Experiment: D-Glucose (C) M9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yebL and znuC are separated by 78 nucleotides znuC and znuB overlap by 4 nucleotides znuB and ruvB are separated by 146 nucleotides
b1857: yebL - putative adhesin (VIMSS), at 1,939,675 to 1,940,607
yebL
b1858: znuC - high-affinity zinc transporter ATPase (NCBI), at 1,940,686 to 1,941,441
znuC
b1859: znuB - high-affinity zinc transporter membrane component (NCBI), at 1,941,438 to 1,942,223
znuB
b1860: ruvB - Holliday junction DNA helicase B (NCBI), at 1,942,370 to 1,943,380
ruvB
Position (kb)
1941
1942
1943 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1940.554 kb on + strand at 1940.831 kb on - strand, within znuC at 1940.831 kb on - strand, within znuC at 1940.844 kb on + strand, within znuC at 1940.964 kb on + strand, within znuC at 1940.970 kb on - strand, within znuC at 1940.970 kb on - strand, within znuC at 1940.972 kb on - strand, within znuC at 1940.972 kb on - strand, within znuC at 1941.053 kb on - strand, within znuC at 1941.053 kb on - strand, within znuC at 1941.081 kb on - strand, within znuC at 1941.195 kb on + strand, within znuC at 1941.208 kb on - strand, within znuC at 1941.228 kb on + strand, within znuC at 1941.385 kb on - strand at 1941.492 kb on - strand at 1941.587 kb on + strand, within znuB at 1941.587 kb on + strand, within znuB at 1941.589 kb on + strand, within znuB at 1941.662 kb on + strand, within znuB at 1941.662 kb on + strand at 1941.704 kb on + strand, within znuB at 1941.712 kb on - strand at 1941.714 kb on + strand, within znuB at 1941.749 kb on + strand, within znuB at 1941.914 kb on + strand, within znuB at 1941.914 kb on + strand, within znuB at 1941.978 kb on + strand, within znuB at 1942.038 kb on + strand, within znuB at 1942.038 kb on + strand, within znuB at 1942.094 kb on + strand, within znuB at 1942.094 kb on + strand, within znuB at 1942.156 kb on - strand at 1942.156 kb on - strand at 1942.184 kb on + strand at 1942.295 kb on + strand at 1942.295 kb on + strand at 1942.423 kb on + strand at 1942.445 kb on - strand at 1942.446 kb on - strand at 1942.806 kb on + strand, within ruvB at 1942.985 kb on + strand, within ruvB
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) M9 remove 1,940,554 + -0.8 1,940,831 - znuC b1858 0.19 -0.9 1,940,831 - znuC b1858 0.19 -2.4 1,940,844 + znuC b1858 0.21 -0.1 1,940,964 + znuC b1858 0.37 -1.6 1,940,970 - znuC b1858 0.38 -2.2 1,940,970 - znuC b1858 0.38 +1.2 1,940,972 - znuC b1858 0.38 -0.9 1,940,972 - znuC b1858 0.38 -0.4 1,941,053 - znuC b1858 0.49 -1.6 1,941,053 - znuC b1858 0.49 +0.4 1,941,081 - znuC b1858 0.52 -0.3 1,941,195 + znuC b1858 0.67 -1.5 1,941,208 - znuC b1858 0.69 +0.4 1,941,228 + znuC b1858 0.72 -1.6 1,941,385 - +0.1 1,941,492 - -0.6 1,941,587 + znuB b1859 0.19 -1.7 1,941,587 + znuB b1859 0.19 -3.0 1,941,589 + znuB b1859 0.19 -1.9 1,941,662 + znuB b1859 0.28 -1.2 1,941,662 + +0.4 1,941,704 + znuB b1859 0.34 +0.4 1,941,712 - +0.4 1,941,714 + znuB b1859 0.35 -1.6 1,941,749 + znuB b1859 0.40 -1.6 1,941,914 + znuB b1859 0.61 -1.0 1,941,914 + znuB b1859 0.61 -0.6 1,941,978 + znuB b1859 0.69 -1.3 1,942,038 + znuB b1859 0.76 -0.6 1,942,038 + znuB b1859 0.76 -1.3 1,942,094 + znuB b1859 0.83 -1.4 1,942,094 + znuB b1859 0.83 +0.4 1,942,156 - -1.6 1,942,156 - -2.2 1,942,184 + +0.4 1,942,295 + +1.1 1,942,295 + +2.0 1,942,423 + -1.6 1,942,445 - -1.2 1,942,446 - -1.9 1,942,806 + ruvB b1860 0.43 -0.9 1,942,985 + ruvB b1860 0.61 -0.6
Or see this region's nucleotide sequence