Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_03695

Experiment: marine broth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_03690 and CA264_03695 are separated by 125 nucleotidesCA264_03695 and CA264_03700 are separated by 139 nucleotides CA264_03690: CA264_03690 - efflux transporter periplasmic adaptor subunit, at 864,303 to 865,547 _03690 CA264_03695: CA264_03695 - heavy metal translocating P-type ATPase, at 865,673 to 867,700 _03695 CA264_03700: CA264_03700 - hypothetical protein, at 867,840 to 868,796 _03700 Position (kb) 865 866 867 868Strain fitness (log2 ratio) -2 -1 0 1 2 3at 864.682 kb on + strand, within CA264_03690at 864.682 kb on + strand, within CA264_03690at 864.683 kb on - strand, within CA264_03690at 864.683 kb on - strand, within CA264_03690at 864.687 kb on + strand, within CA264_03690at 864.688 kb on - strand, within CA264_03690at 864.727 kb on - strand, within CA264_03690at 864.941 kb on + strand, within CA264_03690at 864.942 kb on - strand, within CA264_03690at 864.997 kb on - strand, within CA264_03690at 865.116 kb on + strand, within CA264_03690at 865.129 kb on + strand, within CA264_03690at 865.130 kb on - strand, within CA264_03690at 865.212 kb on - strand, within CA264_03690at 865.224 kb on + strand, within CA264_03690at 865.224 kb on + strand, within CA264_03690at 865.224 kb on + strand, within CA264_03690at 865.224 kb on + strand, within CA264_03690at 865.242 kb on + strand, within CA264_03690at 865.243 kb on - strand, within CA264_03690at 865.308 kb on + strand, within CA264_03690at 865.409 kb on - strand, within CA264_03690at 865.409 kb on - strand, within CA264_03690at 865.497 kb on + strandat 865.497 kb on + strandat 865.497 kb on + strandat 865.498 kb on - strandat 865.500 kb on + strandat 865.501 kb on - strandat 865.553 kb on + strandat 865.622 kb on + strandat 865.622 kb on + strandat 865.672 kb on + strandat 865.703 kb on - strandat 865.704 kb on + strandat 865.859 kb on + strandat 865.940 kb on + strand, within CA264_03695at 865.959 kb on - strand, within CA264_03695at 866.075 kb on + strand, within CA264_03695at 866.117 kb on + strand, within CA264_03695at 866.117 kb on + strand, within CA264_03695at 866.118 kb on - strand, within CA264_03695at 866.206 kb on - strand, within CA264_03695at 866.363 kb on - strand, within CA264_03695at 866.363 kb on - strand, within CA264_03695at 866.598 kb on - strand, within CA264_03695at 866.659 kb on - strand, within CA264_03695at 866.747 kb on - strand, within CA264_03695at 867.062 kb on + strand, within CA264_03695at 867.062 kb on + strand, within CA264_03695at 867.062 kb on + strand, within CA264_03695at 867.063 kb on - strand, within CA264_03695at 867.065 kb on - strand, within CA264_03695at 867.134 kb on + strand, within CA264_03695at 867.135 kb on - strand, within CA264_03695at 867.135 kb on - strand, within CA264_03695at 867.143 kb on + strand, within CA264_03695at 867.144 kb on - strand, within CA264_03695at 867.144 kb on - strand, within CA264_03695at 867.247 kb on + strand, within CA264_03695at 867.247 kb on + strand, within CA264_03695at 867.247 kb on + strand, within CA264_03695at 867.248 kb on - strand, within CA264_03695at 867.248 kb on - strand, within CA264_03695at 867.264 kb on + strand, within CA264_03695at 867.265 kb on + strand, within CA264_03695at 867.326 kb on - strand, within CA264_03695at 867.516 kb on + strandat 867.516 kb on + strandat 867.582 kb on + strandat 867.582 kb on + strandat 867.587 kb on - strandat 867.639 kb on + strandat 867.639 kb on + strandat 867.748 kb on + strandat 867.806 kb on + strandat 867.806 kb on + strandat 867.834 kb on + strandat 867.835 kb on - strandat 867.837 kb on - strandat 867.842 kb on - strandat 867.842 kb on - strandat 867.886 kb on - strandat 867.888 kb on - strandat 867.975 kb on + strand, within CA264_03700at 867.975 kb on + strand, within CA264_03700at 867.976 kb on - strand, within CA264_03700at 867.982 kb on - strand, within CA264_03700at 868.005 kb on + strand, within CA264_03700at 868.053 kb on - strand, within CA264_03700at 868.053 kb on - strand, within CA264_03700at 868.064 kb on + strand, within CA264_03700at 868.064 kb on + strand, within CA264_03700at 868.065 kb on - strand, within CA264_03700at 868.071 kb on + strand, within CA264_03700at 868.086 kb on + strand, within CA264_03700at 868.086 kb on + strand, within CA264_03700at 868.087 kb on - strand, within CA264_03700at 868.150 kb on + strand, within CA264_03700at 868.161 kb on + strand, within CA264_03700at 868.181 kb on + strand, within CA264_03700at 868.182 kb on - strand, within CA264_03700at 868.331 kb on - strand, within CA264_03700at 868.432 kb on + strand, within CA264_03700at 868.433 kb on - strand, within CA264_03700at 868.452 kb on + strand, within CA264_03700at 868.470 kb on - strand, within CA264_03700at 868.532 kb on - strand, within CA264_03700at 868.579 kb on - strand, within CA264_03700

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Per-strain Table

Position Strand Gene LocusTag Fraction marine broth
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864,682 + CA264_03690 0.30 +0.5
864,682 + CA264_03690 0.30 -0.0
864,683 - CA264_03690 0.31 +0.6
864,683 - CA264_03690 0.31 +0.6
864,687 + CA264_03690 0.31 +0.4
864,688 - CA264_03690 0.31 -0.7
864,727 - CA264_03690 0.34 +0.0
864,941 + CA264_03690 0.51 -0.5
864,942 - CA264_03690 0.51 +0.6
864,997 - CA264_03690 0.56 +0.3
865,116 + CA264_03690 0.65 -1.2
865,129 + CA264_03690 0.66 -0.8
865,130 - CA264_03690 0.66 -0.4
865,212 - CA264_03690 0.73 -0.1
865,224 + CA264_03690 0.74 -0.7
865,224 + CA264_03690 0.74 -0.0
865,224 + CA264_03690 0.74 -0.7
865,224 + CA264_03690 0.74 -0.5
865,242 + CA264_03690 0.75 -0.3
865,243 - CA264_03690 0.76 +0.1
865,308 + CA264_03690 0.81 -0.8
865,409 - CA264_03690 0.89 +1.2
865,409 - CA264_03690 0.89 -0.1
865,497 + -0.6
865,497 + -0.6
865,497 + -0.3
865,498 - -0.2
865,500 + -0.4
865,501 - +0.2
865,553 + -0.7
865,622 + -0.5
865,622 + +0.8
865,672 + +0.3
865,703 - -0.2
865,704 + -0.2
865,859 + +0.2
865,940 + CA264_03695 0.13 -1.7
865,959 - CA264_03695 0.14 -0.4
866,075 + CA264_03695 0.20 +0.3
866,117 + CA264_03695 0.22 +0.3
866,117 + CA264_03695 0.22 -0.4
866,118 - CA264_03695 0.22 -0.1
866,206 - CA264_03695 0.26 -0.4
866,363 - CA264_03695 0.34 -0.1
866,363 - CA264_03695 0.34 -0.3
866,598 - CA264_03695 0.46 +1.4
866,659 - CA264_03695 0.49 -0.3
866,747 - CA264_03695 0.53 +0.4
867,062 + CA264_03695 0.68 +0.8
867,062 + CA264_03695 0.68 -1.0
867,062 + CA264_03695 0.68 -0.2
867,063 - CA264_03695 0.69 -0.2
867,065 - CA264_03695 0.69 +0.0
867,134 + CA264_03695 0.72 -0.9
867,135 - CA264_03695 0.72 +0.3
867,135 - CA264_03695 0.72 -0.2
867,143 + CA264_03695 0.72 -0.6
867,144 - CA264_03695 0.73 +0.4
867,144 - CA264_03695 0.73 -0.6
867,247 + CA264_03695 0.78 -1.2
867,247 + CA264_03695 0.78 -0.0
867,247 + CA264_03695 0.78 +0.0
867,248 - CA264_03695 0.78 -0.0
867,248 - CA264_03695 0.78 -0.6
867,264 + CA264_03695 0.78 +0.2
867,265 + CA264_03695 0.79 +3.1
867,326 - CA264_03695 0.82 -0.5
867,516 + +0.4
867,516 + -0.6
867,582 + +1.0
867,582 + +0.8
867,587 - -0.5
867,639 + +0.0
867,639 + +0.1
867,748 + -0.6
867,806 + +0.1
867,806 + -0.2
867,834 + -0.3
867,835 - -0.3
867,837 - -0.4
867,842 - -1.0
867,842 - -0.5
867,886 - -0.2
867,888 - +0.1
867,975 + CA264_03700 0.14 -0.7
867,975 + CA264_03700 0.14 +0.8
867,976 - CA264_03700 0.14 -0.6
867,982 - CA264_03700 0.15 +0.4
868,005 + CA264_03700 0.17 -0.2
868,053 - CA264_03700 0.22 -1.5
868,053 - CA264_03700 0.22 -0.9
868,064 + CA264_03700 0.23 -0.0
868,064 + CA264_03700 0.23 -2.0
868,065 - CA264_03700 0.24 +0.2
868,071 + CA264_03700 0.24 -0.9
868,086 + CA264_03700 0.26 -0.4
868,086 + CA264_03700 0.26 -0.2
868,087 - CA264_03700 0.26 -0.2
868,150 + CA264_03700 0.32 +0.4
868,161 + CA264_03700 0.34 +0.3
868,181 + CA264_03700 0.36 +0.8
868,182 - CA264_03700 0.36 +1.1
868,331 - CA264_03700 0.51 -1.9
868,432 + CA264_03700 0.62 +1.4
868,433 - CA264_03700 0.62 +0.3
868,452 + CA264_03700 0.64 -0.8
868,470 - CA264_03700 0.66 -0.2
868,532 - CA264_03700 0.72 -0.3
868,579 - CA264_03700 0.77 -0.2

Or see this region's nucleotide sequence