Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_03435 and CA264_03440 are separated by 246 nucleotides CA264_03440 and CA264_03445 are separated by 341 nucleotides
CA264_03435: CA264_03435 - hypothetical protein, at 800,647 to 801,348
_03435
CA264_03440: CA264_03440 - DoxX family protein, at 801,595 to 801,993
_03440
CA264_03445: CA264_03445 - anhydro-N-acetylmuramic acid kinase, at 802,335 to 803,534
_03445
Position (kb) 801
802 Strain fitness (log2 ratio) -2
-1
0
1
2 at 800.614 kb on - strand at 800.618 kb on + strand at 800.618 kb on + strand at 800.619 kb on - strand at 800.619 kb on - strand at 800.621 kb on - strand at 800.658 kb on + strand at 800.811 kb on - strand, within CA264_03435 at 800.846 kb on - strand, within CA264_03435 at 800.857 kb on + strand, within CA264_03435 at 800.977 kb on + strand, within CA264_03435 at 801.040 kb on + strand, within CA264_03435 at 801.041 kb on - strand, within CA264_03435 at 801.043 kb on + strand, within CA264_03435 at 801.080 kb on - strand, within CA264_03435 at 801.080 kb on - strand, within CA264_03435 at 801.128 kb on + strand, within CA264_03435 at 801.129 kb on - strand, within CA264_03435 at 801.129 kb on - strand, within CA264_03435 at 801.129 kb on - strand, within CA264_03435 at 801.183 kb on + strand, within CA264_03435 at 801.195 kb on + strand, within CA264_03435 at 801.196 kb on - strand, within CA264_03435 at 801.196 kb on - strand, within CA264_03435 at 801.287 kb on + strand at 801.288 kb on - strand at 801.401 kb on + strand at 801.427 kb on + strand at 801.428 kb on - strand at 801.428 kb on - strand at 801.428 kb on - strand at 801.429 kb on + strand at 801.430 kb on - strand at 801.430 kb on - strand at 801.430 kb on - strand at 801.475 kb on - strand at 801.489 kb on + strand at 801.489 kb on + strand at 801.490 kb on - strand at 801.490 kb on - strand at 801.490 kb on - strand at 801.490 kb on - strand at 801.498 kb on - strand at 801.547 kb on + strand at 801.549 kb on + strand at 801.553 kb on + strand at 801.554 kb on - strand at 801.554 kb on - strand at 801.567 kb on + strand at 801.604 kb on + strand at 801.604 kb on + strand at 801.604 kb on + strand at 801.604 kb on + strand at 801.666 kb on + strand, within CA264_03440 at 801.667 kb on - strand, within CA264_03440 at 801.775 kb on - strand, within CA264_03440 at 801.907 kb on + strand, within CA264_03440 at 801.908 kb on - strand, within CA264_03440 at 801.925 kb on + strand, within CA264_03440 at 801.926 kb on - strand, within CA264_03440 at 801.926 kb on - strand, within CA264_03440 at 801.984 kb on + strand at 802.004 kb on + strand at 802.010 kb on + strand at 802.011 kb on - strand at 802.011 kb on - strand at 802.011 kb on - strand at 802.013 kb on + strand at 802.014 kb on - strand at 802.074 kb on - strand at 802.077 kb on + strand at 802.077 kb on + strand at 802.077 kb on + strand at 802.077 kb on + strand at 802.077 kb on + strand at 802.078 kb on - strand at 802.078 kb on - strand at 802.078 kb on - strand at 802.110 kb on + strand at 802.111 kb on - strand at 802.111 kb on - strand at 802.117 kb on - strand at 802.117 kb on - strand at 802.217 kb on - strand at 802.229 kb on + strand at 802.230 kb on - strand at 802.231 kb on + strand at 802.231 kb on + strand at 802.231 kb on + strand at 802.232 kb on - strand at 802.238 kb on + strand at 802.238 kb on + strand at 802.324 kb on + strand at 802.324 kb on + strand at 802.325 kb on - strand at 802.334 kb on + strand at 802.335 kb on - strand at 802.388 kb on + strand at 802.433 kb on - strand at 802.433 kb on - strand at 802.536 kb on - strand, within CA264_03445 at 802.587 kb on + strand, within CA264_03445 at 802.588 kb on - strand, within CA264_03445 at 802.588 kb on - strand, within CA264_03445 at 802.689 kb on + strand, within CA264_03445 at 802.690 kb on - strand, within CA264_03445 at 802.690 kb on - strand, within CA264_03445 at 802.690 kb on - strand at 802.712 kb on + strand, within CA264_03445 at 802.712 kb on + strand, within CA264_03445 at 802.713 kb on - strand, within CA264_03445 at 802.717 kb on + strand, within CA264_03445 at 802.717 kb on + strand, within CA264_03445 at 802.717 kb on + strand, within CA264_03445 at 802.742 kb on - strand, within CA264_03445 at 802.742 kb on - strand, within CA264_03445 at 802.747 kb on + strand, within CA264_03445 at 802.747 kb on + strand, within CA264_03445 at 802.748 kb on - strand, within CA264_03445 at 802.787 kb on - strand, within CA264_03445 at 802.787 kb on - strand, within CA264_03445 at 802.787 kb on - strand, within CA264_03445 at 802.861 kb on - strand, within CA264_03445 at 802.901 kb on + strand, within CA264_03445 at 802.901 kb on + strand, within CA264_03445 at 802.950 kb on - strand, within CA264_03445 at 802.993 kb on + strand, within CA264_03445
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 800,614 - -0.5 800,618 + -0.3 800,618 + +1.8 800,619 - -2.5 800,619 - +0.5 800,621 - -1.2 800,658 + +0.6 800,811 - CA264_03435 0.23 -0.6 800,846 - CA264_03435 0.28 -0.1 800,857 + CA264_03435 0.30 -0.4 800,977 + CA264_03435 0.47 -0.3 801,040 + CA264_03435 0.56 -0.6 801,041 - CA264_03435 0.56 -1.2 801,043 + CA264_03435 0.56 -0.5 801,080 - CA264_03435 0.62 +0.3 801,080 - CA264_03435 0.62 -1.9 801,128 + CA264_03435 0.69 +0.4 801,129 - CA264_03435 0.69 +0.5 801,129 - CA264_03435 0.69 -1.0 801,129 - CA264_03435 0.69 -1.3 801,183 + CA264_03435 0.76 -0.3 801,195 + CA264_03435 0.78 +0.0 801,196 - CA264_03435 0.78 -0.2 801,196 - CA264_03435 0.78 -0.5 801,287 + -0.6 801,288 - +0.1 801,401 + -1.2 801,427 + +0.9 801,428 - -1.2 801,428 - -0.2 801,428 - -0.5 801,429 + +0.8 801,430 - +0.2 801,430 - -0.4 801,430 - +0.1 801,475 - -0.6 801,489 + +0.1 801,489 + +0.2 801,490 - -1.5 801,490 - -0.6 801,490 - -2.3 801,490 - -0.3 801,498 - -1.1 801,547 + +0.7 801,549 + +0.3 801,553 + +0.8 801,554 - -0.5 801,554 - +0.0 801,567 + +0.3 801,604 + -1.5 801,604 + +0.5 801,604 + -0.5 801,604 + -0.7 801,666 + CA264_03440 0.18 -0.3 801,667 - CA264_03440 0.18 +0.4 801,775 - CA264_03440 0.45 +0.6 801,907 + CA264_03440 0.78 +0.5 801,908 - CA264_03440 0.78 +0.1 801,925 + CA264_03440 0.83 -0.2 801,926 - CA264_03440 0.83 +0.2 801,926 - CA264_03440 0.83 -0.9 801,984 + -0.3 802,004 + +0.3 802,010 + +0.0 802,011 - -0.6 802,011 - -0.9 802,011 - -0.7 802,013 + -0.2 802,014 - -0.2 802,074 - +0.0 802,077 + +0.6 802,077 + -0.2 802,077 + +0.8 802,077 + +1.1 802,077 + +1.2 802,078 - -0.1 802,078 - -0.4 802,078 - -0.5 802,110 + -0.2 802,111 - -0.6 802,111 - +0.6 802,117 - -0.6 802,117 - +0.1 802,217 - +1.4 802,229 + +0.4 802,230 - +0.3 802,231 + -0.3 802,231 + +0.3 802,231 + +0.3 802,232 - +0.0 802,238 + -0.1 802,238 + +0.0 802,324 + +0.7 802,324 + +0.7 802,325 - -0.4 802,334 + -1.2 802,335 - +0.8 802,388 + +0.4 802,433 - -2.3 802,433 - -1.2 802,536 - CA264_03445 0.17 -0.1 802,587 + CA264_03445 0.21 +0.6 802,588 - CA264_03445 0.21 +0.6 802,588 - CA264_03445 0.21 -0.7 802,689 + CA264_03445 0.29 +1.0 802,690 - CA264_03445 0.30 +0.4 802,690 - CA264_03445 0.30 -0.9 802,690 - +0.8 802,712 + CA264_03445 0.31 +0.7 802,712 + CA264_03445 0.31 -0.9 802,713 - CA264_03445 0.32 -1.5 802,717 + CA264_03445 0.32 +0.8 802,717 + CA264_03445 0.32 -1.2 802,717 + CA264_03445 0.32 +0.1 802,742 - CA264_03445 0.34 +0.8 802,742 - CA264_03445 0.34 -0.9 802,747 + CA264_03445 0.34 +0.1 802,747 + CA264_03445 0.34 -1.3 802,748 - CA264_03445 0.34 +0.3 802,787 - CA264_03445 0.38 -1.3 802,787 - CA264_03445 0.38 +0.6 802,787 - CA264_03445 0.38 -0.0 802,861 - CA264_03445 0.44 +0.2 802,901 + CA264_03445 0.47 -2.3 802,901 + CA264_03445 0.47 -0.7 802,950 - CA264_03445 0.51 +1.8 802,993 + CA264_03445 0.55 +0.3
Or see this region's nucleotide sequence