Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_20940

Experiment: m.b. Dimethyl Sulfoxide 10 vol%

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_20930 and CA264_20935 are separated by 9 nucleotidesCA264_20935 and CA264_20940 are separated by 82 nucleotidesCA264_20940 and CA264_20945 are separated by 330 nucleotidesCA264_20945 and CA264_20950 are separated by 82 nucleotides CA264_20930: CA264_20930 - hypothetical protein, at 50,791 to 51,402 _20930 CA264_20935: CA264_20935 - transcriptional regulator, at 51,412 to 51,783 _20935 CA264_20940: CA264_20940 - pyridine nucleotide-disulfide oxidoreductase, at 51,866 to 53,200 _20940 CA264_20945: CA264_20945 - hypothetical protein, at 53,531 to 53,812 _20945 CA264_20950: CA264_20950 - hypothetical protein, at 53,895 to 54,149 _20950 Position (kb) 51 52 53 54Strain fitness (log2 ratio) -2 -1 0 1at 50.880 kb on - strand, within CA264_20930at 50.904 kb on + strand, within CA264_20930at 50.906 kb on + strand, within CA264_20930at 51.151 kb on - strand, within CA264_20930at 51.255 kb on - strand, within CA264_20930at 51.429 kb on + strandat 51.439 kb on - strandat 51.488 kb on + strand, within CA264_20935at 51.633 kb on - strand, within CA264_20935at 51.763 kb on - strandat 51.791 kb on - strandat 51.795 kb on - strandat 51.795 kb on - strandat 51.847 kb on - strandat 51.952 kb on + strandat 52.184 kb on + strand, within CA264_20940at 52.185 kb on - strand, within CA264_20940at 52.258 kb on - strand, within CA264_20940at 52.310 kb on + strand, within CA264_20940at 52.311 kb on - strand, within CA264_20940at 52.311 kb on - strand, within CA264_20940at 52.311 kb on - strand, within CA264_20940at 52.311 kb on - strand, within CA264_20940at 52.311 kb on - strand, within CA264_20940at 52.364 kb on - strand, within CA264_20940at 52.383 kb on - strand, within CA264_20940at 52.385 kb on - strand, within CA264_20940at 52.441 kb on - strand, within CA264_20940at 52.528 kb on - strand, within CA264_20940at 52.528 kb on - strand, within CA264_20940at 52.531 kb on - strand, within CA264_20940at 52.531 kb on - strand, within CA264_20940at 52.621 kb on - strand, within CA264_20940at 52.681 kb on - strand, within CA264_20940at 52.860 kb on - strand, within CA264_20940at 52.900 kb on - strand, within CA264_20940at 53.013 kb on - strand, within CA264_20940at 53.114 kb on - strandat 53.185 kb on - strandat 53.190 kb on - strandat 53.190 kb on - strandat 53.199 kb on - strandat 53.233 kb on - strandat 53.247 kb on - strandat 53.251 kb on - strandat 53.281 kb on - strandat 53.281 kb on - strandat 53.326 kb on - strandat 53.369 kb on - strandat 53.400 kb on - strandat 53.546 kb on - strandat 53.546 kb on - strandat 53.566 kb on - strand, within CA264_20945at 53.633 kb on - strand, within CA264_20945at 53.633 kb on - strand, within CA264_20945at 53.710 kb on - strand, within CA264_20945at 53.845 kb on - strandat 53.845 kb on - strandat 53.868 kb on - strandat 53.903 kb on - strandat 53.903 kb on - strandat 53.916 kb on - strandat 53.995 kb on - strand, within CA264_20950at 54.013 kb on - strand, within CA264_20950at 54.054 kb on - strand, within CA264_20950at 54.057 kb on - strand, within CA264_20950

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 10 vol%
remove
50,880 - CA264_20930 0.15 +0.2
50,904 + CA264_20930 0.18 +0.7
50,906 + CA264_20930 0.19 -1.3
51,151 - CA264_20930 0.59 -1.9
51,255 - CA264_20930 0.76 -0.3
51,429 + -1.0
51,439 - +0.7
51,488 + CA264_20935 0.20 +0.7
51,633 - CA264_20935 0.59 +0.1
51,763 - +0.3
51,791 - +1.1
51,795 - -0.6
51,795 - -0.3
51,847 - -1.8
51,952 + -0.7
52,184 + CA264_20940 0.24 -0.6
52,185 - CA264_20940 0.24 -0.6
52,258 - CA264_20940 0.29 +0.7
52,310 + CA264_20940 0.33 +0.1
52,311 - CA264_20940 0.33 -0.4
52,311 - CA264_20940 0.33 +0.0
52,311 - CA264_20940 0.33 +1.7
52,311 - CA264_20940 0.33 +0.5
52,311 - CA264_20940 0.33 -1.2
52,364 - CA264_20940 0.37 -0.0
52,383 - CA264_20940 0.39 -1.1
52,385 - CA264_20940 0.39 +0.5
52,441 - CA264_20940 0.43 +1.2
52,528 - CA264_20940 0.50 +0.4
52,528 - CA264_20940 0.50 -0.9
52,531 - CA264_20940 0.50 +0.5
52,531 - CA264_20940 0.50 +0.4
52,621 - CA264_20940 0.57 -0.1
52,681 - CA264_20940 0.61 +0.0
52,860 - CA264_20940 0.74 +0.7
52,900 - CA264_20940 0.77 +0.7
53,013 - CA264_20940 0.86 +0.7
53,114 - -1.2
53,185 - +0.2
53,190 - +0.7
53,190 - -0.7
53,199 - +0.2
53,233 - +0.3
53,247 - +0.0
53,251 - +1.0
53,281 - -0.3
53,281 - +0.1
53,326 - +0.3
53,369 - +0.7
53,400 - -0.3
53,546 - +0.5
53,546 - -0.7
53,566 - CA264_20945 0.12 +0.1
53,633 - CA264_20945 0.36 -0.3
53,633 - CA264_20945 0.36 +0.1
53,710 - CA264_20945 0.63 -1.1
53,845 - -0.5
53,845 - +0.3
53,868 - -0.6
53,903 - -0.6
53,903 - +0.2
53,916 - -0.4
53,995 - CA264_20950 0.39 +0.0
54,013 - CA264_20950 0.46 -0.3
54,054 - CA264_20950 0.62 -0.0
54,057 - CA264_20950 0.64 -0.9

Or see this region's nucleotide sequence