Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_02515 and CA264_02520 are separated by 99 nucleotides CA264_02520 and CA264_02525 are separated by 24 nucleotides
CA264_02515: CA264_02515 - nitrite reductase, at 586,848 to 588,941
_02515
CA264_02520: CA264_02520 - uroporphyrinogen-III C-methyltransferase, at 589,041 to 589,877
_02520
CA264_02525: CA264_02525 - siroheme synthase, at 589,902 to 591,431
_02525
Position (kb) 586
587
588
589 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 585.866 kb on + strand at 585.866 kb on + strand at 585.868 kb on + strand at 585.913 kb on - strand at 585.953 kb on - strand at 585.975 kb on + strand at 585.981 kb on + strand at 585.981 kb on + strand at 585.981 kb on + strand at 585.982 kb on - strand at 585.982 kb on - strand at 586.000 kb on - strand at 586.132 kb on - strand at 586.179 kb on + strand at 586.180 kb on - strand at 586.195 kb on - strand at 586.312 kb on + strand at 586.342 kb on + strand at 586.365 kb on - strand at 586.365 kb on - strand at 586.475 kb on + strand at 586.475 kb on + strand at 586.548 kb on - strand at 586.587 kb on - strand at 586.587 kb on - strand at 586.587 kb on - strand at 586.590 kb on - strand at 586.590 kb on - strand at 586.590 kb on - strand at 586.607 kb on + strand at 586.607 kb on + strand at 586.608 kb on - strand at 586.608 kb on - strand at 586.649 kb on + strand at 586.670 kb on + strand at 586.671 kb on - strand at 586.701 kb on - strand at 586.742 kb on - strand at 586.747 kb on + strand at 586.747 kb on + strand at 586.747 kb on + strand at 586.747 kb on + strand at 586.748 kb on - strand at 586.748 kb on - strand at 586.748 kb on - strand at 586.748 kb on - strand at 586.749 kb on + strand at 586.749 kb on + strand at 586.750 kb on - strand at 586.776 kb on - strand at 586.797 kb on + strand at 586.798 kb on - strand at 586.802 kb on + strand at 586.803 kb on - strand at 586.803 kb on - strand at 586.803 kb on - strand at 586.807 kb on + strand at 586.834 kb on + strand at 586.835 kb on - strand at 586.837 kb on - strand at 586.882 kb on + strand at 586.958 kb on + strand at 586.985 kb on - strand at 587.100 kb on - strand, within CA264_02515 at 587.195 kb on + strand, within CA264_02515 at 587.225 kb on - strand, within CA264_02515 at 587.225 kb on - strand, within CA264_02515 at 587.229 kb on - strand, within CA264_02515 at 587.234 kb on - strand, within CA264_02515 at 587.311 kb on - strand, within CA264_02515 at 587.349 kb on - strand, within CA264_02515 at 587.349 kb on - strand, within CA264_02515 at 587.354 kb on + strand, within CA264_02515 at 587.397 kb on + strand, within CA264_02515 at 587.397 kb on + strand, within CA264_02515 at 587.397 kb on + strand, within CA264_02515 at 587.398 kb on - strand, within CA264_02515 at 587.398 kb on - strand, within CA264_02515 at 587.398 kb on - strand, within CA264_02515 at 587.418 kb on - strand, within CA264_02515 at 587.540 kb on + strand, within CA264_02515 at 587.542 kb on + strand, within CA264_02515 at 587.621 kb on + strand, within CA264_02515 at 587.686 kb on + strand, within CA264_02515 at 587.686 kb on + strand, within CA264_02515 at 587.687 kb on - strand, within CA264_02515 at 587.687 kb on - strand, within CA264_02515 at 587.758 kb on + strand, within CA264_02515 at 587.777 kb on + strand, within CA264_02515 at 587.831 kb on + strand, within CA264_02515 at 587.835 kb on + strand, within CA264_02515 at 587.835 kb on + strand, within CA264_02515 at 587.835 kb on + strand, within CA264_02515 at 587.836 kb on - strand, within CA264_02515 at 587.836 kb on - strand, within CA264_02515 at 587.836 kb on - strand, within CA264_02515 at 587.870 kb on + strand, within CA264_02515 at 587.921 kb on - strand, within CA264_02515 at 587.927 kb on + strand, within CA264_02515 at 588.089 kb on + strand, within CA264_02515 at 588.093 kb on - strand, within CA264_02515 at 588.185 kb on + strand, within CA264_02515 at 588.185 kb on + strand, within CA264_02515 at 588.284 kb on - strand, within CA264_02515 at 588.318 kb on - strand, within CA264_02515 at 588.456 kb on + strand, within CA264_02515 at 588.464 kb on - strand, within CA264_02515 at 588.587 kb on - strand, within CA264_02515 at 588.590 kb on + strand, within CA264_02515 at 588.590 kb on + strand, within CA264_02515 at 588.590 kb on + strand, within CA264_02515 at 588.590 kb on + strand, within CA264_02515 at 588.591 kb on - strand, within CA264_02515 at 588.678 kb on + strand, within CA264_02515 at 588.875 kb on - strand at 588.972 kb on - strand at 588.996 kb on + strand at 588.997 kb on - strand at 589.063 kb on + strand at 589.070 kb on + strand at 589.070 kb on + strand at 589.107 kb on + strand at 589.107 kb on + strand at 589.109 kb on + strand at 589.133 kb on - strand, within CA264_02520 at 589.133 kb on - strand, within CA264_02520 at 589.237 kb on + strand, within CA264_02520 at 589.242 kb on + strand, within CA264_02520 at 589.267 kb on + strand, within CA264_02520 at 589.315 kb on + strand, within CA264_02520 at 589.469 kb on + strand, within CA264_02520 at 589.507 kb on + strand, within CA264_02520 at 589.507 kb on + strand, within CA264_02520 at 589.508 kb on - strand, within CA264_02520 at 589.538 kb on + strand, within CA264_02520 at 589.539 kb on - strand, within CA264_02520 at 589.577 kb on - strand, within CA264_02520 at 589.610 kb on - strand, within CA264_02520 at 589.610 kb on - strand, within CA264_02520 at 589.624 kb on + strand, within CA264_02520 at 589.629 kb on - strand, within CA264_02520 at 589.629 kb on - strand, within CA264_02520 at 589.676 kb on + strand, within CA264_02520 at 589.676 kb on + strand, within CA264_02520 at 589.677 kb on - strand, within CA264_02520 at 589.691 kb on - strand, within CA264_02520 at 589.742 kb on + strand, within CA264_02520 at 589.743 kb on - strand, within CA264_02520 at 589.746 kb on - strand, within CA264_02520 at 589.746 kb on - strand, within CA264_02520 at 589.749 kb on - strand, within CA264_02520 at 589.811 kb on + strand at 589.811 kb on + strand at 589.811 kb on + strand at 589.812 kb on - strand at 589.812 kb on - strand at 589.815 kb on + strand at 589.815 kb on + strand at 589.873 kb on + strand at 589.874 kb on - strand at 589.874 kb on - strand at 589.874 kb on - strand at 589.875 kb on + strand at 589.876 kb on - strand at 589.876 kb on - strand at 589.879 kb on + strand at 589.881 kb on + strand at 589.881 kb on + strand at 589.897 kb on + strand at 589.926 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 585,866 + -0.4 585,866 + +0.9 585,868 + -0.4 585,913 - -1.7 585,953 - -0.1 585,975 + -2.1 585,981 + -1.4 585,981 + -1.0 585,981 + +0.6 585,982 - +0.1 585,982 - -0.5 586,000 - -0.6 586,132 - -0.4 586,179 + -0.2 586,180 - -0.5 586,195 - +0.5 586,312 + -1.3 586,342 + +0.7 586,365 - -0.7 586,365 - -0.6 586,475 + -0.6 586,475 + +0.1 586,548 - -0.7 586,587 - -0.6 586,587 - +1.7 586,587 - -0.1 586,590 - -0.1 586,590 - -0.3 586,590 - +0.3 586,607 + -0.1 586,607 + -0.6 586,608 - -0.3 586,608 - +0.1 586,649 + +0.1 586,670 + -0.2 586,671 - -1.9 586,701 - -1.7 586,742 - -1.0 586,747 + -2.1 586,747 + -1.4 586,747 + -1.4 586,747 + -0.5 586,748 - -1.1 586,748 - -0.4 586,748 - -0.9 586,748 - -2.1 586,749 + -2.3 586,749 + -0.4 586,750 - +0.0 586,776 - -0.7 586,797 + -1.3 586,798 - +0.2 586,802 + -2.3 586,803 - -1.4 586,803 - -0.1 586,803 - -1.1 586,807 + -0.2 586,834 + -1.6 586,835 - -0.3 586,837 - +0.1 586,882 + -0.9 586,958 + -0.3 586,985 - +0.9 587,100 - CA264_02515 0.12 -0.9 587,195 + CA264_02515 0.17 -1.3 587,225 - CA264_02515 0.18 -0.1 587,225 - CA264_02515 0.18 +0.3 587,229 - CA264_02515 0.18 -0.4 587,234 - CA264_02515 0.18 -0.8 587,311 - CA264_02515 0.22 -0.5 587,349 - CA264_02515 0.24 -0.4 587,349 - CA264_02515 0.24 -0.3 587,354 + CA264_02515 0.24 -0.9 587,397 + CA264_02515 0.26 -0.9 587,397 + CA264_02515 0.26 -1.4 587,397 + CA264_02515 0.26 -0.8 587,398 - CA264_02515 0.26 -0.6 587,398 - CA264_02515 0.26 +0.7 587,398 - CA264_02515 0.26 -0.1 587,418 - CA264_02515 0.27 -0.1 587,540 + CA264_02515 0.33 +1.4 587,542 + CA264_02515 0.33 -0.9 587,621 + CA264_02515 0.37 -1.1 587,686 + CA264_02515 0.40 -1.6 587,686 + CA264_02515 0.40 -1.5 587,687 - CA264_02515 0.40 -0.7 587,687 - CA264_02515 0.40 -1.0 587,758 + CA264_02515 0.43 -0.1 587,777 + CA264_02515 0.44 -1.7 587,831 + CA264_02515 0.47 -1.7 587,835 + CA264_02515 0.47 -0.1 587,835 + CA264_02515 0.47 -1.2 587,835 + CA264_02515 0.47 -1.1 587,836 - CA264_02515 0.47 -2.3 587,836 - CA264_02515 0.47 -1.0 587,836 - CA264_02515 0.47 -1.3 587,870 + CA264_02515 0.49 -1.3 587,921 - CA264_02515 0.51 -0.5 587,927 + CA264_02515 0.52 -1.1 588,089 + CA264_02515 0.59 -0.6 588,093 - CA264_02515 0.59 -1.9 588,185 + CA264_02515 0.64 -0.8 588,185 + CA264_02515 0.64 -1.4 588,284 - CA264_02515 0.69 -0.9 588,318 - CA264_02515 0.70 -1.9 588,456 + CA264_02515 0.77 -0.4 588,464 - CA264_02515 0.77 -0.2 588,587 - CA264_02515 0.83 +1.0 588,590 + CA264_02515 0.83 -0.1 588,590 + CA264_02515 0.83 -2.2 588,590 + CA264_02515 0.83 -0.9 588,590 + CA264_02515 0.83 -0.4 588,591 - CA264_02515 0.83 -1.5 588,678 + CA264_02515 0.87 -0.2 588,875 - +0.2 588,972 - -0.2 588,996 + -1.1 588,997 - -0.7 589,063 + -1.2 589,070 + -0.2 589,070 + -1.4 589,107 + -3.4 589,107 + -1.6 589,109 + -1.1 589,133 - CA264_02520 0.11 -1.3 589,133 - CA264_02520 0.11 -0.5 589,237 + CA264_02520 0.23 -0.7 589,242 + CA264_02520 0.24 -0.8 589,267 + CA264_02520 0.27 -0.7 589,315 + CA264_02520 0.33 -1.2 589,469 + CA264_02520 0.51 +0.5 589,507 + CA264_02520 0.56 -1.0 589,507 + CA264_02520 0.56 +0.9 589,508 - CA264_02520 0.56 -0.9 589,538 + CA264_02520 0.59 -0.2 589,539 - CA264_02520 0.59 +0.3 589,577 - CA264_02520 0.64 -1.8 589,610 - CA264_02520 0.68 -1.5 589,610 - CA264_02520 0.68 -0.7 589,624 + CA264_02520 0.70 -0.1 589,629 - CA264_02520 0.70 -0.8 589,629 - CA264_02520 0.70 +1.3 589,676 + CA264_02520 0.76 -1.5 589,676 + CA264_02520 0.76 -0.7 589,677 - CA264_02520 0.76 +0.9 589,691 - CA264_02520 0.78 -0.8 589,742 + CA264_02520 0.84 -0.9 589,743 - CA264_02520 0.84 -0.1 589,746 - CA264_02520 0.84 -1.1 589,746 - CA264_02520 0.84 -0.2 589,749 - CA264_02520 0.85 +0.9 589,811 + +0.1 589,811 + -1.1 589,811 + -0.2 589,812 - -0.1 589,812 - -0.7 589,815 + +0.2 589,815 + -0.1 589,873 + -0.2 589,874 - -0.2 589,874 - +0.7 589,874 - -0.1 589,875 + +0.7 589,876 - -1.7 589,876 - +0.9 589,879 + -0.1 589,881 + -1.0 589,881 + +1.9 589,897 + -0.7 589,926 - -0.3
Or see this region's nucleotide sequence