Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_14840

Experiment: m.b. Dimethyl Sulfoxide 10 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_14835 and CA264_14840 are separated by 6 nucleotidesCA264_14840 and CA264_14845 are separated by 183 nucleotides CA264_14835: CA264_14835 - hypothetical protein, at 3,484,115 to 3,485,194 _14835 CA264_14840: CA264_14840 - hypothetical protein, at 3,485,201 to 3,486,928 _14840 CA264_14845: CA264_14845 - magnesium chelatase, at 3,487,112 to 3,488,005 _14845 Position (kb) 3485 3486 3487Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3484.205 kb on + strandat 3484.206 kb on - strandat 3484.233 kb on - strand, within CA264_14835at 3484.305 kb on + strand, within CA264_14835at 3484.313 kb on + strand, within CA264_14835at 3484.391 kb on - strand, within CA264_14835at 3484.447 kb on - strand, within CA264_14835at 3484.506 kb on + strand, within CA264_14835at 3484.541 kb on - strand, within CA264_14835at 3484.541 kb on - strand, within CA264_14835at 3484.629 kb on + strand, within CA264_14835at 3484.684 kb on - strand, within CA264_14835at 3484.695 kb on + strand, within CA264_14835at 3484.718 kb on - strand, within CA264_14835at 3484.718 kb on - strand, within CA264_14835at 3484.720 kb on - strand, within CA264_14835at 3484.720 kb on - strand, within CA264_14835at 3484.720 kb on - strand, within CA264_14835at 3484.720 kb on - strand, within CA264_14835at 3484.750 kb on + strand, within CA264_14835at 3484.750 kb on + strand, within CA264_14835at 3484.750 kb on + strand, within CA264_14835at 3484.750 kb on + strand, within CA264_14835at 3484.750 kb on + strand, within CA264_14835at 3484.750 kb on + strand, within CA264_14835at 3484.750 kb on + strand, within CA264_14835at 3484.751 kb on - strand, within CA264_14835at 3484.751 kb on - strand, within CA264_14835at 3484.751 kb on - strand, within CA264_14835at 3484.751 kb on - strand, within CA264_14835at 3484.751 kb on - strand, within CA264_14835at 3484.751 kb on - strand, within CA264_14835at 3484.751 kb on - strand, within CA264_14835at 3484.752 kb on + strand, within CA264_14835at 3484.752 kb on + strand, within CA264_14835at 3484.752 kb on + strand, within CA264_14835at 3484.781 kb on + strand, within CA264_14835at 3484.784 kb on - strand, within CA264_14835at 3484.784 kb on - strand, within CA264_14835at 3484.802 kb on - strand, within CA264_14835at 3484.842 kb on + strand, within CA264_14835at 3484.842 kb on + strand, within CA264_14835at 3484.852 kb on + strand, within CA264_14835at 3484.853 kb on - strand, within CA264_14835at 3484.855 kb on - strand, within CA264_14835at 3484.934 kb on - strand, within CA264_14835at 3484.987 kb on - strand, within CA264_14835at 3484.997 kb on - strand, within CA264_14835at 3485.002 kb on - strand, within CA264_14835at 3485.040 kb on + strand, within CA264_14835at 3485.041 kb on - strand, within CA264_14835at 3485.152 kb on + strandat 3485.153 kb on - strandat 3485.156 kb on + strandat 3485.156 kb on + strandat 3485.157 kb on - strandat 3485.180 kb on + strandat 3485.183 kb on - strandat 3485.195 kb on + strandat 3485.196 kb on - strandat 3485.221 kb on + strandat 3485.221 kb on + strandat 3485.222 kb on - strandat 3485.328 kb on + strandat 3485.328 kb on + strandat 3485.329 kb on - strandat 3485.332 kb on - strandat 3485.360 kb on - strandat 3485.360 kb on - strandat 3485.360 kb on - strandat 3485.360 kb on - strandat 3485.477 kb on - strand, within CA264_14840at 3485.484 kb on + strand, within CA264_14840at 3485.534 kb on - strand, within CA264_14840at 3485.534 kb on - strand, within CA264_14840at 3485.564 kb on + strand, within CA264_14840at 3485.565 kb on - strand, within CA264_14840at 3485.598 kb on + strand, within CA264_14840at 3485.615 kb on + strand, within CA264_14840at 3485.615 kb on + strand, within CA264_14840at 3485.615 kb on + strand, within CA264_14840at 3485.616 kb on - strand, within CA264_14840at 3485.616 kb on - strand, within CA264_14840at 3485.617 kb on + strand, within CA264_14840at 3485.617 kb on + strand, within CA264_14840at 3485.618 kb on - strand, within CA264_14840at 3485.618 kb on - strand, within CA264_14840at 3485.639 kb on - strand, within CA264_14840at 3485.652 kb on - strand, within CA264_14840at 3485.652 kb on - strand, within CA264_14840at 3485.654 kb on + strand, within CA264_14840at 3485.654 kb on + strand, within CA264_14840at 3485.654 kb on + strand, within CA264_14840at 3485.654 kb on + strand, within CA264_14840at 3485.654 kb on + strand, within CA264_14840at 3485.654 kb on + strand, within CA264_14840at 3485.655 kb on - strand, within CA264_14840at 3485.655 kb on - strand, within CA264_14840at 3485.682 kb on - strand, within CA264_14840at 3485.683 kb on + strand, within CA264_14840at 3485.747 kb on + strand, within CA264_14840at 3485.757 kb on + strand, within CA264_14840at 3485.761 kb on - strand, within CA264_14840at 3485.761 kb on - strand, within CA264_14840at 3485.867 kb on - strand, within CA264_14840at 3485.903 kb on - strand, within CA264_14840at 3485.916 kb on - strand, within CA264_14840at 3485.916 kb on - strand, within CA264_14840at 3485.916 kb on - strand, within CA264_14840at 3485.935 kb on + strand, within CA264_14840at 3485.954 kb on - strand, within CA264_14840at 3485.970 kb on - strand, within CA264_14840at 3485.970 kb on - strand, within CA264_14840at 3485.973 kb on + strand, within CA264_14840at 3485.991 kb on + strand, within CA264_14840at 3486.010 kb on + strand, within CA264_14840at 3486.010 kb on + strand, within CA264_14840at 3486.010 kb on + strand, within CA264_14840at 3486.021 kb on + strand, within CA264_14840at 3486.042 kb on + strand, within CA264_14840at 3486.042 kb on + strand, within CA264_14840at 3486.042 kb on + strand, within CA264_14840at 3486.043 kb on - strand, within CA264_14840at 3486.046 kb on + strand, within CA264_14840at 3486.046 kb on + strand, within CA264_14840at 3486.046 kb on + strand, within CA264_14840at 3486.046 kb on + strand, within CA264_14840at 3486.076 kb on + strand, within CA264_14840at 3486.083 kb on - strand, within CA264_14840at 3486.094 kb on - strand, within CA264_14840at 3486.098 kb on - strand, within CA264_14840at 3486.112 kb on + strand, within CA264_14840at 3486.116 kb on + strand, within CA264_14840at 3486.116 kb on + strand, within CA264_14840at 3486.117 kb on - strand, within CA264_14840at 3486.117 kb on - strand, within CA264_14840at 3486.127 kb on - strand, within CA264_14840at 3486.148 kb on + strand, within CA264_14840at 3486.156 kb on + strand, within CA264_14840at 3486.157 kb on - strand, within CA264_14840at 3486.195 kb on + strand, within CA264_14840at 3486.205 kb on + strand, within CA264_14840at 3486.217 kb on - strand, within CA264_14840at 3486.223 kb on + strand, within CA264_14840at 3486.230 kb on - strand, within CA264_14840at 3486.271 kb on - strand, within CA264_14840at 3486.274 kb on + strand, within CA264_14840at 3486.274 kb on + strand, within CA264_14840at 3486.278 kb on + strand, within CA264_14840at 3486.278 kb on + strand, within CA264_14840at 3486.278 kb on + strand, within CA264_14840at 3486.319 kb on + strand, within CA264_14840at 3486.319 kb on + strand, within CA264_14840at 3486.352 kb on - strand, within CA264_14840at 3486.355 kb on + strand, within CA264_14840at 3486.360 kb on + strand, within CA264_14840at 3486.402 kb on + strand, within CA264_14840at 3486.432 kb on + strand, within CA264_14840at 3486.433 kb on - strand, within CA264_14840at 3486.433 kb on - strand, within CA264_14840at 3486.433 kb on - strand, within CA264_14840at 3486.433 kb on - strand, within CA264_14840at 3486.433 kb on - strand, within CA264_14840at 3486.433 kb on - strand, within CA264_14840at 3486.456 kb on - strand, within CA264_14840at 3486.470 kb on + strand, within CA264_14840at 3486.520 kb on + strand, within CA264_14840at 3486.520 kb on + strand, within CA264_14840at 3486.521 kb on - strand, within CA264_14840at 3486.521 kb on - strand, within CA264_14840at 3486.529 kb on - strand, within CA264_14840at 3486.531 kb on + strand, within CA264_14840at 3486.532 kb on - strand, within CA264_14840at 3486.586 kb on - strand, within CA264_14840at 3486.588 kb on + strand, within CA264_14840at 3486.589 kb on - strand, within CA264_14840at 3486.616 kb on - strand, within CA264_14840at 3486.616 kb on - strand, within CA264_14840at 3486.641 kb on - strand, within CA264_14840at 3486.695 kb on - strand, within CA264_14840at 3486.704 kb on - strand, within CA264_14840at 3486.704 kb on - strand, within CA264_14840at 3486.810 kb on - strandat 3486.814 kb on + strandat 3486.814 kb on + strandat 3486.815 kb on - strandat 3486.831 kb on + strandat 3486.839 kb on - strandat 3486.847 kb on + strandat 3486.847 kb on + strandat 3486.848 kb on - strandat 3486.848 kb on - strandat 3486.878 kb on - strandat 3486.937 kb on - strandat 3486.937 kb on - strandat 3487.020 kb on + strandat 3487.020 kb on + strandat 3487.021 kb on - strandat 3487.024 kb on + strandat 3487.046 kb on - strandat 3487.098 kb on - strandat 3487.104 kb on + strandat 3487.105 kb on - strandat 3487.105 kb on - strandat 3487.177 kb on - strandat 3487.221 kb on + strand, within CA264_14845at 3487.222 kb on - strand, within CA264_14845at 3487.222 kb on - strand, within CA264_14845at 3487.472 kb on - strand, within CA264_14845at 3487.474 kb on + strand, within CA264_14845at 3487.475 kb on - strand, within CA264_14845at 3487.475 kb on - strand, within CA264_14845at 3487.495 kb on + strand, within CA264_14845at 3487.510 kb on + strand, within CA264_14845at 3487.510 kb on + strand, within CA264_14845at 3487.535 kb on + strand, within CA264_14845at 3487.587 kb on - strand, within CA264_14845at 3487.599 kb on + strand, within CA264_14845at 3487.599 kb on + strand, within CA264_14845at 3487.600 kb on - strand, within CA264_14845at 3487.636 kb on - strand, within CA264_14845at 3487.717 kb on - strand, within CA264_14845at 3487.900 kb on - strand, within CA264_14845at 3487.900 kb on - strand, within CA264_14845

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 10 vol%
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3,484,205 + +0.5
3,484,206 - +1.1
3,484,233 - CA264_14835 0.11 -0.5
3,484,305 + CA264_14835 0.18 +1.2
3,484,313 + CA264_14835 0.18 +0.6
3,484,391 - CA264_14835 0.26 +0.7
3,484,447 - CA264_14835 0.31 +0.9
3,484,506 + CA264_14835 0.36 +0.8
3,484,541 - CA264_14835 0.39 +0.9
3,484,541 - CA264_14835 0.39 +0.8
3,484,629 + CA264_14835 0.48 +0.4
3,484,684 - CA264_14835 0.53 +0.4
3,484,695 + CA264_14835 0.54 +1.8
3,484,718 - CA264_14835 0.56 +0.9
3,484,718 - CA264_14835 0.56 +1.1
3,484,720 - CA264_14835 0.56 +0.3
3,484,720 - CA264_14835 0.56 +0.7
3,484,720 - CA264_14835 0.56 +1.7
3,484,720 - CA264_14835 0.56 +0.8
3,484,750 + CA264_14835 0.59 +0.9
3,484,750 + CA264_14835 0.59 +2.7
3,484,750 + CA264_14835 0.59 -0.5
3,484,750 + CA264_14835 0.59 +0.5
3,484,750 + CA264_14835 0.59 -0.9
3,484,750 + CA264_14835 0.59 +1.3
3,484,750 + CA264_14835 0.59 -0.5
3,484,751 - CA264_14835 0.59 +0.1
3,484,751 - CA264_14835 0.59 +0.1
3,484,751 - CA264_14835 0.59 +0.3
3,484,751 - CA264_14835 0.59 +0.3
3,484,751 - CA264_14835 0.59 -0.9
3,484,751 - CA264_14835 0.59 +0.5
3,484,751 - CA264_14835 0.59 +0.2
3,484,752 + CA264_14835 0.59 +0.9
3,484,752 + CA264_14835 0.59 +1.1
3,484,752 + CA264_14835 0.59 +0.1
3,484,781 + CA264_14835 0.62 +0.3
3,484,784 - CA264_14835 0.62 -0.4
3,484,784 - CA264_14835 0.62 +1.6
3,484,802 - CA264_14835 0.64 +0.8
3,484,842 + CA264_14835 0.67 +0.9
3,484,842 + CA264_14835 0.67 +1.1
3,484,852 + CA264_14835 0.68 -0.5
3,484,853 - CA264_14835 0.68 +2.1
3,484,855 - CA264_14835 0.69 +0.5
3,484,934 - CA264_14835 0.76 +0.3
3,484,987 - CA264_14835 0.81 +0.1
3,484,997 - CA264_14835 0.82 +0.5
3,485,002 - CA264_14835 0.82 +0.2
3,485,040 + CA264_14835 0.86 +0.6
3,485,041 - CA264_14835 0.86 +1.1
3,485,152 + +1.0
3,485,153 - -0.6
3,485,156 + -0.2
3,485,156 + +0.0
3,485,157 - +1.0
3,485,180 + +0.9
3,485,183 - +0.9
3,485,195 + -0.3
3,485,196 - -0.4
3,485,221 + +0.7
3,485,221 + -0.4
3,485,222 - +1.0
3,485,328 + +0.8
3,485,328 + +0.1
3,485,329 - +2.7
3,485,332 - -0.2
3,485,360 - -0.0
3,485,360 - -0.5
3,485,360 - +0.1
3,485,360 - +0.7
3,485,477 - CA264_14840 0.16 +0.8
3,485,484 + CA264_14840 0.16 +0.3
3,485,534 - CA264_14840 0.19 +0.6
3,485,534 - CA264_14840 0.19 +0.1
3,485,564 + CA264_14840 0.21 +0.0
3,485,565 - CA264_14840 0.21 +0.7
3,485,598 + CA264_14840 0.23 +1.2
3,485,615 + CA264_14840 0.24 +0.3
3,485,615 + CA264_14840 0.24 +0.2
3,485,615 + CA264_14840 0.24 +1.1
3,485,616 - CA264_14840 0.24 +1.5
3,485,616 - CA264_14840 0.24 +0.1
3,485,617 + CA264_14840 0.24 +1.2
3,485,617 + CA264_14840 0.24 +1.2
3,485,618 - CA264_14840 0.24 +0.7
3,485,618 - CA264_14840 0.24 +1.4
3,485,639 - CA264_14840 0.25 +1.1
3,485,652 - CA264_14840 0.26 +3.0
3,485,652 - CA264_14840 0.26 +0.7
3,485,654 + CA264_14840 0.26 +0.3
3,485,654 + CA264_14840 0.26 +0.7
3,485,654 + CA264_14840 0.26 +1.1
3,485,654 + CA264_14840 0.26 +0.1
3,485,654 + CA264_14840 0.26 +0.6
3,485,654 + CA264_14840 0.26 +3.4
3,485,655 - CA264_14840 0.26 +1.4
3,485,655 - CA264_14840 0.26 +1.5
3,485,682 - CA264_14840 0.28 +0.6
3,485,683 + CA264_14840 0.28 +0.6
3,485,747 + CA264_14840 0.32 +0.1
3,485,757 + CA264_14840 0.32 -0.1
3,485,761 - CA264_14840 0.32 +0.8
3,485,761 - CA264_14840 0.32 -0.1
3,485,867 - CA264_14840 0.39 +1.2
3,485,903 - CA264_14840 0.41 +1.6
3,485,916 - CA264_14840 0.41 +1.1
3,485,916 - CA264_14840 0.41 +1.1
3,485,916 - CA264_14840 0.41 +0.6
3,485,935 + CA264_14840 0.42 +0.9
3,485,954 - CA264_14840 0.44 +0.2
3,485,970 - CA264_14840 0.45 +0.4
3,485,970 - CA264_14840 0.45 -0.0
3,485,973 + CA264_14840 0.45 +0.8
3,485,991 + CA264_14840 0.46 +2.1
3,486,010 + CA264_14840 0.47 +0.4
3,486,010 + CA264_14840 0.47 +0.2
3,486,010 + CA264_14840 0.47 +0.6
3,486,021 + CA264_14840 0.47 +0.7
3,486,042 + CA264_14840 0.49 +0.7
3,486,042 + CA264_14840 0.49 +0.1
3,486,042 + CA264_14840 0.49 -1.8
3,486,043 - CA264_14840 0.49 +0.3
3,486,046 + CA264_14840 0.49 +1.0
3,486,046 + CA264_14840 0.49 +0.1
3,486,046 + CA264_14840 0.49 +0.8
3,486,046 + CA264_14840 0.49 +0.3
3,486,076 + CA264_14840 0.51 +0.5
3,486,083 - CA264_14840 0.51 +0.3
3,486,094 - CA264_14840 0.52 +0.5
3,486,098 - CA264_14840 0.52 -0.1
3,486,112 + CA264_14840 0.53 +0.1
3,486,116 + CA264_14840 0.53 +0.9
3,486,116 + CA264_14840 0.53 -0.7
3,486,117 - CA264_14840 0.53 +0.2
3,486,117 - CA264_14840 0.53 +1.3
3,486,127 - CA264_14840 0.54 +0.8
3,486,148 + CA264_14840 0.55 +0.3
3,486,156 + CA264_14840 0.55 +0.2
3,486,157 - CA264_14840 0.55 +0.8
3,486,195 + CA264_14840 0.58 +0.3
3,486,205 + CA264_14840 0.58 +2.1
3,486,217 - CA264_14840 0.59 +0.6
3,486,223 + CA264_14840 0.59 +0.7
3,486,230 - CA264_14840 0.60 +0.0
3,486,271 - CA264_14840 0.62 +0.7
3,486,274 + CA264_14840 0.62 +0.9
3,486,274 + CA264_14840 0.62 -0.9
3,486,278 + CA264_14840 0.62 +1.5
3,486,278 + CA264_14840 0.62 +0.1
3,486,278 + CA264_14840 0.62 +0.9
3,486,319 + CA264_14840 0.65 +0.8
3,486,319 + CA264_14840 0.65 +0.9
3,486,352 - CA264_14840 0.67 +0.6
3,486,355 + CA264_14840 0.67 +0.5
3,486,360 + CA264_14840 0.67 +1.2
3,486,402 + CA264_14840 0.70 +1.1
3,486,432 + CA264_14840 0.71 +0.3
3,486,433 - CA264_14840 0.71 +0.8
3,486,433 - CA264_14840 0.71 +0.9
3,486,433 - CA264_14840 0.71 +0.8
3,486,433 - CA264_14840 0.71 -0.2
3,486,433 - CA264_14840 0.71 +0.0
3,486,433 - CA264_14840 0.71 -0.8
3,486,456 - CA264_14840 0.73 +0.6
3,486,470 + CA264_14840 0.73 +2.2
3,486,520 + CA264_14840 0.76 +0.9
3,486,520 + CA264_14840 0.76 -0.9
3,486,521 - CA264_14840 0.76 +0.9
3,486,521 - CA264_14840 0.76 +2.1
3,486,529 - CA264_14840 0.77 +0.9
3,486,531 + CA264_14840 0.77 +0.2
3,486,532 - CA264_14840 0.77 +1.1
3,486,586 - CA264_14840 0.80 +0.5
3,486,588 + CA264_14840 0.80 -0.3
3,486,589 - CA264_14840 0.80 +2.1
3,486,616 - CA264_14840 0.82 +0.5
3,486,616 - CA264_14840 0.82 -1.2
3,486,641 - CA264_14840 0.83 -0.9
3,486,695 - CA264_14840 0.86 -0.5
3,486,704 - CA264_14840 0.87 +1.9
3,486,704 - CA264_14840 0.87 +0.1
3,486,810 - +0.6
3,486,814 + +2.1
3,486,814 + +0.4
3,486,815 - +1.3
3,486,831 + +1.9
3,486,839 - +1.0
3,486,847 + -1.0
3,486,847 + +1.1
3,486,848 - +1.4
3,486,848 - +0.0
3,486,878 - -1.5
3,486,937 - +0.0
3,486,937 - +2.1
3,487,020 + -0.8
3,487,020 + -0.2
3,487,021 - -0.9
3,487,024 + -0.8
3,487,046 - -0.1
3,487,098 - -0.5
3,487,104 + -0.2
3,487,105 - +1.1
3,487,105 - +0.5
3,487,177 - -0.7
3,487,221 + CA264_14845 0.12 +0.0
3,487,222 - CA264_14845 0.12 +1.9
3,487,222 - CA264_14845 0.12 +0.9
3,487,472 - CA264_14845 0.40 +1.3
3,487,474 + CA264_14845 0.40 +1.1
3,487,475 - CA264_14845 0.41 -0.2
3,487,475 - CA264_14845 0.41 +2.1
3,487,495 + CA264_14845 0.43 -0.4
3,487,510 + CA264_14845 0.45 -2.2
3,487,510 + CA264_14845 0.45 +1.3
3,487,535 + CA264_14845 0.47 -2.3
3,487,587 - CA264_14845 0.53 +1.7
3,487,599 + CA264_14845 0.54 -0.0
3,487,599 + CA264_14845 0.54 +0.1
3,487,600 - CA264_14845 0.55 -0.2
3,487,636 - CA264_14845 0.59 +1.3
3,487,717 - CA264_14845 0.68 +1.3
3,487,900 - CA264_14845 0.88 -0.4
3,487,900 - CA264_14845 0.88 +0.5

Or see this region's nucleotide sequence