 - -0.5 179,286 + -0.9 179,286 + -1.5 179,353 + CA264_21560 0.11 -0.4 179,353 + CA264_21560 0.11 -1.5 179,423 - CA264_21560 0.14 -0.5 179,443 + CA264_21560 0.15 +0.1 179,489 + CA264_21560 0.17 -0.2 179,496 - CA264_21560 0.17 -0.3 179,536 + CA264_21560 0.19 -0.3 179,591 + CA264_21560 0.22 -0.5 179,591 + CA264_21560 0.22 +1.2 179,591 + CA264_21560 0.22 +0.4 179,591 + CA264_21560 0.22 +0.6 179,591 + CA264_21560 0.22 -0.5 179,591 + CA264_21560 0.22 -0.6 179,591 + CA264_21560 0.22 +0.3 179,591 + CA264_21560 0.22 -0.2 179,592 - CA264_21560 0.22 +2.6 179,595 + CA264_21560 0.22 -0.3 179,595 + CA264_21560 0.22 -0.3 179,595 + CA264_21560 0.22 -0.5 179,595 + CA264_21560 0.22 -0.0 179,595 + CA264_21560 0.22 -0.7 179,595 + CA264_21560 0.22 -0.7 179,596 - CA264_21560 0.22 -0.1 179,596 - CA264_21560 0.22 -0.9 179,596 - CA264_21560 0.22 -0.2 179,596 - CA264_21560 0.22 +2.1 179,704 - CA264_21560 0.27 +0.2 179,767 + CA264_21560 0.30 -1.0 179,768 - CA264_21560 0.30 +1.5 179,768 - CA264_21560 0.30 -0.7 179,768 - CA264_21560 0.30 +0.6 179,785 + CA264_21560 0.31 -0.4 179,879 - CA264_21560 0.35 -0.9 179,882 + CA264_21560 0.35 -0.4 179,883 - CA264_21560 0.35 +1.1 179,883 - CA264_21560 0.35 -0.1 179,962 - CA264_21560 0.39 -1.3 180,014 + CA264_21560 0.42 -1.5 180,031 + CA264_21560 0.42 -0.3 180,032 - CA264_21560 0.42 +0.6
Or see this region's nucleotide sequence