Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_18405

Experiment: m.b. Dimethyl Sulfoxide 10 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_18395 and CA264_18400 are separated by 8 nucleotidesCA264_18400 and CA264_18405 are separated by 62 nucleotidesCA264_18405 and CA264_18410 are separated by 137 nucleotides CA264_18395: CA264_18395 - TonB-dependent receptor, at 4,277,049 to 4,279,340 _18395 CA264_18400: CA264_18400 - hypothetical protein, at 4,279,349 to 4,280,101 _18400 CA264_18405: CA264_18405 - hypothetical protein, at 4,280,164 to 4,280,796 _18405 CA264_18410: CA264_18410 - glycine dehydrogenase (aminomethyl-transferring), at 4,280,934 to 4,283,852 _18410 Position (kb) 4280 4281Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4279.216 kb on + strandat 4279.217 kb on - strandat 4279.239 kb on + strandat 4279.240 kb on - strandat 4279.240 kb on - strandat 4279.329 kb on + strandat 4279.339 kb on - strandat 4279.358 kb on - strandat 4279.370 kb on - strandat 4279.409 kb on + strandat 4279.501 kb on + strand, within CA264_18400at 4279.527 kb on + strand, within CA264_18400at 4279.593 kb on + strand, within CA264_18400at 4279.594 kb on - strand, within CA264_18400at 4279.664 kb on + strand, within CA264_18400at 4279.664 kb on + strand, within CA264_18400at 4279.665 kb on - strand, within CA264_18400at 4279.671 kb on + strand, within CA264_18400at 4279.679 kb on + strand, within CA264_18400at 4279.697 kb on + strand, within CA264_18400at 4279.698 kb on - strand, within CA264_18400at 4279.748 kb on + strand, within CA264_18400at 4279.798 kb on + strand, within CA264_18400at 4279.799 kb on - strand, within CA264_18400at 4279.840 kb on - strand, within CA264_18400at 4279.852 kb on + strand, within CA264_18400at 4279.853 kb on - strand, within CA264_18400at 4279.853 kb on - strand, within CA264_18400at 4279.866 kb on + strand, within CA264_18400at 4279.866 kb on + strand, within CA264_18400at 4279.934 kb on - strand, within CA264_18400at 4279.934 kb on - strand, within CA264_18400at 4279.935 kb on + strand, within CA264_18400at 4279.946 kb on + strand, within CA264_18400at 4279.957 kb on + strand, within CA264_18400at 4279.977 kb on + strand, within CA264_18400at 4279.985 kb on + strand, within CA264_18400at 4279.987 kb on + strand, within CA264_18400at 4279.987 kb on + strand, within CA264_18400at 4279.987 kb on + strand, within CA264_18400at 4279.988 kb on - strand, within CA264_18400at 4279.988 kb on - strand, within CA264_18400at 4279.999 kb on - strand, within CA264_18400at 4279.999 kb on - strand, within CA264_18400at 4280.026 kb on + strandat 4280.064 kb on - strandat 4280.076 kb on + strandat 4280.077 kb on - strandat 4280.077 kb on - strandat 4280.153 kb on + strandat 4280.154 kb on - strandat 4280.154 kb on - strandat 4280.156 kb on + strandat 4280.157 kb on - strandat 4280.341 kb on + strand, within CA264_18405at 4280.378 kb on + strand, within CA264_18405at 4280.378 kb on + strand, within CA264_18405at 4280.378 kb on + strand, within CA264_18405at 4280.378 kb on + strand, within CA264_18405at 4280.384 kb on + strand, within CA264_18405at 4280.402 kb on + strand, within CA264_18405at 4280.438 kb on + strand, within CA264_18405at 4280.438 kb on + strand, within CA264_18405at 4280.438 kb on + strand, within CA264_18405at 4280.439 kb on - strand, within CA264_18405at 4280.481 kb on - strand, within CA264_18405at 4280.561 kb on + strand, within CA264_18405at 4280.740 kb on + strandat 4280.742 kb on + strandat 4280.742 kb on + strandat 4280.742 kb on + strandat 4280.743 kb on - strandat 4280.743 kb on - strandat 4280.743 kb on - strandat 4280.743 kb on - strandat 4280.798 kb on + strandat 4280.799 kb on - strandat 4280.799 kb on - strandat 4280.800 kb on + strandat 4280.800 kb on + strandat 4280.800 kb on + strandat 4280.800 kb on + strandat 4280.800 kb on + strandat 4280.800 kb on + strandat 4280.800 kb on + strandat 4280.801 kb on - strandat 4280.801 kb on - strandat 4280.801 kb on - strandat 4280.806 kb on + strandat 4280.806 kb on + strandat 4280.806 kb on + strandat 4280.807 kb on - strandat 4280.807 kb on - strandat 4280.807 kb on - strandat 4280.807 kb on - strandat 4280.857 kb on - strandat 4280.915 kb on + strandat 4280.916 kb on - strandat 4280.940 kb on + strandat 4280.940 kb on + strandat 4280.941 kb on - strandat 4280.971 kb on + strandat 4280.972 kb on - strandat 4281.328 kb on + strand, within CA264_18410

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 10 vol%
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4,279,216 + -0.7
4,279,217 - +0.3
4,279,239 + +1.0
4,279,240 - -0.1
4,279,240 - -0.9
4,279,329 + -0.8
4,279,339 - -0.2
4,279,358 - +1.4
4,279,370 - -1.0
4,279,409 + -0.6
4,279,501 + CA264_18400 0.20 -0.6
4,279,527 + CA264_18400 0.24 -0.1
4,279,593 + CA264_18400 0.32 -0.1
4,279,594 - CA264_18400 0.33 -1.2
4,279,664 + CA264_18400 0.42 -0.2
4,279,664 + CA264_18400 0.42 -0.4
4,279,665 - CA264_18400 0.42 -1.2
4,279,671 + CA264_18400 0.43 +0.6
4,279,679 + CA264_18400 0.44 -0.5
4,279,697 + CA264_18400 0.46 -0.1
4,279,698 - CA264_18400 0.46 +0.2
4,279,748 + CA264_18400 0.53 +1.2
4,279,798 + CA264_18400 0.60 +0.5
4,279,799 - CA264_18400 0.60 -0.1
4,279,840 - CA264_18400 0.65 -0.8
4,279,852 + CA264_18400 0.67 -0.8
4,279,853 - CA264_18400 0.67 -0.3
4,279,853 - CA264_18400 0.67 -0.4
4,279,866 + CA264_18400 0.69 -0.0
4,279,866 + CA264_18400 0.69 -1.4
4,279,934 - CA264_18400 0.78 +0.0
4,279,934 - CA264_18400 0.78 -0.8
4,279,935 + CA264_18400 0.78 -0.4
4,279,946 + CA264_18400 0.79 +0.8
4,279,957 + CA264_18400 0.81 -0.2
4,279,977 + CA264_18400 0.83 -0.2
4,279,985 + CA264_18400 0.84 -2.7
4,279,987 + CA264_18400 0.85 -0.4
4,279,987 + CA264_18400 0.85 -0.4
4,279,987 + CA264_18400 0.85 +0.7
4,279,988 - CA264_18400 0.85 -0.3
4,279,988 - CA264_18400 0.85 +0.6
4,279,999 - CA264_18400 0.86 -0.6
4,279,999 - CA264_18400 0.86 -0.0
4,280,026 + +0.2
4,280,064 - +0.1
4,280,076 + -0.1
4,280,077 - +1.2
4,280,077 - -0.6
4,280,153 + -0.1
4,280,154 - -0.4
4,280,154 - -0.1
4,280,156 + +0.3
4,280,157 - -1.1
4,280,341 + CA264_18405 0.28 +0.4
4,280,378 + CA264_18405 0.34 -0.8
4,280,378 + CA264_18405 0.34 +0.4
4,280,378 + CA264_18405 0.34 +0.1
4,280,378 + CA264_18405 0.34 +0.0
4,280,384 + CA264_18405 0.35 -0.7
4,280,402 + CA264_18405 0.38 -0.0
4,280,438 + CA264_18405 0.43 +0.8
4,280,438 + CA264_18405 0.43 +0.6
4,280,438 + CA264_18405 0.43 -0.4
4,280,439 - CA264_18405 0.43 -0.3
4,280,481 - CA264_18405 0.50 +0.2
4,280,561 + CA264_18405 0.63 +0.4
4,280,740 + -0.0
4,280,742 + -0.1
4,280,742 + -0.2
4,280,742 + -0.6
4,280,743 - -0.8
4,280,743 - +0.5
4,280,743 - +1.1
4,280,743 - +1.0
4,280,798 + -1.5
4,280,799 - -0.1
4,280,799 - -1.4
4,280,800 + +0.0
4,280,800 + -0.2
4,280,800 + -0.0
4,280,800 + +0.5
4,280,800 + -0.7
4,280,800 + +0.1
4,280,800 + -0.4
4,280,801 - +0.5
4,280,801 - +0.1
4,280,801 - +0.4
4,280,806 + +0.6
4,280,806 + +0.1
4,280,806 + +0.0
4,280,807 - -0.3
4,280,807 - +0.2
4,280,807 - +0.2
4,280,807 - +2.8
4,280,857 - -0.7
4,280,915 + +0.2
4,280,916 - +0.6
4,280,940 + -1.2
4,280,940 + -0.5
4,280,941 - -0.6
4,280,971 + -0.1
4,280,972 - -1.5
4,281,328 + CA264_18410 0.13 -1.4

Or see this region's nucleotide sequence