Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_15120

Experiment: m.b. Dimethyl Sulfoxide 10 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_15105 and CA264_15110 are separated by 232 nucleotidesCA264_15110 and CA264_15115 are separated by 184 nucleotidesCA264_15115 and CA264_15120 are separated by 68 nucleotidesCA264_15120 and CA264_15125 are separated by 63 nucleotides CA264_15105: CA264_15105 - hypothetical protein, at 3,544,493 to 3,544,726 _15105 CA264_15110: CA264_15110 - hypothetical protein, at 3,544,959 to 3,545,150 _15110 CA264_15115: CA264_15115 - hypothetical protein, at 3,545,335 to 3,545,532 _15115 CA264_15120: CA264_15120 - ribosome biogenesis GTPase Der, at 3,545,601 to 3,546,914 _15120 CA264_15125: CA264_15125 - GTPase Era, at 3,546,978 to 3,547,868 _15125 Position (kb) 3545 3546 3547Strain fitness (log2 ratio) -2 -1 0 1 2at 3544.616 kb on + strand, within CA264_15105at 3544.616 kb on + strand, within CA264_15105at 3544.704 kb on - strandat 3544.704 kb on - strandat 3544.708 kb on + strandat 3544.716 kb on - strandat 3544.726 kb on + strandat 3544.961 kb on - strandat 3545.050 kb on - strand, within CA264_15110at 3545.139 kb on + strandat 3545.139 kb on + strandat 3545.140 kb on - strandat 3545.140 kb on - strandat 3545.140 kb on - strandat 3545.164 kb on + strandat 3545.241 kb on + strandat 3545.259 kb on + strandat 3545.324 kb on - strandat 3545.405 kb on - strand, within CA264_15115at 3545.563 kb on - strandat 3545.573 kb on - strandat 3545.599 kb on - strandat 3545.599 kb on - strandat 3545.599 kb on - strandat 3545.599 kb on - strandat 3546.935 kb on + strandat 3546.969 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 10 vol%
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3,544,616 + CA264_15105 0.53 +0.6
3,544,616 + CA264_15105 0.53 +0.1
3,544,704 - +0.4
3,544,704 - -2.2
3,544,708 + -0.6
3,544,716 - +0.8
3,544,726 + +0.3
3,544,961 - -0.1
3,545,050 - CA264_15110 0.47 +1.1
3,545,139 + -0.9
3,545,139 + -0.6
3,545,140 - +0.0
3,545,140 - +0.6
3,545,140 - -0.3
3,545,164 + +1.4
3,545,241 + +0.0
3,545,259 + -0.4
3,545,324 - -0.9
3,545,405 - CA264_15115 0.35 +0.3
3,545,563 - -0.5
3,545,573 - +0.0
3,545,599 - -0.4
3,545,599 - +2.1
3,545,599 - -0.6
3,545,599 - -0.5
3,546,935 + +0.1
3,546,969 + +0.1

Or see this region's nucleotide sequence