Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_21520

Experiment: m.b. Dimethyl Sulfoxide 10 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_21515 and CA264_21520 are separated by 39 nucleotidesCA264_21520 and CA264_21525 are separated by 156 nucleotides CA264_21515: CA264_21515 - MATE family efflux transporter, at 173,267 to 174,706 _21515 CA264_21520: CA264_21520 - hypothetical protein, at 174,746 to 175,450 _21520 CA264_21525: CA264_21525 - DUF305 domain-containing protein, at 175,607 to 176,320 _21525 Position (kb) 174 175 176Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 173.756 kb on + strand, within CA264_21515at 173.757 kb on - strand, within CA264_21515at 173.757 kb on - strand, within CA264_21515at 173.771 kb on + strand, within CA264_21515at 173.771 kb on + strand, within CA264_21515at 173.772 kb on - strand, within CA264_21515at 173.795 kb on - strand, within CA264_21515at 173.824 kb on + strand, within CA264_21515at 173.826 kb on + strand, within CA264_21515at 173.827 kb on - strand, within CA264_21515at 173.904 kb on + strand, within CA264_21515at 173.934 kb on - strand, within CA264_21515at 173.962 kb on + strand, within CA264_21515at 174.040 kb on - strand, within CA264_21515at 174.042 kb on + strand, within CA264_21515at 174.136 kb on + strand, within CA264_21515at 174.144 kb on + strand, within CA264_21515at 174.175 kb on + strand, within CA264_21515at 174.176 kb on - strand, within CA264_21515at 174.293 kb on + strand, within CA264_21515at 174.302 kb on + strand, within CA264_21515at 174.303 kb on - strand, within CA264_21515at 174.303 kb on - strand, within CA264_21515at 174.395 kb on - strand, within CA264_21515at 174.395 kb on - strand, within CA264_21515at 174.479 kb on + strand, within CA264_21515at 174.501 kb on + strand, within CA264_21515at 174.502 kb on - strand, within CA264_21515at 174.590 kb on - strandat 174.612 kb on - strandat 174.614 kb on + strandat 174.653 kb on - strandat 174.683 kb on + strandat 174.686 kb on + strandat 174.686 kb on + strandat 174.686 kb on + strandat 174.713 kb on + strandat 174.714 kb on - strandat 174.714 kb on - strandat 174.714 kb on - strandat 174.714 kb on - strandat 174.726 kb on - strandat 174.801 kb on + strandat 174.801 kb on + strandat 174.802 kb on - strandat 174.811 kb on + strandat 174.813 kb on + strandat 174.813 kb on + strandat 174.814 kb on - strandat 174.815 kb on + strandat 174.815 kb on + strandat 174.815 kb on + strandat 174.869 kb on - strand, within CA264_21520at 174.925 kb on - strand, within CA264_21520at 174.935 kb on - strand, within CA264_21520at 174.949 kb on + strand, within CA264_21520at 174.984 kb on - strand, within CA264_21520at 174.998 kb on + strand, within CA264_21520at 174.999 kb on - strand, within CA264_21520at 174.999 kb on - strand, within CA264_21520at 175.104 kb on + strand, within CA264_21520at 175.182 kb on - strand, within CA264_21520at 175.183 kb on + strand, within CA264_21520at 175.184 kb on - strand, within CA264_21520at 175.184 kb on - strand, within CA264_21520at 175.191 kb on + strand, within CA264_21520at 175.300 kb on + strand, within CA264_21520at 175.322 kb on + strand, within CA264_21520at 175.322 kb on + strand, within CA264_21520at 175.384 kb on + strandat 175.384 kb on + strandat 175.385 kb on - strandat 175.385 kb on - strandat 175.385 kb on - strandat 175.420 kb on - strandat 175.420 kb on - strandat 175.441 kb on + strandat 175.450 kb on + strandat 175.467 kb on - strandat 175.469 kb on + strandat 175.470 kb on - strandat 175.470 kb on - strandat 175.471 kb on + strandat 175.471 kb on + strandat 175.471 kb on + strandat 175.471 kb on + strandat 175.471 kb on + strandat 175.540 kb on - strandat 175.583 kb on + strandat 175.609 kb on - strandat 175.668 kb on - strandat 175.691 kb on + strand, within CA264_21525at 175.692 kb on - strand, within CA264_21525at 175.819 kb on + strand, within CA264_21525at 175.820 kb on - strand, within CA264_21525at 175.880 kb on - strand, within CA264_21525at 175.888 kb on + strand, within CA264_21525at 175.919 kb on - strand, within CA264_21525at 175.944 kb on - strand, within CA264_21525at 176.017 kb on - strand, within CA264_21525at 176.042 kb on + strand, within CA264_21525at 176.220 kb on - strand, within CA264_21525at 176.228 kb on - strand, within CA264_21525at 176.328 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 10 vol%
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173,756 + CA264_21515 0.34 +0.7
173,757 - CA264_21515 0.34 -0.3
173,757 - CA264_21515 0.34 -0.1
173,771 + CA264_21515 0.35 -0.4
173,771 + CA264_21515 0.35 -0.2
173,772 - CA264_21515 0.35 +1.7
173,795 - CA264_21515 0.37 -0.8
173,824 + CA264_21515 0.39 +0.1
173,826 + CA264_21515 0.39 +0.7
173,827 - CA264_21515 0.39 -0.5
173,904 + CA264_21515 0.44 +0.7
173,934 - CA264_21515 0.46 -1.9
173,962 + CA264_21515 0.48 -0.3
174,040 - CA264_21515 0.54 -1.2
174,042 + CA264_21515 0.54 -0.3
174,136 + CA264_21515 0.60 -3.5
174,144 + CA264_21515 0.61 -0.3
174,175 + CA264_21515 0.63 +0.3
174,176 - CA264_21515 0.63 +0.1
174,293 + CA264_21515 0.71 -0.5
174,302 + CA264_21515 0.72 +1.5
174,303 - CA264_21515 0.72 -1.5
174,303 - CA264_21515 0.72 -0.3
174,395 - CA264_21515 0.78 -1.3
174,395 - CA264_21515 0.78 +0.1
174,479 + CA264_21515 0.84 +1.0
174,501 + CA264_21515 0.86 -1.3
174,502 - CA264_21515 0.86 -0.3
174,590 - -0.9
174,612 - -0.5
174,614 + -1.3
174,653 - +0.0
174,683 + -0.1
174,686 + -1.3
174,686 + -1.9
174,686 + -0.3
174,713 + +0.1
174,714 - -0.4
174,714 - -0.3
174,714 - -0.3
174,714 - -0.0
174,726 - -1.0
174,801 + -0.1
174,801 + -0.9
174,802 - +2.3
174,811 + -0.0
174,813 + +1.1
174,813 + +2.7
174,814 - +0.7
174,815 + -1.6
174,815 + +0.6
174,815 + +0.0
174,869 - CA264_21520 0.17 +0.7
174,925 - CA264_21520 0.25 +1.4
174,935 - CA264_21520 0.27 -0.3
174,949 + CA264_21520 0.29 -0.6
174,984 - CA264_21520 0.34 +0.1
174,998 + CA264_21520 0.36 +0.0
174,999 - CA264_21520 0.36 +0.4
174,999 - CA264_21520 0.36 -0.9
175,104 + CA264_21520 0.51 +0.1
175,182 - CA264_21520 0.62 +0.6
175,183 + CA264_21520 0.62 +0.2
175,184 - CA264_21520 0.62 -1.6
175,184 - CA264_21520 0.62 +0.7
175,191 + CA264_21520 0.63 -0.2
175,300 + CA264_21520 0.79 +0.1
175,322 + CA264_21520 0.82 +0.2
175,322 + CA264_21520 0.82 +0.0
175,384 + -0.6
175,384 + +0.7
175,385 - +1.2
175,385 - +0.5
175,385 - -0.5
175,420 - -1.1
175,420 - -0.1
175,441 + +0.1
175,450 + +0.3
175,467 - -0.3
175,469 + -0.2
175,470 - +0.3
175,470 - -0.3
175,471 + +0.4
175,471 + -0.1
175,471 + -0.1
175,471 + +0.2
175,471 + +0.5
175,540 - +0.7
175,583 + +0.7
175,609 - -0.7
175,668 - -0.5
175,691 + CA264_21525 0.12 -0.2
175,692 - CA264_21525 0.12 +0.1
175,819 + CA264_21525 0.30 +0.6
175,820 - CA264_21525 0.30 +0.7
175,880 - CA264_21525 0.38 -0.4
175,888 + CA264_21525 0.39 -0.0
175,919 - CA264_21525 0.44 -0.4
175,944 - CA264_21525 0.47 -0.7
176,017 - CA264_21525 0.57 -0.0
176,042 + CA264_21525 0.61 +0.7
176,220 - CA264_21525 0.86 +0.9
176,228 - CA264_21525 0.87 -0.3
176,328 - -0.7

Or see this region's nucleotide sequence