Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_02035 and CA264_02040 are separated by 272 nucleotides CA264_02040 and CA264_02045 are separated by 312 nucleotides CA264_02045 and CA264_02050 are separated by 103 nucleotides
CA264_02035: CA264_02035 - hypothetical protein, at 468,657 to 469,526
_02035
CA264_02040: CA264_02040 - zinc carboxypeptidase, at 469,799 to 472,351
_02040
CA264_02045: CA264_02045 - DNA damage-inducible protein DinB, at 472,664 to 473,197
_02045
CA264_02050: CA264_02050 - anion transporter, at 473,301 to 474,716
_02050
Position (kb) 469
470
471
472
473 Strain fitness (log2 ratio) -2
-1
0
1
2 at 468.809 kb on - strand, within CA264_02035 at 468.869 kb on - strand, within CA264_02035 at 468.931 kb on - strand, within CA264_02035 at 469.072 kb on + strand, within CA264_02035 at 469.135 kb on + strand, within CA264_02035 at 469.136 kb on - strand, within CA264_02035 at 469.158 kb on - strand, within CA264_02035 at 469.158 kb on - strand, within CA264_02035 at 469.186 kb on - strand, within CA264_02035 at 469.222 kb on + strand, within CA264_02035 at 469.223 kb on - strand, within CA264_02035 at 469.377 kb on + strand, within CA264_02035 at 469.377 kb on + strand, within CA264_02035 at 469.377 kb on + strand, within CA264_02035 at 469.377 kb on + strand, within CA264_02035 at 469.378 kb on - strand, within CA264_02035 at 469.378 kb on - strand, within CA264_02035 at 469.378 kb on - strand, within CA264_02035 at 469.378 kb on - strand, within CA264_02035 at 469.378 kb on - strand, within CA264_02035 at 469.430 kb on + strand, within CA264_02035 at 469.430 kb on + strand, within CA264_02035 at 469.431 kb on - strand, within CA264_02035 at 469.481 kb on + strand at 469.481 kb on + strand at 469.481 kb on + strand at 469.481 kb on + strand at 469.482 kb on - strand at 469.482 kb on - strand at 469.482 kb on - strand at 469.482 kb on - strand at 469.482 kb on - strand at 469.483 kb on + strand at 469.484 kb on - strand at 469.488 kb on + strand at 469.526 kb on + strand at 469.526 kb on + strand at 469.526 kb on + strand at 469.527 kb on - strand at 469.560 kb on + strand at 469.560 kb on + strand at 469.560 kb on + strand at 469.561 kb on - strand at 469.561 kb on - strand at 469.699 kb on + strand at 469.759 kb on + strand at 469.759 kb on + strand at 469.763 kb on - strand at 469.773 kb on + strand at 469.774 kb on - strand at 469.775 kb on + strand at 469.775 kb on + strand at 469.776 kb on - strand at 469.776 kb on - strand at 469.776 kb on - strand at 469.781 kb on + strand at 469.781 kb on + strand at 469.786 kb on + strand at 469.787 kb on - strand at 469.792 kb on + strand at 469.793 kb on - strand at 469.793 kb on - strand at 469.793 kb on - strand at 469.794 kb on + strand at 469.795 kb on - strand at 469.984 kb on + strand at 469.984 kb on + strand at 470.001 kb on - strand at 470.039 kb on + strand at 470.159 kb on + strand, within CA264_02040 at 470.160 kb on - strand, within CA264_02040 at 470.213 kb on + strand, within CA264_02040 at 470.246 kb on - strand, within CA264_02040 at 470.324 kb on + strand, within CA264_02040 at 470.324 kb on + strand, within CA264_02040 at 470.325 kb on - strand, within CA264_02040 at 470.414 kb on + strand, within CA264_02040 at 470.415 kb on - strand, within CA264_02040 at 470.415 kb on - strand, within CA264_02040 at 470.480 kb on + strand, within CA264_02040 at 470.481 kb on - strand, within CA264_02040 at 470.481 kb on - strand, within CA264_02040 at 470.541 kb on - strand, within CA264_02040 at 470.578 kb on + strand, within CA264_02040 at 470.580 kb on + strand, within CA264_02040 at 470.633 kb on + strand, within CA264_02040 at 470.633 kb on + strand, within CA264_02040 at 470.634 kb on - strand, within CA264_02040 at 470.657 kb on + strand, within CA264_02040 at 470.658 kb on - strand, within CA264_02040 at 470.718 kb on - strand, within CA264_02040 at 470.718 kb on - strand, within CA264_02040 at 470.734 kb on + strand, within CA264_02040 at 470.735 kb on - strand, within CA264_02040 at 470.741 kb on + strand, within CA264_02040 at 470.741 kb on + strand, within CA264_02040 at 470.741 kb on + strand, within CA264_02040 at 470.742 kb on - strand, within CA264_02040 at 470.742 kb on - strand, within CA264_02040 at 470.742 kb on - strand, within CA264_02040 at 470.742 kb on - strand, within CA264_02040 at 470.742 kb on - strand, within CA264_02040 at 470.860 kb on + strand, within CA264_02040 at 470.906 kb on + strand, within CA264_02040 at 470.907 kb on - strand, within CA264_02040 at 470.939 kb on + strand, within CA264_02040 at 470.940 kb on - strand, within CA264_02040 at 471.093 kb on + strand, within CA264_02040 at 471.128 kb on + strand, within CA264_02040 at 471.128 kb on + strand, within CA264_02040 at 471.129 kb on - strand, within CA264_02040 at 471.129 kb on - strand, within CA264_02040 at 471.197 kb on + strand, within CA264_02040 at 471.198 kb on - strand, within CA264_02040 at 471.230 kb on + strand, within CA264_02040 at 471.245 kb on + strand, within CA264_02040 at 471.313 kb on - strand, within CA264_02040 at 471.323 kb on + strand, within CA264_02040 at 471.324 kb on - strand, within CA264_02040 at 471.368 kb on - strand, within CA264_02040 at 471.441 kb on - strand, within CA264_02040 at 471.533 kb on - strand, within CA264_02040 at 471.631 kb on + strand, within CA264_02040 at 471.672 kb on + strand, within CA264_02040 at 471.673 kb on - strand, within CA264_02040 at 471.673 kb on - strand, within CA264_02040 at 471.852 kb on + strand, within CA264_02040 at 471.986 kb on + strand, within CA264_02040 at 471.987 kb on - strand, within CA264_02040 at 472.091 kb on + strand, within CA264_02040 at 472.091 kb on + strand, within CA264_02040 at 472.092 kb on - strand, within CA264_02040 at 472.092 kb on - strand, within CA264_02040 at 472.260 kb on + strand at 472.261 kb on - strand at 472.265 kb on + strand at 472.266 kb on - strand at 472.342 kb on - strand at 472.369 kb on - strand at 472.607 kb on - strand at 472.607 kb on - strand at 472.609 kb on - strand at 472.609 kb on - strand at 472.609 kb on - strand at 472.611 kb on + strand at 472.612 kb on - strand at 472.613 kb on + strand at 472.613 kb on + strand at 472.614 kb on - strand at 472.614 kb on - strand at 472.614 kb on - strand at 472.614 kb on - strand at 472.614 kb on - strand at 472.616 kb on + strand at 472.618 kb on + strand at 472.619 kb on - strand at 472.619 kb on - strand at 472.643 kb on + strand at 472.643 kb on + strand at 472.644 kb on - strand at 472.646 kb on - strand at 472.656 kb on - strand at 472.656 kb on - strand at 472.663 kb on + strand at 472.664 kb on - strand at 472.679 kb on - strand at 472.680 kb on + strand at 472.684 kb on + strand at 472.685 kb on - strand at 472.685 kb on - strand at 472.727 kb on + strand, within CA264_02045 at 472.728 kb on - strand, within CA264_02045 at 472.756 kb on + strand, within CA264_02045 at 472.778 kb on + strand, within CA264_02045 at 472.828 kb on - strand, within CA264_02045 at 472.856 kb on - strand, within CA264_02045 at 472.857 kb on + strand, within CA264_02045 at 472.858 kb on - strand, within CA264_02045 at 472.858 kb on - strand, within CA264_02045 at 473.009 kb on - strand, within CA264_02045 at 473.022 kb on - strand, within CA264_02045 at 473.113 kb on - strand, within CA264_02045 at 473.113 kb on - strand, within CA264_02045 at 473.113 kb on - strand, within CA264_02045 at 473.113 kb on - strand, within CA264_02045 at 473.113 kb on - strand, within CA264_02045 at 473.132 kb on + strand, within CA264_02045 at 473.133 kb on - strand, within CA264_02045 at 473.134 kb on + strand, within CA264_02045 at 473.134 kb on + strand, within CA264_02045 at 473.135 kb on - strand, within CA264_02045 at 473.135 kb on - strand, within CA264_02045 at 473.139 kb on + strand, within CA264_02045 at 473.140 kb on - strand, within CA264_02045 at 473.200 kb on + strand at 473.200 kb on + strand at 473.201 kb on - strand at 473.201 kb on - strand at 473.204 kb on + strand at 473.204 kb on + strand at 473.204 kb on + strand at 473.204 kb on + strand at 473.204 kb on + strand at 473.204 kb on + strand at 473.205 kb on - strand at 473.206 kb on + strand at 473.206 kb on + strand at 473.207 kb on - strand at 473.207 kb on - strand at 473.207 kb on - strand at 473.207 kb on - strand at 473.210 kb on + strand at 473.210 kb on + strand at 473.211 kb on - strand at 473.211 kb on - strand at 473.212 kb on + strand at 473.213 kb on - strand at 473.243 kb on + strand at 473.262 kb on + strand at 473.263 kb on - strand at 473.263 kb on - strand at 473.266 kb on + strand at 473.273 kb on + strand at 473.273 kb on + strand at 473.273 kb on + strand at 473.274 kb on - strand at 473.274 kb on - strand at 473.274 kb on - strand at 473.277 kb on + strand at 473.277 kb on + strand at 473.342 kb on + strand at 473.343 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 468,809 - CA264_02035 0.17 -0.2 468,869 - CA264_02035 0.24 -0.7 468,931 - CA264_02035 0.31 -0.5 469,072 + CA264_02035 0.48 -0.5 469,135 + CA264_02035 0.55 +0.1 469,136 - CA264_02035 0.55 -0.8 469,158 - CA264_02035 0.58 -0.2 469,158 - CA264_02035 0.58 -0.0 469,186 - CA264_02035 0.61 -0.3 469,222 + CA264_02035 0.65 +0.2 469,223 - CA264_02035 0.65 +0.5 469,377 + CA264_02035 0.83 -0.2 469,377 + CA264_02035 0.83 -0.0 469,377 + CA264_02035 0.83 +0.4 469,377 + CA264_02035 0.83 +0.4 469,378 - CA264_02035 0.83 +0.4 469,378 - CA264_02035 0.83 -0.2 469,378 - CA264_02035 0.83 -0.1 469,378 - CA264_02035 0.83 -0.8 469,378 - CA264_02035 0.83 +0.8 469,430 + CA264_02035 0.89 +0.8 469,430 + CA264_02035 0.89 +0.2 469,431 - CA264_02035 0.89 +0.5 469,481 + -0.1 469,481 + +0.1 469,481 + +0.1 469,481 + -0.3 469,482 - -1.4 469,482 - +0.0 469,482 - -0.6 469,482 - -0.9 469,482 - -0.5 469,483 + -0.4 469,484 - -0.8 469,488 + -0.8 469,526 + +1.2 469,526 + -0.4 469,526 + -0.0 469,527 - -0.0 469,560 + +0.1 469,560 + +0.2 469,560 + +0.3 469,561 - +0.3 469,561 - -0.0 469,699 + +0.2 469,759 + -0.5 469,759 + +1.0 469,763 - -2.0 469,773 + +0.1 469,774 - -0.1 469,775 + -0.2 469,775 + +0.2 469,776 - -1.2 469,776 - +1.1 469,776 - +2.0 469,781 + -0.6 469,781 + +0.2 469,786 + -0.7 469,787 - -1.0 469,792 + +0.4 469,793 - -0.1 469,793 - -1.0 469,793 - -0.5 469,794 + -0.0 469,795 - -1.2 469,984 + -0.8 469,984 + -0.3 470,001 - -0.6 470,039 + +0.3 470,159 + CA264_02040 0.14 -1.0 470,160 - CA264_02040 0.14 -0.2 470,213 + CA264_02040 0.16 +0.4 470,246 - CA264_02040 0.18 -0.8 470,324 + CA264_02040 0.21 -1.3 470,324 + CA264_02040 0.21 +1.3 470,325 - CA264_02040 0.21 -1.2 470,414 + CA264_02040 0.24 +0.7 470,415 - CA264_02040 0.24 +0.2 470,415 - CA264_02040 0.24 -1.0 470,480 + CA264_02040 0.27 -1.0 470,481 - CA264_02040 0.27 -0.2 470,481 - CA264_02040 0.27 -0.9 470,541 - CA264_02040 0.29 +0.6 470,578 + CA264_02040 0.31 -0.0 470,580 + CA264_02040 0.31 -0.3 470,633 + CA264_02040 0.33 -0.3 470,633 + CA264_02040 0.33 +0.2 470,634 - CA264_02040 0.33 -0.0 470,657 + CA264_02040 0.34 -1.8 470,658 - CA264_02040 0.34 +0.1 470,718 - CA264_02040 0.36 -0.2 470,718 - CA264_02040 0.36 +0.3 470,734 + CA264_02040 0.37 +0.1 470,735 - CA264_02040 0.37 -1.2 470,741 + CA264_02040 0.37 -0.0 470,741 + CA264_02040 0.37 -0.7 470,741 + CA264_02040 0.37 +0.5 470,742 - CA264_02040 0.37 +0.8 470,742 - CA264_02040 0.37 -0.2 470,742 - CA264_02040 0.37 +0.8 470,742 - CA264_02040 0.37 +0.7 470,742 - CA264_02040 0.37 -0.6 470,860 + CA264_02040 0.42 +0.3 470,906 + CA264_02040 0.43 -1.3 470,907 - CA264_02040 0.43 +1.7 470,939 + CA264_02040 0.45 -0.1 470,940 - CA264_02040 0.45 -2.5 471,093 + CA264_02040 0.51 -2.3 471,128 + CA264_02040 0.52 +0.7 471,128 + CA264_02040 0.52 -0.5 471,129 - CA264_02040 0.52 -0.6 471,129 - CA264_02040 0.52 +0.1 471,197 + CA264_02040 0.55 +0.2 471,198 - CA264_02040 0.55 -0.0 471,230 + CA264_02040 0.56 -0.7 471,245 + CA264_02040 0.57 -0.9 471,313 - CA264_02040 0.59 -0.3 471,323 + CA264_02040 0.60 +0.2 471,324 - CA264_02040 0.60 -0.0 471,368 - CA264_02040 0.61 -0.7 471,441 - CA264_02040 0.64 +0.1 471,533 - CA264_02040 0.68 +0.4 471,631 + CA264_02040 0.72 -1.2 471,672 + CA264_02040 0.73 +1.0 471,673 - CA264_02040 0.73 +0.3 471,673 - CA264_02040 0.73 +0.4 471,852 + CA264_02040 0.80 -1.0 471,986 + CA264_02040 0.86 -2.5 471,987 - CA264_02040 0.86 +0.5 472,091 + CA264_02040 0.90 -0.2 472,091 + CA264_02040 0.90 -0.4 472,092 - CA264_02040 0.90 -0.2 472,092 - CA264_02040 0.90 +1.0 472,260 + +0.4 472,261 - +1.1 472,265 + +0.2 472,266 - -0.0 472,342 - -1.0 472,369 - +0.6 472,607 - +2.0 472,607 - -0.6 472,609 - -1.1 472,609 - +0.5 472,609 - +0.1 472,611 + +0.1 472,612 - -1.5 472,613 + +0.3 472,613 + -0.9 472,614 - -0.2 472,614 - -0.0 472,614 - -0.7 472,614 - +0.7 472,614 - -0.7 472,616 + +1.0 472,618 + -0.3 472,619 - +0.3 472,619 - -1.7 472,643 + +0.3 472,643 + +0.1 472,644 - -1.1 472,646 - +2.0 472,656 - -0.0 472,656 - +0.2 472,663 + +0.5 472,664 - -1.0 472,679 - -1.0 472,680 + -0.8 472,684 + -0.7 472,685 - +0.3 472,685 - -0.0 472,727 + CA264_02045 0.12 -0.6 472,728 - CA264_02045 0.12 +0.2 472,756 + CA264_02045 0.17 +0.4 472,778 + CA264_02045 0.21 -0.2 472,828 - CA264_02045 0.31 -2.2 472,856 - CA264_02045 0.36 -0.0 472,857 + CA264_02045 0.36 +1.5 472,858 - CA264_02045 0.36 +1.2 472,858 - CA264_02045 0.36 -0.3 473,009 - CA264_02045 0.65 -0.4 473,022 - CA264_02045 0.67 -0.0 473,113 - CA264_02045 0.84 -0.1 473,113 - CA264_02045 0.84 -0.5 473,113 - CA264_02045 0.84 -0.5 473,113 - CA264_02045 0.84 -0.8 473,113 - CA264_02045 0.84 +0.5 473,132 + CA264_02045 0.88 -1.5 473,133 - CA264_02045 0.88 -0.3 473,134 + CA264_02045 0.88 -0.0 473,134 + CA264_02045 0.88 -2.3 473,135 - CA264_02045 0.88 +0.0 473,135 - CA264_02045 0.88 -0.0 473,139 + CA264_02045 0.89 -0.3 473,140 - CA264_02045 0.89 -0.0 473,200 + +0.3 473,200 + +0.1 473,201 - +0.4 473,201 - -1.0 473,204 + +1.6 473,204 + -0.2 473,204 + +0.4 473,204 + -0.9 473,204 + +0.8 473,204 + -0.0 473,205 - -0.0 473,206 + -0.3 473,206 + +1.2 473,207 - +2.6 473,207 - -0.0 473,207 - -0.4 473,207 - -0.5 473,210 + +0.0 473,210 + -1.3 473,211 - +1.2 473,211 - -0.5 473,212 + -0.4 473,213 - +2.0 473,243 + -0.6 473,262 + +0.7 473,263 - +0.4 473,263 - -0.4 473,266 + -0.0 473,273 + +0.1 473,273 + -0.5 473,273 + +1.0 473,274 - +0.2 473,274 - +0.2 473,274 - -0.0 473,277 + +1.2 473,277 + -0.8 473,342 + -0.3 473,343 - -0.2
Or see this region's nucleotide sequence