Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_02140

Experiment: marine broth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_02130 and CA264_02135 are separated by 24 nucleotidesCA264_02135 and CA264_02140 are separated by 140 nucleotidesCA264_02140 and CA264_02145 are separated by 275 nucleotides CA264_02130: CA264_02130 - pseudouridine synthase, at 491,252 to 491,926 _02130 CA264_02135: CA264_02135 - GNAT family N-acetyltransferase, at 491,951 to 492,520 _02135 CA264_02140: CA264_02140 - hypothetical protein, at 492,661 to 494,739 _02140 CA264_02145: CA264_02145 - beta-ketoacyl-ACP reductase, at 495,015 to 495,761 _02145 Position (kb) 492 493 494 495Strain fitness (log2 ratio) -2 -1 0 1 2 3at 491.716 kb on - strand, within CA264_02130at 491.716 kb on - strand, within CA264_02130at 491.727 kb on - strand, within CA264_02130at 491.727 kb on - strand, within CA264_02130at 491.731 kb on + strand, within CA264_02130at 491.891 kb on + strandat 491.919 kb on + strandat 491.919 kb on + strandat 491.919 kb on + strandat 491.920 kb on - strandat 491.920 kb on - strandat 491.920 kb on - strandat 491.920 kb on - strandat 491.939 kb on - strandat 491.939 kb on - strandat 491.943 kb on - strandat 491.952 kb on + strandat 491.953 kb on - strandat 492.036 kb on + strand, within CA264_02135at 492.036 kb on + strand, within CA264_02135at 492.164 kb on + strand, within CA264_02135at 492.165 kb on - strand, within CA264_02135at 492.165 kb on - strand, within CA264_02135at 492.166 kb on + strand, within CA264_02135at 492.166 kb on + strand, within CA264_02135at 492.218 kb on + strand, within CA264_02135at 492.218 kb on + strand, within CA264_02135at 492.219 kb on - strand, within CA264_02135at 492.284 kb on + strand, within CA264_02135at 492.358 kb on - strand, within CA264_02135at 492.405 kb on + strand, within CA264_02135at 492.406 kb on - strand, within CA264_02135at 492.514 kb on + strandat 492.515 kb on - strandat 492.591 kb on - strandat 492.595 kb on + strandat 492.597 kb on + strandat 492.597 kb on + strandat 492.598 kb on - strandat 492.645 kb on - strandat 492.665 kb on + strandat 492.666 kb on - strandat 492.677 kb on + strandat 492.678 kb on - strandat 492.784 kb on - strandat 492.784 kb on - strandat 492.836 kb on + strandat 492.964 kb on - strand, within CA264_02140at 492.981 kb on - strand, within CA264_02140at 493.015 kb on + strand, within CA264_02140at 493.103 kb on + strand, within CA264_02140at 493.104 kb on - strand, within CA264_02140at 493.167 kb on - strand, within CA264_02140at 493.186 kb on + strand, within CA264_02140at 493.187 kb on - strand, within CA264_02140at 493.187 kb on - strand, within CA264_02140at 493.254 kb on - strand, within CA264_02140at 493.255 kb on + strand, within CA264_02140at 493.255 kb on + strand, within CA264_02140at 493.398 kb on - strand, within CA264_02140at 493.403 kb on - strand, within CA264_02140at 493.403 kb on - strand, within CA264_02140at 493.429 kb on + strand, within CA264_02140at 493.429 kb on + strand, within CA264_02140at 493.429 kb on + strand, within CA264_02140at 493.430 kb on - strand, within CA264_02140at 493.430 kb on - strand, within CA264_02140at 493.430 kb on - strand, within CA264_02140at 493.615 kb on + strand, within CA264_02140at 493.615 kb on + strand, within CA264_02140at 493.616 kb on - strand, within CA264_02140at 493.616 kb on - strand, within CA264_02140at 493.619 kb on + strand, within CA264_02140at 493.620 kb on - strand, within CA264_02140at 493.713 kb on - strand, within CA264_02140at 493.726 kb on - strand, within CA264_02140at 493.726 kb on - strand, within CA264_02140at 493.736 kb on - strand, within CA264_02140at 493.736 kb on - strand, within CA264_02140at 493.736 kb on - strand, within CA264_02140at 493.746 kb on + strand, within CA264_02140at 493.747 kb on - strand, within CA264_02140at 493.780 kb on + strand, within CA264_02140at 493.830 kb on + strand, within CA264_02140at 493.830 kb on + strand, within CA264_02140at 493.840 kb on + strand, within CA264_02140at 493.865 kb on + strand, within CA264_02140at 493.924 kb on + strand, within CA264_02140at 493.928 kb on + strand, within CA264_02140at 493.929 kb on - strand, within CA264_02140at 494.115 kb on - strand, within CA264_02140at 494.119 kb on + strand, within CA264_02140at 494.124 kb on + strand, within CA264_02140at 494.124 kb on + strand, within CA264_02140at 494.125 kb on - strand, within CA264_02140at 494.125 kb on - strand, within CA264_02140at 494.125 kb on - strand, within CA264_02140at 494.285 kb on + strand, within CA264_02140at 494.286 kb on - strand, within CA264_02140at 494.399 kb on + strand, within CA264_02140at 494.496 kb on + strand, within CA264_02140at 494.497 kb on - strand, within CA264_02140at 494.517 kb on + strand, within CA264_02140at 494.518 kb on - strand, within CA264_02140at 494.584 kb on + strandat 494.584 kb on + strandat 494.585 kb on - strandat 494.616 kb on - strandat 494.616 kb on - strandat 494.616 kb on - strandat 494.652 kb on - strandat 494.666 kb on + strandat 494.666 kb on + strandat 494.667 kb on - strandat 494.667 kb on - strandat 494.695 kb on + strandat 494.695 kb on + strandat 494.696 kb on - strandat 494.696 kb on - strandat 494.697 kb on + strandat 494.697 kb on + strandat 494.698 kb on - strandat 494.720 kb on - strandat 494.769 kb on + strandat 494.775 kb on - strandat 494.933 kb on + strandat 494.933 kb on + strandat 494.934 kb on - strandat 494.934 kb on - strandat 494.934 kb on - strandat 494.936 kb on - strandat 494.936 kb on - strandat 494.940 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction marine broth
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491,716 - CA264_02130 0.69 +1.0
491,716 - CA264_02130 0.69 -0.0
491,727 - CA264_02130 0.70 -0.5
491,727 - CA264_02130 0.70 -0.2
491,731 + CA264_02130 0.71 +0.2
491,891 + +1.6
491,919 + +0.7
491,919 + +0.1
491,919 + -0.0
491,920 - -0.0
491,920 - +0.8
491,920 - -0.3
491,920 - +1.3
491,939 - -0.0
491,939 - -0.4
491,943 - -0.3
491,952 + +0.3
491,953 - -0.4
492,036 + CA264_02135 0.15 -1.0
492,036 + CA264_02135 0.15 -0.4
492,164 + CA264_02135 0.37 +0.1
492,165 - CA264_02135 0.38 -0.2
492,165 - CA264_02135 0.38 +0.5
492,166 + CA264_02135 0.38 +0.4
492,166 + CA264_02135 0.38 +2.0
492,218 + CA264_02135 0.47 -1.6
492,218 + CA264_02135 0.47 -1.8
492,219 - CA264_02135 0.47 -0.0
492,284 + CA264_02135 0.58 -0.9
492,358 - CA264_02135 0.71 -0.8
492,405 + CA264_02135 0.80 +0.1
492,406 - CA264_02135 0.80 +0.2
492,514 + -0.6
492,515 - -1.8
492,591 - +1.0
492,595 + +0.8
492,597 + -0.0
492,597 + -0.6
492,598 - -0.8
492,645 - -1.6
492,665 + -0.4
492,666 - -0.9
492,677 + -0.2
492,678 - -0.0
492,784 - -0.0
492,784 - -0.6
492,836 + -0.9
492,964 - CA264_02140 0.15 -0.2
492,981 - CA264_02140 0.15 -0.3
493,015 + CA264_02140 0.17 +0.4
493,103 + CA264_02140 0.21 -0.4
493,104 - CA264_02140 0.21 -0.6
493,167 - CA264_02140 0.24 -1.1
493,186 + CA264_02140 0.25 -0.2
493,187 - CA264_02140 0.25 -1.4
493,187 - CA264_02140 0.25 -1.2
493,254 - CA264_02140 0.29 -0.9
493,255 + CA264_02140 0.29 -1.3
493,255 + CA264_02140 0.29 -0.0
493,398 - CA264_02140 0.35 -0.1
493,403 - CA264_02140 0.36 -0.2
493,403 - CA264_02140 0.36 +0.3
493,429 + CA264_02140 0.37 +0.6
493,429 + CA264_02140 0.37 -1.0
493,429 + CA264_02140 0.37 -0.2
493,430 - CA264_02140 0.37 -0.6
493,430 - CA264_02140 0.37 -1.0
493,430 - CA264_02140 0.37 -0.1
493,615 + CA264_02140 0.46 -0.9
493,615 + CA264_02140 0.46 -0.4
493,616 - CA264_02140 0.46 -2.0
493,616 - CA264_02140 0.46 -0.8
493,619 + CA264_02140 0.46 -0.7
493,620 - CA264_02140 0.46 -0.9
493,713 - CA264_02140 0.51 -1.8
493,726 - CA264_02140 0.51 -2.6
493,726 - CA264_02140 0.51 -0.5
493,736 - CA264_02140 0.52 -0.7
493,736 - CA264_02140 0.52 -2.0
493,736 - CA264_02140 0.52 +1.2
493,746 + CA264_02140 0.52 -1.2
493,747 - CA264_02140 0.52 -0.1
493,780 + CA264_02140 0.54 -0.5
493,830 + CA264_02140 0.56 -0.3
493,830 + CA264_02140 0.56 +0.7
493,840 + CA264_02140 0.57 -1.2
493,865 + CA264_02140 0.58 +0.4
493,924 + CA264_02140 0.61 -0.4
493,928 + CA264_02140 0.61 -0.4
493,929 - CA264_02140 0.61 -1.7
494,115 - CA264_02140 0.70 -0.6
494,119 + CA264_02140 0.70 +1.0
494,124 + CA264_02140 0.70 -0.5
494,124 + CA264_02140 0.70 -1.8
494,125 - CA264_02140 0.70 +1.0
494,125 - CA264_02140 0.70 +0.2
494,125 - CA264_02140 0.70 +1.0
494,285 + CA264_02140 0.78 +1.4
494,286 - CA264_02140 0.78 -1.2
494,399 + CA264_02140 0.84 -0.8
494,496 + CA264_02140 0.88 -2.3
494,497 - CA264_02140 0.88 -0.2
494,517 + CA264_02140 0.89 +3.0
494,518 - CA264_02140 0.89 -1.0
494,584 + +0.1
494,584 + +0.6
494,585 - -0.1
494,616 - -0.1
494,616 - -0.7
494,616 - -1.5
494,652 - -1.1
494,666 + +0.6
494,666 + -0.6
494,667 - -0.3
494,667 - -0.2
494,695 + +0.1
494,695 + -0.6
494,696 - -0.4
494,696 - -0.2
494,697 + -0.6
494,697 + -1.0
494,698 - -0.1
494,720 - +1.0
494,769 + -0.2
494,775 - +1.1
494,933 + -1.0
494,933 + -0.6
494,934 - +0.7
494,934 - -0.2
494,934 - +0.9
494,936 - -0.4
494,936 - -0.8
494,940 - -1.6

Or see this region's nucleotide sequence