Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_01800 and CA264_01805 are separated by 38 nucleotides CA264_01805 and CA264_01810 are separated by 86 nucleotides CA264_01810 and CA264_01815 are separated by 16 nucleotides
CA264_01800: CA264_01800 - gluconate kinase, at 423,737 to 425,260
_01800
CA264_01805: CA264_01805 - 6-phosphogluconate dehydrogenase (decarboxylating), at 425,299 to 426,198
_01805
CA264_01810: CA264_01810 - hypothetical protein, at 426,285 to 426,956
_01810
CA264_01815: CA264_01815 - N-acetyltransferase, at 426,973 to 427,254
_01815
Position (kb) 425
426
427 Strain fitness (log2 ratio) -1
0
1
2
3 at 424.341 kb on + strand, within CA264_01800 at 424.341 kb on + strand, within CA264_01800 at 424.380 kb on - strand, within CA264_01800 at 424.380 kb on - strand, within CA264_01800 at 424.407 kb on - strand, within CA264_01800 at 424.407 kb on - strand, within CA264_01800 at 424.420 kb on + strand, within CA264_01800 at 424.593 kb on - strand, within CA264_01800 at 424.677 kb on - strand, within CA264_01800 at 424.721 kb on + strand, within CA264_01800 at 424.722 kb on - strand, within CA264_01800 at 424.853 kb on + strand, within CA264_01800 at 424.854 kb on - strand, within CA264_01800 at 424.854 kb on - strand, within CA264_01800 at 425.090 kb on + strand, within CA264_01800 at 425.091 kb on - strand, within CA264_01800 at 425.091 kb on - strand, within CA264_01800 at 425.091 kb on - strand, within CA264_01800 at 425.091 kb on - strand, within CA264_01800 at 425.091 kb on - strand, within CA264_01800 at 425.183 kb on + strand at 425.184 kb on - strand at 425.196 kb on - strand at 425.258 kb on + strand at 425.258 kb on + strand at 425.258 kb on + strand at 425.259 kb on - strand at 425.259 kb on - strand at 425.259 kb on - strand at 425.259 kb on - strand at 425.262 kb on + strand at 425.262 kb on + strand at 425.263 kb on - strand at 425.263 kb on - strand at 425.265 kb on - strand at 425.268 kb on + strand at 425.268 kb on - strand at 425.269 kb on - strand at 425.269 kb on - strand at 425.336 kb on - strand at 425.478 kb on + strand, within CA264_01805 at 425.550 kb on - strand, within CA264_01805 at 425.833 kb on + strand, within CA264_01805 at 425.878 kb on - strand, within CA264_01805 at 426.126 kb on + strand at 426.126 kb on + strand at 426.127 kb on - strand at 426.236 kb on + strand at 426.236 kb on + strand at 426.240 kb on + strand at 426.262 kb on + strand at 426.263 kb on - strand at 426.281 kb on + strand at 426.281 kb on + strand at 426.287 kb on - strand at 426.287 kb on - strand at 426.295 kb on + strand at 426.296 kb on - strand at 426.307 kb on - strand at 426.380 kb on + strand, within CA264_01810 at 426.396 kb on + strand, within CA264_01810 at 426.420 kb on + strand, within CA264_01810 at 426.432 kb on - strand, within CA264_01810 at 426.495 kb on + strand, within CA264_01810 at 426.496 kb on - strand, within CA264_01810 at 426.496 kb on - strand, within CA264_01810 at 426.599 kb on - strand, within CA264_01810 at 426.599 kb on - strand, within CA264_01810 at 426.602 kb on - strand, within CA264_01810 at 426.602 kb on - strand, within CA264_01810 at 426.772 kb on - strand, within CA264_01810 at 426.943 kb on - strand at 426.943 kb on - strand at 426.943 kb on - strand at 426.945 kb on - strand at 426.967 kb on - strand at 426.968 kb on + strand at 426.969 kb on - strand at 426.993 kb on - strand at 427.049 kb on + strand, within CA264_01815 at 427.050 kb on - strand, within CA264_01815 at 427.131 kb on - strand, within CA264_01815 at 427.131 kb on - strand, within CA264_01815 at 427.131 kb on - strand, within CA264_01815
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 424,341 + CA264_01800 0.40 -0.6 424,341 + CA264_01800 0.40 -0.6 424,380 - CA264_01800 0.42 +0.7 424,380 - CA264_01800 0.42 -1.2 424,407 - CA264_01800 0.44 +0.1 424,407 - CA264_01800 0.44 +0.1 424,420 + CA264_01800 0.45 +0.2 424,593 - CA264_01800 0.56 +1.0 424,677 - CA264_01800 0.62 -0.3 424,721 + CA264_01800 0.65 +0.2 424,722 - CA264_01800 0.65 -0.8 424,853 + CA264_01800 0.73 +2.3 424,854 - CA264_01800 0.73 -0.2 424,854 - CA264_01800 0.73 -0.8 425,090 + CA264_01800 0.89 +1.2 425,091 - CA264_01800 0.89 -0.6 425,091 - CA264_01800 0.89 -0.9 425,091 - CA264_01800 0.89 -1.1 425,091 - CA264_01800 0.89 -0.4 425,091 - CA264_01800 0.89 -0.2 425,183 + -0.6 425,184 - +0.6 425,196 - -0.2 425,258 + +2.0 425,258 + -0.6 425,258 + -1.0 425,259 - -0.0 425,259 - -1.3 425,259 - -0.0 425,259 - +1.4 425,262 + -0.8 425,262 + +1.4 425,263 - -1.6 425,263 - +0.3 425,265 - +0.4 425,268 + -1.0 425,268 - +0.5 425,269 - +0.4 425,269 - -0.7 425,336 - +0.6 425,478 + CA264_01805 0.20 -0.5 425,550 - CA264_01805 0.28 -0.4 425,833 + CA264_01805 0.59 +0.4 425,878 - CA264_01805 0.64 +0.4 426,126 + -0.3 426,126 + -0.6 426,127 - -0.3 426,236 + -0.9 426,236 + -0.4 426,240 + +0.3 426,262 + -0.7 426,263 - -0.6 426,281 + -0.3 426,281 + -0.4 426,287 - -0.1 426,287 - -0.3 426,295 + +0.3 426,296 - -1.6 426,307 - -0.1 426,380 + CA264_01810 0.14 -1.0 426,396 + CA264_01810 0.17 +2.0 426,420 + CA264_01810 0.20 +1.0 426,432 - CA264_01810 0.22 +1.4 426,495 + CA264_01810 0.31 -0.6 426,496 - CA264_01810 0.31 +0.6 426,496 - CA264_01810 0.31 -1.2 426,599 - CA264_01810 0.47 +0.5 426,599 - CA264_01810 0.47 +2.8 426,602 - CA264_01810 0.47 +0.2 426,602 - CA264_01810 0.47 +2.0 426,772 - CA264_01810 0.72 +2.8 426,943 - -0.2 426,943 - -0.0 426,943 - -0.9 426,945 - +0.5 426,967 - +0.4 426,968 + +0.6 426,969 - -1.3 426,993 - +0.3 427,049 + CA264_01815 0.27 -1.6 427,050 - CA264_01815 0.27 -1.3 427,131 - CA264_01815 0.56 -0.8 427,131 - CA264_01815 0.56 -1.2 427,131 - CA264_01815 0.56 -1.4
Or see this region's nucleotide sequence