Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_19645

Experiment: m.b. Dimethyl Sulfoxide 10 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_19635 and CA264_19640 are separated by 62 nucleotidesCA264_19640 and CA264_19645 are separated by 78 nucleotidesCA264_19645 and CA264_19650 are separated by 205 nucleotides CA264_19635: CA264_19635 - hypothetical protein, at 4,535,331 to 4,536,194 _19635 CA264_19640: CA264_19640 - TraB/GumN family protein, at 4,536,257 to 4,536,982 _19640 CA264_19645: CA264_19645 - IS256 family transposase, at 4,537,061 to 4,538,284 _19645 CA264_19650: CA264_19650 - translation elongation factor Ts, at 4,538,490 to 4,539,323 _19650 Position (kb) 4537 4538 4539Strain fitness (log2 ratio) -2 -1 0 1 2at 4536.202 kb on + strandat 4536.213 kb on - strandat 4536.213 kb on - strandat 4536.247 kb on - strandat 4536.389 kb on - strand, within CA264_19640at 4536.389 kb on - strand, within CA264_19640at 4536.420 kb on + strand, within CA264_19640at 4536.420 kb on + strand, within CA264_19640at 4536.421 kb on - strand, within CA264_19640at 4536.423 kb on + strand, within CA264_19640at 4536.423 kb on + strand, within CA264_19640at 4536.524 kb on - strand, within CA264_19640at 4536.524 kb on - strand, within CA264_19640at 4536.541 kb on - strand, within CA264_19640at 4536.623 kb on - strand, within CA264_19640at 4536.624 kb on + strand, within CA264_19640at 4536.625 kb on - strand, within CA264_19640at 4536.658 kb on - strand, within CA264_19640at 4536.697 kb on + strand, within CA264_19640at 4536.698 kb on - strand, within CA264_19640at 4536.701 kb on - strand, within CA264_19640at 4536.717 kb on + strand, within CA264_19640at 4536.736 kb on - strand, within CA264_19640at 4536.747 kb on - strand, within CA264_19640at 4536.767 kb on + strand, within CA264_19640at 4536.767 kb on + strand, within CA264_19640at 4536.787 kb on - strand, within CA264_19640at 4536.791 kb on - strand, within CA264_19640at 4536.819 kb on + strand, within CA264_19640at 4536.822 kb on + strand, within CA264_19640at 4536.822 kb on + strand, within CA264_19640at 4536.849 kb on + strand, within CA264_19640at 4536.931 kb on - strandat 4536.956 kb on + strandat 4536.959 kb on - strandat 4536.959 kb on - strandat 4536.978 kb on + strandat 4536.980 kb on + strandat 4537.033 kb on + strandat 4537.037 kb on - strandat 4537.039 kb on + strandat 4537.040 kb on - strandat 4537.403 kb on + strand, within CA264_19645at 4537.455 kb on - strand, within CA264_19645at 4537.455 kb on - strand, within CA264_19645at 4537.580 kb on + strand, within CA264_19645at 4537.674 kb on - strand, within CA264_19645at 4537.674 kb on - strand, within CA264_19645at 4537.747 kb on + strand, within CA264_19645at 4537.748 kb on - strand, within CA264_19645at 4537.748 kb on - strand, within CA264_19645at 4537.822 kb on - strand, within CA264_19645at 4537.863 kb on - strand, within CA264_19645at 4537.863 kb on - strand, within CA264_19645at 4538.039 kb on - strand, within CA264_19645at 4538.039 kb on - strand, within CA264_19645at 4538.120 kb on - strand, within CA264_19645at 4538.168 kb on + strandat 4538.332 kb on + strandat 4538.350 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 10 vol%
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4,536,202 + -1.9
4,536,213 - +0.1
4,536,213 - -0.3
4,536,247 - -1.3
4,536,389 - CA264_19640 0.18 +0.7
4,536,389 - CA264_19640 0.18 -0.4
4,536,420 + CA264_19640 0.22 -0.4
4,536,420 + CA264_19640 0.22 +0.4
4,536,421 - CA264_19640 0.23 -0.7
4,536,423 + CA264_19640 0.23 +0.1
4,536,423 + CA264_19640 0.23 -0.1
4,536,524 - CA264_19640 0.37 +0.9
4,536,524 - CA264_19640 0.37 +0.1
4,536,541 - CA264_19640 0.39 -2.0
4,536,623 - CA264_19640 0.50 -1.7
4,536,624 + CA264_19640 0.51 -0.6
4,536,625 - CA264_19640 0.51 +0.7
4,536,658 - CA264_19640 0.55 +0.6
4,536,697 + CA264_19640 0.61 -0.8
4,536,698 - CA264_19640 0.61 -0.1
4,536,701 - CA264_19640 0.61 -0.8
4,536,717 + CA264_19640 0.63 +0.5
4,536,736 - CA264_19640 0.66 +0.0
4,536,747 - CA264_19640 0.67 -0.3
4,536,767 + CA264_19640 0.70 -0.7
4,536,767 + CA264_19640 0.70 -0.1
4,536,787 - CA264_19640 0.73 -0.4
4,536,791 - CA264_19640 0.74 +0.1
4,536,819 + CA264_19640 0.77 +0.6
4,536,822 + CA264_19640 0.78 -0.6
4,536,822 + CA264_19640 0.78 +0.8
4,536,849 + CA264_19640 0.82 +0.1
4,536,931 - -1.1
4,536,956 + -0.6
4,536,959 - +0.1
4,536,959 - +0.3
4,536,978 + -0.4
4,536,980 + +1.1
4,537,033 + -0.7
4,537,037 - -0.3
4,537,039 + +0.1
4,537,040 - +0.7
4,537,403 + CA264_19645 0.28 +0.2
4,537,455 - CA264_19645 0.32 -2.0
4,537,455 - CA264_19645 0.32 -0.5
4,537,580 + CA264_19645 0.42 -0.9
4,537,674 - CA264_19645 0.50 +0.2
4,537,674 - CA264_19645 0.50 -0.3
4,537,747 + CA264_19645 0.56 -0.9
4,537,748 - CA264_19645 0.56 -0.4
4,537,748 - CA264_19645 0.56 -1.3
4,537,822 - CA264_19645 0.62 -1.1
4,537,863 - CA264_19645 0.66 +0.1
4,537,863 - CA264_19645 0.66 -1.3
4,538,039 - CA264_19645 0.80 -1.0
4,538,039 - CA264_19645 0.80 +0.3
4,538,120 - CA264_19645 0.87 +1.7
4,538,168 + +1.1
4,538,332 + +2.7
4,538,350 - -1.2

Or see this region's nucleotide sequence