Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_21360 and CA264_21365 are separated by 312 nucleotides CA264_21365 and CA264_21370 are separated by 330 nucleotides
CA264_21360: CA264_21360 - trehalase-like protein, at 135,866 to 137,182
_21360
CA264_21365: CA264_21365 - hypothetical protein, at 137,495 to 137,875
_21365
CA264_21370: CA264_21370 - hypothetical protein, at 138,206 to 139,042
_21370
Position (kb) 137
138 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 136.558 kb on + strand, within CA264_21360 at 136.565 kb on + strand, within CA264_21360 at 136.566 kb on - strand, within CA264_21360 at 136.631 kb on + strand, within CA264_21360 at 136.679 kb on + strand, within CA264_21360 at 136.680 kb on - strand, within CA264_21360 at 136.680 kb on - strand, within CA264_21360 at 136.703 kb on + strand, within CA264_21360 at 136.704 kb on - strand, within CA264_21360 at 136.704 kb on - strand, within CA264_21360 at 136.704 kb on - strand, within CA264_21360 at 136.710 kb on + strand, within CA264_21360 at 136.711 kb on - strand, within CA264_21360 at 136.768 kb on + strand, within CA264_21360 at 136.903 kb on + strand, within CA264_21360 at 136.907 kb on + strand, within CA264_21360 at 136.937 kb on + strand, within CA264_21360 at 136.938 kb on - strand, within CA264_21360 at 137.011 kb on + strand, within CA264_21360 at 137.011 kb on + strand, within CA264_21360 at 137.048 kb on + strand, within CA264_21360 at 137.048 kb on + strand, within CA264_21360 at 137.048 kb on + strand, within CA264_21360 at 137.049 kb on - strand, within CA264_21360 at 137.049 kb on - strand, within CA264_21360 at 137.049 kb on - strand, within CA264_21360 at 137.049 kb on - strand, within CA264_21360 at 137.049 kb on - strand, within CA264_21360 at 137.081 kb on + strand at 137.177 kb on - strand at 137.180 kb on + strand at 137.181 kb on - strand at 137.207 kb on - strand at 137.222 kb on + strand at 137.223 kb on - strand at 137.264 kb on + strand at 137.264 kb on + strand at 137.279 kb on + strand at 137.302 kb on + strand at 137.303 kb on - strand at 137.306 kb on + strand at 137.307 kb on - strand at 137.307 kb on - strand at 137.311 kb on + strand at 137.311 kb on + strand at 137.314 kb on + strand at 137.333 kb on - strand at 137.333 kb on - strand at 137.371 kb on + strand at 137.372 kb on - strand at 137.381 kb on + strand at 137.382 kb on - strand at 137.382 kb on - strand at 137.411 kb on + strand at 137.419 kb on + strand at 137.428 kb on + strand at 137.428 kb on + strand at 137.429 kb on - strand at 137.431 kb on - strand at 137.431 kb on - strand at 137.432 kb on + strand at 137.432 kb on + strand at 137.433 kb on - strand at 137.433 kb on - strand at 137.453 kb on + strand at 137.453 kb on + strand at 137.457 kb on + strand at 137.458 kb on - strand at 137.478 kb on + strand at 137.478 kb on + strand at 137.479 kb on - strand at 137.479 kb on - strand at 137.480 kb on + strand at 137.481 kb on - strand at 137.491 kb on + strand at 137.491 kb on + strand at 137.491 kb on + strand at 137.492 kb on - strand at 137.563 kb on - strand, within CA264_21365 at 137.563 kb on - strand, within CA264_21365 at 137.581 kb on - strand, within CA264_21365 at 137.594 kb on + strand, within CA264_21365 at 137.594 kb on + strand, within CA264_21365 at 137.595 kb on - strand, within CA264_21365 at 137.698 kb on + strand, within CA264_21365 at 137.741 kb on + strand, within CA264_21365 at 137.744 kb on - strand, within CA264_21365 at 137.744 kb on - strand, within CA264_21365 at 137.801 kb on - strand, within CA264_21365 at 137.801 kb on - strand, within CA264_21365 at 137.801 kb on - strand, within CA264_21365 at 137.866 kb on + strand at 137.866 kb on + strand at 137.867 kb on - strand at 137.886 kb on + strand at 137.887 kb on - strand at 137.887 kb on - strand at 137.901 kb on + strand at 137.902 kb on - strand at 137.908 kb on - strand at 137.915 kb on - strand at 137.932 kb on - strand at 137.932 kb on - strand at 137.958 kb on + strand at 137.983 kb on - strand at 137.983 kb on - strand at 138.055 kb on + strand at 138.055 kb on + strand at 138.057 kb on + strand at 138.132 kb on + strand at 138.133 kb on - strand at 138.200 kb on + strand at 138.201 kb on - strand at 138.201 kb on - strand at 138.201 kb on - strand at 138.220 kb on + strand at 138.237 kb on - strand at 138.268 kb on - strand at 138.273 kb on + strand at 138.281 kb on - strand at 138.281 kb on - strand at 138.311 kb on - strand, within CA264_21370 at 138.349 kb on + strand, within CA264_21370 at 138.350 kb on - strand, within CA264_21370 at 138.351 kb on + strand, within CA264_21370 at 138.355 kb on + strand, within CA264_21370 at 138.356 kb on - strand, within CA264_21370 at 138.396 kb on - strand, within CA264_21370 at 138.410 kb on + strand, within CA264_21370 at 138.410 kb on + strand, within CA264_21370 at 138.411 kb on - strand, within CA264_21370 at 138.411 kb on - strand, within CA264_21370 at 138.411 kb on - strand, within CA264_21370 at 138.411 kb on - strand, within CA264_21370 at 138.412 kb on + strand, within CA264_21370 at 138.505 kb on - strand, within CA264_21370 at 138.602 kb on + strand, within CA264_21370 at 138.604 kb on + strand, within CA264_21370 at 138.604 kb on + strand, within CA264_21370 at 138.607 kb on + strand, within CA264_21370 at 138.644 kb on + strand, within CA264_21370 at 138.698 kb on + strand, within CA264_21370 at 138.704 kb on - strand, within CA264_21370 at 138.716 kb on + strand, within CA264_21370 at 138.757 kb on - strand, within CA264_21370 at 138.815 kb on + strand, within CA264_21370 at 138.815 kb on + strand, within CA264_21370 at 138.816 kb on - strand, within CA264_21370
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 136,558 + CA264_21360 0.53 -1.1 136,565 + CA264_21360 0.53 -0.5 136,566 - CA264_21360 0.53 -0.5 136,631 + CA264_21360 0.58 -0.6 136,679 + CA264_21360 0.62 -0.2 136,680 - CA264_21360 0.62 +1.5 136,680 - CA264_21360 0.62 -0.5 136,703 + CA264_21360 0.64 +0.3 136,704 - CA264_21360 0.64 +0.7 136,704 - CA264_21360 0.64 +1.9 136,704 - CA264_21360 0.64 -0.3 136,710 + CA264_21360 0.64 -0.2 136,711 - CA264_21360 0.64 -0.4 136,768 + CA264_21360 0.68 -0.5 136,903 + CA264_21360 0.79 +0.4 136,907 + CA264_21360 0.79 +0.2 136,937 + CA264_21360 0.81 +0.2 136,938 - CA264_21360 0.81 -0.6 137,011 + CA264_21360 0.87 +0.7 137,011 + CA264_21360 0.87 +0.5 137,048 + CA264_21360 0.90 +1.8 137,048 + CA264_21360 0.90 -0.8 137,048 + CA264_21360 0.90 -0.9 137,049 - CA264_21360 0.90 +0.0 137,049 - CA264_21360 0.90 -1.2 137,049 - CA264_21360 0.90 -0.0 137,049 - CA264_21360 0.90 -1.4 137,049 - CA264_21360 0.90 -0.9 137,081 + -1.1 137,177 - +0.1 137,180 + -0.3 137,181 - -0.7 137,207 - +1.1 137,222 + -1.6 137,223 - +0.6 137,264 + +0.3 137,264 + -0.9 137,279 + +0.1 137,302 + -0.1 137,303 - -1.5 137,306 + +0.5 137,307 - +0.0 137,307 - +0.5 137,311 + -0.4 137,311 + +0.2 137,314 + -0.5 137,333 - -0.4 137,333 - +0.1 137,371 + -0.2 137,372 - -0.5 137,381 + -0.2 137,382 - -0.6 137,382 - -0.7 137,411 + -0.2 137,419 + -0.4 137,428 + -0.1 137,428 + -0.6 137,429 - -0.3 137,431 - -0.1 137,431 - -0.2 137,432 + -0.4 137,432 + +0.3 137,433 - -0.2 137,433 - +0.3 137,453 + -1.7 137,453 + +0.1 137,457 + +0.1 137,458 - -0.3 137,478 + -0.5 137,478 + -2.8 137,479 - -0.5 137,479 - +0.1 137,480 + +1.4 137,481 - -0.1 137,491 + +2.6 137,491 + +0.1 137,491 + +1.1 137,492 - -0.3 137,563 - CA264_21365 0.18 -1.4 137,563 - CA264_21365 0.18 +0.0 137,581 - CA264_21365 0.23 -0.7 137,594 + CA264_21365 0.26 -0.2 137,594 + CA264_21365 0.26 +1.1 137,595 - CA264_21365 0.26 -0.3 137,698 + CA264_21365 0.53 -0.3 137,741 + CA264_21365 0.65 +0.4 137,744 - CA264_21365 0.65 +2.1 137,744 - CA264_21365 0.65 -2.6 137,801 - CA264_21365 0.80 +2.1 137,801 - CA264_21365 0.80 +0.3 137,801 - CA264_21365 0.80 -0.6 137,866 + -1.3 137,866 + +0.3 137,867 - +0.4 137,886 + -0.9 137,887 - -1.1 137,887 - -0.5 137,901 + +0.8 137,902 - -0.6 137,908 - -1.2 137,915 - +0.2 137,932 - +0.2 137,932 - -0.7 137,958 + +0.6 137,983 - -0.5 137,983 - +0.1 138,055 + +0.3 138,055 + -0.3 138,057 + -2.3 138,132 + -0.9 138,133 - +0.4 138,200 + -0.5 138,201 - -0.9 138,201 - -0.2 138,201 - -0.3 138,220 + +0.1 138,237 - -0.3 138,268 - +1.2 138,273 + -0.5 138,281 - -1.1 138,281 - -0.9 138,311 - CA264_21370 0.13 -0.8 138,349 + CA264_21370 0.17 +0.1 138,350 - CA264_21370 0.17 +1.1 138,351 + CA264_21370 0.17 +0.1 138,355 + CA264_21370 0.18 -1.3 138,356 - CA264_21370 0.18 -0.3 138,396 - CA264_21370 0.23 +1.1 138,410 + CA264_21370 0.24 +0.7 138,410 + CA264_21370 0.24 -0.5 138,411 - CA264_21370 0.24 -0.4 138,411 - CA264_21370 0.24 -0.1 138,411 - CA264_21370 0.24 -0.5 138,411 - CA264_21370 0.24 +0.5 138,412 + CA264_21370 0.25 -2.4 138,505 - CA264_21370 0.36 -0.9 138,602 + CA264_21370 0.47 -0.6 138,604 + CA264_21370 0.48 -0.5 138,604 + CA264_21370 0.48 +0.3 138,607 + CA264_21370 0.48 +0.6 138,644 + CA264_21370 0.52 -0.2 138,698 + CA264_21370 0.59 -0.2 138,704 - CA264_21370 0.59 +0.1 138,716 + CA264_21370 0.61 -0.9 138,757 - CA264_21370 0.66 +0.3 138,815 + CA264_21370 0.73 -0.2 138,815 + CA264_21370 0.73 +0.0 138,816 - CA264_21370 0.73 -0.3
Or see this region's nucleotide sequence