Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_15720

Experiment: m.b. Dimethyl Sulfoxide 10 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_15715 and CA264_15720 are separated by 201 nucleotidesCA264_15720 and CA264_15725 are separated by 45 nucleotides CA264_15715: CA264_15715 - GTPase HflX, at 3,668,209 to 3,669,396 _15715 CA264_15720: CA264_15720 - phosphohistidine phosphatase, at 3,669,598 to 3,670,092 _15720 CA264_15725: CA264_15725 - polyphosphate kinase 1, at 3,670,138 to 3,672,252 _15725 Position (kb) 3669 3670 3671Strain fitness (log2 ratio) -1 0 1at 3668.661 kb on - strand, within CA264_15715at 3668.661 kb on - strand, within CA264_15715at 3668.839 kb on + strand, within CA264_15715at 3668.842 kb on - strand, within CA264_15715at 3668.945 kb on + strand, within CA264_15715at 3668.945 kb on + strand, within CA264_15715at 3669.024 kb on + strand, within CA264_15715at 3669.024 kb on + strand, within CA264_15715at 3669.045 kb on - strand, within CA264_15715at 3669.138 kb on + strand, within CA264_15715at 3669.179 kb on + strand, within CA264_15715at 3669.265 kb on + strand, within CA264_15715at 3669.266 kb on - strand, within CA264_15715at 3669.267 kb on + strand, within CA264_15715at 3669.298 kb on - strandat 3669.298 kb on - strandat 3669.395 kb on - strandat 3669.507 kb on + strandat 3669.539 kb on - strandat 3669.539 kb on - strandat 3669.588 kb on + strandat 3669.610 kb on + strandat 3669.611 kb on - strandat 3669.617 kb on + strandat 3669.618 kb on - strandat 3669.811 kb on + strand, within CA264_15720at 3669.903 kb on - strand, within CA264_15720at 3670.031 kb on - strand, within CA264_15720at 3670.031 kb on - strand, within CA264_15720at 3670.067 kb on - strandat 3670.131 kb on + strandat 3670.164 kb on + strandat 3670.164 kb on + strandat 3670.165 kb on - strandat 3670.216 kb on + strandat 3670.216 kb on + strandat 3670.218 kb on + strandat 3670.218 kb on + strandat 3670.218 kb on + strandat 3670.219 kb on - strandat 3670.224 kb on - strandat 3670.224 kb on - strandat 3670.546 kb on + strand, within CA264_15725at 3670.546 kb on + strand, within CA264_15725at 3670.546 kb on + strand, within CA264_15725at 3670.547 kb on - strand, within CA264_15725at 3670.733 kb on + strand, within CA264_15725at 3670.819 kb on + strand, within CA264_15725at 3670.819 kb on + strand, within CA264_15725at 3670.820 kb on - strand, within CA264_15725at 3670.824 kb on + strand, within CA264_15725at 3670.825 kb on - strand, within CA264_15725at 3670.825 kb on - strand, within CA264_15725at 3670.825 kb on - strand, within CA264_15725

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 10 vol%
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3,668,661 - CA264_15715 0.38 +1.1
3,668,661 - CA264_15715 0.38 -0.1
3,668,839 + CA264_15715 0.53 -0.9
3,668,842 - CA264_15715 0.53 +0.7
3,668,945 + CA264_15715 0.62 -1.2
3,668,945 + CA264_15715 0.62 -0.1
3,669,024 + CA264_15715 0.69 -0.9
3,669,024 + CA264_15715 0.69 +0.7
3,669,045 - CA264_15715 0.70 -0.7
3,669,138 + CA264_15715 0.78 -1.0
3,669,179 + CA264_15715 0.82 -1.1
3,669,265 + CA264_15715 0.89 -1.4
3,669,266 - CA264_15715 0.89 -0.4
3,669,267 + CA264_15715 0.89 +0.9
3,669,298 - +0.1
3,669,298 - -0.8
3,669,395 - +0.3
3,669,507 + -0.6
3,669,539 - +0.1
3,669,539 - +1.1
3,669,588 + +0.7
3,669,610 + -0.7
3,669,611 - +0.1
3,669,617 + +0.1
3,669,618 - +0.4
3,669,811 + CA264_15720 0.43 -1.0
3,669,903 - CA264_15720 0.62 -0.3
3,670,031 - CA264_15720 0.87 -1.2
3,670,031 - CA264_15720 0.87 +1.6
3,670,067 - -0.6
3,670,131 + -0.2
3,670,164 + -0.3
3,670,164 + -0.3
3,670,165 - -0.3
3,670,216 + -1.0
3,670,216 + -0.9
3,670,218 + -0.6
3,670,218 + +0.1
3,670,218 + -0.1
3,670,219 - -0.8
3,670,224 - -0.2
3,670,224 - -0.6
3,670,546 + CA264_15725 0.19 -0.1
3,670,546 + CA264_15725 0.19 +0.1
3,670,546 + CA264_15725 0.19 +1.1
3,670,547 - CA264_15725 0.19 -0.1
3,670,733 + CA264_15725 0.28 -0.2
3,670,819 + CA264_15725 0.32 +0.8
3,670,819 + CA264_15725 0.32 +0.4
3,670,820 - CA264_15725 0.32 +0.2
3,670,824 + CA264_15725 0.32 +0.9
3,670,825 - CA264_15725 0.32 -0.6
3,670,825 - CA264_15725 0.32 -1.0
3,670,825 - CA264_15725 0.32 -0.5

Or see this region's nucleotide sequence