Experiment: D-Xylose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_3895 and Echvi_3896 overlap by 4 nucleotides Echvi_3897 and Echvi_3898 overlap by 1 nucleotides Echvi_3898 and Echvi_3899 are separated by 170 nucleotides
Echvi_3895: Echvi_3895 - ASPIC and UnbV., at 4,657,268 to 4,660,573
_3895
Echvi_3896: Echvi_3896 - PAP2 superfamily., at 4,660,570 to 4,664,363
_3896
Echvi_3897: Echvi_3897 - hypothetical protein, at 4,661,073 to 4,661,360
_3897
Echvi_3898: Echvi_3898 - Transposase and inactivated derivatives, at 4,661,360 to 4,661,701
_3898
Echvi_3899: Echvi_3899 - Transposase and inactivated derivatives, at 4,661,872 to 4,663,425
_3899
Position (kb) 4661
4662 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4660.391 kb on + strand at 4660.593 kb on + strand at 4660.601 kb on - strand at 4660.610 kb on + strand at 4660.614 kb on + strand at 4660.615 kb on - strand at 4660.615 kb on - strand at 4660.616 kb on - strand at 4660.682 kb on + strand at 4660.682 kb on + strand at 4660.682 kb on + strand at 4660.682 kb on + strand at 4660.682 kb on + strand at 4660.683 kb on - strand at 4660.683 kb on - strand at 4660.683 kb on - strand at 4660.683 kb on - strand at 4660.683 kb on - strand at 4660.689 kb on - strand at 4660.689 kb on - strand at 4660.689 kb on - strand at 4660.767 kb on + strand at 4660.858 kb on + strand at 4660.884 kb on + strand at 4660.885 kb on - strand at 4660.927 kb on - strand at 4660.927 kb on - strand at 4660.943 kb on + strand at 4660.944 kb on - strand at 4661.013 kb on - strand, within Echvi_3896 at 4661.013 kb on - strand, within Echvi_3896 at 4661.015 kb on - strand, within Echvi_3896 at 4661.020 kb on - strand, within Echvi_3896 at 4661.020 kb on - strand, within Echvi_3896
Per-strain Table
Position Strand Gene LocusTag Fraction D-Xylose (C) remove 4,660,391 + -0.4 4,660,593 + +0.1 4,660,601 - +0.1 4,660,610 + -1.4 4,660,614 + -0.6 4,660,615 - -0.3 4,660,615 - -0.3 4,660,616 - +0.1 4,660,682 + +0.8 4,660,682 + +1.0 4,660,682 + -0.8 4,660,682 + -1.9 4,660,682 + +0.3 4,660,683 - -0.4 4,660,683 - -0.1 4,660,683 - +2.5 4,660,683 - -1.2 4,660,683 - +0.6 4,660,689 - -1.4 4,660,689 - +0.4 4,660,689 - -1.1 4,660,767 + -0.2 4,660,858 + +0.4 4,660,884 + -0.9 4,660,885 - +0.1 4,660,927 - -0.5 4,660,927 - -0.6 4,660,943 + +0.2 4,660,944 - +0.2 4,661,013 - Echvi_3896 0.12 +0.1 4,661,013 - Echvi_3896 0.12 +1.7 4,661,015 - Echvi_3896 0.12 -1.1 4,661,020 - Echvi_3896 0.12 +0.6 4,661,020 - Echvi_3896 0.12 -0.1
Or see this region's nucleotide sequence