Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_16400

Experiment: m.b. Dimethyl Sulfoxide 10 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_16390 and CA264_16395 overlap by 17 nucleotidesCA264_16395 and CA264_16400 are separated by 1 nucleotidesCA264_16400 and CA264_16405 are separated by 56 nucleotidesCA264_16405 and CA264_16410 are separated by 132 nucleotides CA264_16390: CA264_16390 - hypothetical protein, at 3,814,406 to 3,814,798 _16390 CA264_16395: CA264_16395 - lipoyl(octanoyl) transferase, at 3,814,782 to 3,815,516 _16395 CA264_16400: CA264_16400 - bifunctional phosphoglucose/phosphomannose isomerase, at 3,815,518 to 3,816,513 _16400 CA264_16405: CA264_16405 - YraN family protein, at 3,816,570 to 3,816,932 _16405 CA264_16410: CA264_16410 - hypothetical protein, at 3,817,065 to 3,817,976 _16410 Position (kb) 3815 3816 3817Strain fitness (log2 ratio) -3 -2 -1 0 1at 3814.518 kb on + strand, within CA264_16390at 3814.519 kb on - strand, within CA264_16390at 3814.521 kb on + strand, within CA264_16390at 3814.522 kb on - strand, within CA264_16390at 3814.522 kb on - strand, within CA264_16390at 3814.717 kb on - strand, within CA264_16390at 3814.717 kb on - strand, within CA264_16390at 3814.787 kb on - strandat 3814.812 kb on - strandat 3814.814 kb on + strandat 3815.522 kb on - strandat 3815.554 kb on - strandat 3815.584 kb on + strandat 3815.585 kb on - strandat 3815.764 kb on - strand, within CA264_16400at 3815.764 kb on - strand, within CA264_16400at 3815.980 kb on + strand, within CA264_16400at 3816.060 kb on - strand, within CA264_16400at 3816.071 kb on + strand, within CA264_16400at 3816.134 kb on - strand, within CA264_16400at 3816.192 kb on + strand, within CA264_16400at 3816.192 kb on + strand, within CA264_16400at 3816.286 kb on - strand, within CA264_16400at 3816.286 kb on - strand, within CA264_16400at 3816.286 kb on - strand, within CA264_16400at 3816.344 kb on - strand, within CA264_16400at 3816.359 kb on + strand, within CA264_16400at 3816.360 kb on - strand, within CA264_16400at 3816.413 kb on - strand, within CA264_16400at 3816.441 kb on + strandat 3816.513 kb on + strandat 3816.513 kb on + strandat 3816.514 kb on - strandat 3816.516 kb on + strandat 3816.517 kb on - strandat 3816.517 kb on - strandat 3816.530 kb on - strandat 3816.544 kb on - strandat 3816.567 kb on + strandat 3816.633 kb on + strand, within CA264_16405at 3816.633 kb on + strand, within CA264_16405at 3816.653 kb on + strand, within CA264_16405at 3816.653 kb on + strand, within CA264_16405at 3816.654 kb on - strand, within CA264_16405at 3816.672 kb on + strand, within CA264_16405at 3816.680 kb on + strand, within CA264_16405at 3816.681 kb on - strand, within CA264_16405at 3816.716 kb on + strand, within CA264_16405at 3816.717 kb on - strand, within CA264_16405at 3816.758 kb on + strand, within CA264_16405at 3816.759 kb on - strand, within CA264_16405at 3816.762 kb on + strand, within CA264_16405at 3816.762 kb on + strand, within CA264_16405at 3816.763 kb on - strand, within CA264_16405at 3816.763 kb on - strand, within CA264_16405at 3816.763 kb on - strand, within CA264_16405at 3816.828 kb on + strand, within CA264_16405at 3816.905 kb on - strandat 3816.905 kb on - strandat 3816.913 kb on + strandat 3816.913 kb on + strandat 3816.914 kb on - strandat 3816.930 kb on + strandat 3816.938 kb on - strandat 3817.018 kb on + strandat 3817.018 kb on + strandat 3817.019 kb on - strandat 3817.019 kb on - strandat 3817.022 kb on - strandat 3817.059 kb on - strandat 3817.066 kb on + strandat 3817.112 kb on - strandat 3817.171 kb on + strand, within CA264_16410at 3817.223 kb on - strand, within CA264_16410at 3817.225 kb on + strand, within CA264_16410at 3817.225 kb on + strand, within CA264_16410at 3817.226 kb on - strand, within CA264_16410at 3817.226 kb on - strand, within CA264_16410at 3817.226 kb on - strand, within CA264_16410at 3817.226 kb on - strand, within CA264_16410at 3817.261 kb on + strand, within CA264_16410at 3817.294 kb on + strand, within CA264_16410at 3817.303 kb on + strand, within CA264_16410at 3817.307 kb on - strand, within CA264_16410at 3817.307 kb on - strand, within CA264_16410at 3817.351 kb on - strand, within CA264_16410at 3817.372 kb on + strand, within CA264_16410at 3817.372 kb on + strand, within CA264_16410at 3817.372 kb on + strand, within CA264_16410at 3817.372 kb on + strand, within CA264_16410at 3817.450 kb on + strand, within CA264_16410

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 10 vol%
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3,814,518 + CA264_16390 0.28 +0.4
3,814,519 - CA264_16390 0.29 -0.8
3,814,521 + CA264_16390 0.29 +0.0
3,814,522 - CA264_16390 0.30 -0.1
3,814,522 - CA264_16390 0.30 -0.5
3,814,717 - CA264_16390 0.79 -1.0
3,814,717 - CA264_16390 0.79 -0.3
3,814,787 - -0.0
3,814,812 - +0.0
3,814,814 + -1.9
3,815,522 - -0.7
3,815,554 - -0.1
3,815,584 + -0.6
3,815,585 - +1.2
3,815,764 - CA264_16400 0.25 +0.6
3,815,764 - CA264_16400 0.25 +0.8
3,815,980 + CA264_16400 0.46 +0.7
3,816,060 - CA264_16400 0.54 +0.1
3,816,071 + CA264_16400 0.56 -0.2
3,816,134 - CA264_16400 0.62 +0.4
3,816,192 + CA264_16400 0.68 -1.2
3,816,192 + CA264_16400 0.68 +0.6
3,816,286 - CA264_16400 0.77 +0.2
3,816,286 - CA264_16400 0.77 +0.1
3,816,286 - CA264_16400 0.77 +1.4
3,816,344 - CA264_16400 0.83 -0.2
3,816,359 + CA264_16400 0.84 -0.4
3,816,360 - CA264_16400 0.85 -1.6
3,816,413 - CA264_16400 0.90 +0.3
3,816,441 + +1.2
3,816,513 + -0.3
3,816,513 + -0.5
3,816,514 - +0.2
3,816,516 + -0.1
3,816,517 - +0.0
3,816,517 - +0.5
3,816,530 - +0.0
3,816,544 - -2.3
3,816,567 + +0.5
3,816,633 + CA264_16405 0.17 -1.2
3,816,633 + CA264_16405 0.17 -0.8
3,816,653 + CA264_16405 0.23 -0.2
3,816,653 + CA264_16405 0.23 -0.9
3,816,654 - CA264_16405 0.23 -0.2
3,816,672 + CA264_16405 0.28 +0.1
3,816,680 + CA264_16405 0.30 +0.6
3,816,681 - CA264_16405 0.31 +0.3
3,816,716 + CA264_16405 0.40 +0.2
3,816,717 - CA264_16405 0.40 +1.2
3,816,758 + CA264_16405 0.52 +0.8
3,816,759 - CA264_16405 0.52 -0.6
3,816,762 + CA264_16405 0.53 -0.2
3,816,762 + CA264_16405 0.53 -3.0
3,816,763 - CA264_16405 0.53 -0.4
3,816,763 - CA264_16405 0.53 -0.4
3,816,763 - CA264_16405 0.53 +0.1
3,816,828 + CA264_16405 0.71 +0.7
3,816,905 - -0.6
3,816,905 - -0.6
3,816,913 + +0.2
3,816,913 + -0.3
3,816,914 - +0.8
3,816,930 + +1.0
3,816,938 - +0.2
3,817,018 + -0.2
3,817,018 + +0.1
3,817,019 - -0.0
3,817,019 - -1.0
3,817,022 - +1.5
3,817,059 - -0.0
3,817,066 + +1.5
3,817,112 - -1.0
3,817,171 + CA264_16410 0.12 +0.3
3,817,223 - CA264_16410 0.17 -1.1
3,817,225 + CA264_16410 0.18 +0.2
3,817,225 + CA264_16410 0.18 +0.1
3,817,226 - CA264_16410 0.18 +0.3
3,817,226 - CA264_16410 0.18 -0.2
3,817,226 - CA264_16410 0.18 -0.6
3,817,226 - CA264_16410 0.18 +0.9
3,817,261 + CA264_16410 0.21 -0.2
3,817,294 + CA264_16410 0.25 -0.2
3,817,303 + CA264_16410 0.26 -0.1
3,817,307 - CA264_16410 0.27 +0.3
3,817,307 - CA264_16410 0.27 +0.3
3,817,351 - CA264_16410 0.31 +0.6
3,817,372 + CA264_16410 0.34 +1.5
3,817,372 + CA264_16410 0.34 -1.3
3,817,372 + CA264_16410 0.34 -1.0
3,817,372 + CA264_16410 0.34 +0.3
3,817,450 + CA264_16410 0.42 -0.3

Or see this region's nucleotide sequence