Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_14135

Experiment: m.b. Dimethyl Sulfoxide 10 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_14125 and CA264_14130 are separated by 84 nucleotidesCA264_14130 and CA264_14135 are separated by 201 nucleotidesCA264_14135 and CA264_14140 are separated by 207 nucleotides CA264_14125: CA264_14125 - endonuclease V, at 3,316,900 to 3,317,583 _14125 CA264_14130: CA264_14130 - GxxExxY protein, at 3,317,668 to 3,318,048 _14130 CA264_14135: CA264_14135 - ATP-dependent chaperone ClpB, at 3,318,250 to 3,320,868 _14135 CA264_14140: CA264_14140 - esterase, at 3,321,076 to 3,321,942 _14140 Position (kb) 3318 3319 3320 3321Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 3317.333 kb on + strand, within CA264_14125at 3317.439 kb on + strand, within CA264_14125at 3317.439 kb on + strand, within CA264_14125at 3317.440 kb on - strand, within CA264_14125at 3317.468 kb on + strand, within CA264_14125at 3317.519 kb on - strandat 3317.521 kb on - strandat 3317.554 kb on + strandat 3317.555 kb on - strandat 3317.611 kb on - strandat 3317.657 kb on - strandat 3317.666 kb on + strandat 3317.689 kb on + strandat 3317.690 kb on - strandat 3317.699 kb on + strandat 3317.700 kb on - strandat 3317.700 kb on - strandat 3317.700 kb on - strandat 3317.700 kb on - strandat 3317.721 kb on + strand, within CA264_14130at 3317.721 kb on + strand, within CA264_14130at 3317.825 kb on + strand, within CA264_14130at 3317.830 kb on + strand, within CA264_14130at 3317.830 kb on + strand, within CA264_14130at 3317.830 kb on + strand, within CA264_14130at 3317.831 kb on - strand, within CA264_14130at 3317.832 kb on + strand, within CA264_14130at 3317.832 kb on + strand, within CA264_14130at 3317.832 kb on + strand, within CA264_14130at 3317.833 kb on - strand, within CA264_14130at 3317.833 kb on - strand, within CA264_14130at 3317.833 kb on - strand, within CA264_14130at 3317.833 kb on - strand, within CA264_14130at 3317.841 kb on - strand, within CA264_14130at 3317.907 kb on - strand, within CA264_14130at 3317.930 kb on + strand, within CA264_14130at 3318.157 kb on + strandat 3318.193 kb on + strandat 3318.204 kb on - strandat 3318.206 kb on - strandat 3318.215 kb on - strandat 3318.220 kb on + strandat 3318.249 kb on + strandat 3318.250 kb on - strandat 3318.259 kb on - strandat 3318.261 kb on + strandat 3318.261 kb on + strandat 3318.261 kb on + strandat 3318.261 kb on + strandat 3318.262 kb on - strandat 3318.266 kb on - strandat 3318.266 kb on - strandat 3318.266 kb on - strandat 3318.268 kb on - strandat 3318.268 kb on - strandat 3318.268 kb on - strandat 3318.308 kb on + strandat 3318.384 kb on - strandat 3318.384 kb on - strandat 3318.452 kb on + strandat 3318.515 kb on + strand, within CA264_14135at 3318.556 kb on + strand, within CA264_14135at 3318.557 kb on - strand, within CA264_14135at 3318.557 kb on - strand, within CA264_14135at 3318.717 kb on + strand, within CA264_14135at 3318.717 kb on + strand, within CA264_14135at 3318.877 kb on - strand, within CA264_14135at 3318.996 kb on + strand, within CA264_14135at 3318.996 kb on + strand, within CA264_14135at 3318.997 kb on - strand, within CA264_14135at 3318.997 kb on - strand, within CA264_14135at 3319.087 kb on - strand, within CA264_14135at 3319.201 kb on + strand, within CA264_14135at 3319.210 kb on + strand, within CA264_14135at 3319.210 kb on + strand, within CA264_14135at 3319.210 kb on + strand, within CA264_14135at 3319.316 kb on - strand, within CA264_14135at 3319.384 kb on + strand, within CA264_14135at 3319.610 kb on + strand, within CA264_14135at 3319.681 kb on + strand, within CA264_14135at 3319.683 kb on + strand, within CA264_14135at 3319.839 kb on - strand, within CA264_14135at 3319.852 kb on - strand, within CA264_14135at 3320.017 kb on - strand, within CA264_14135at 3320.061 kb on + strand, within CA264_14135at 3320.179 kb on - strand, within CA264_14135at 3320.203 kb on + strand, within CA264_14135at 3320.204 kb on - strand, within CA264_14135at 3320.258 kb on - strand, within CA264_14135at 3320.639 kb on + strandat 3320.639 kb on + strandat 3320.671 kb on + strandat 3320.757 kb on + strandat 3320.766 kb on - strandat 3320.810 kb on + strandat 3320.811 kb on - strandat 3320.832 kb on + strandat 3320.836 kb on - strandat 3320.836 kb on - strandat 3320.877 kb on + strandat 3320.877 kb on + strandat 3320.877 kb on + strandat 3320.878 kb on - strandat 3320.878 kb on - strandat 3320.883 kb on + strandat 3320.891 kb on - strandat 3320.891 kb on - strandat 3320.988 kb on + strandat 3321.087 kb on - strandat 3321.101 kb on + strandat 3321.123 kb on - strandat 3321.208 kb on - strand, within CA264_14140at 3321.251 kb on - strand, within CA264_14140at 3321.266 kb on - strand, within CA264_14140at 3321.333 kb on + strand, within CA264_14140at 3321.333 kb on + strand, within CA264_14140at 3321.333 kb on + strand, within CA264_14140at 3321.334 kb on - strand, within CA264_14140at 3321.334 kb on - strand, within CA264_14140at 3321.337 kb on + strand, within CA264_14140at 3321.337 kb on + strand, within CA264_14140at 3321.337 kb on + strand, within CA264_14140at 3321.337 kb on + strand, within CA264_14140at 3321.338 kb on - strand, within CA264_14140at 3321.338 kb on - strand, within CA264_14140at 3321.349 kb on - strand, within CA264_14140at 3321.425 kb on - strand, within CA264_14140at 3321.466 kb on - strand, within CA264_14140at 3321.573 kb on + strand, within CA264_14140at 3321.606 kb on - strand, within CA264_14140at 3321.710 kb on + strand, within CA264_14140at 3321.732 kb on + strand, within CA264_14140at 3321.733 kb on - strand, within CA264_14140at 3321.733 kb on - strand, within CA264_14140at 3321.736 kb on - strand, within CA264_14140at 3321.799 kb on + strand, within CA264_14140at 3321.800 kb on - strand, within CA264_14140at 3321.853 kb on + strand, within CA264_14140

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 10 vol%
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3,317,333 + CA264_14125 0.63 +1.1
3,317,439 + CA264_14125 0.79 -0.2
3,317,439 + CA264_14125 0.79 +0.1
3,317,440 - CA264_14125 0.79 +0.9
3,317,468 + CA264_14125 0.83 +0.6
3,317,519 - -0.3
3,317,521 - +1.1
3,317,554 + -1.2
3,317,555 - +0.0
3,317,611 - +1.5
3,317,657 - +0.5
3,317,666 + +1.1
3,317,689 + +0.2
3,317,690 - -0.5
3,317,699 + -0.9
3,317,700 - +0.1
3,317,700 - +0.4
3,317,700 - -0.2
3,317,700 - -1.0
3,317,721 + CA264_14130 0.14 -0.2
3,317,721 + CA264_14130 0.14 +0.6
3,317,825 + CA264_14130 0.41 +0.1
3,317,830 + CA264_14130 0.43 -0.0
3,317,830 + CA264_14130 0.43 +0.5
3,317,830 + CA264_14130 0.43 +0.7
3,317,831 - CA264_14130 0.43 +2.1
3,317,832 + CA264_14130 0.43 -1.0
3,317,832 + CA264_14130 0.43 +1.7
3,317,832 + CA264_14130 0.43 +0.1
3,317,833 - CA264_14130 0.43 +0.6
3,317,833 - CA264_14130 0.43 -0.1
3,317,833 - CA264_14130 0.43 +0.2
3,317,833 - CA264_14130 0.43 +0.1
3,317,841 - CA264_14130 0.45 +2.9
3,317,907 - CA264_14130 0.63 -0.3
3,317,930 + CA264_14130 0.69 +2.2
3,318,157 + -0.3
3,318,193 + -0.0
3,318,204 - -1.1
3,318,206 - -0.5
3,318,215 - -0.3
3,318,220 + +3.9
3,318,249 + -0.0
3,318,250 - -0.4
3,318,259 - -0.2
3,318,261 + +1.5
3,318,261 + +0.5
3,318,261 + -0.2
3,318,261 + -0.2
3,318,262 - +0.1
3,318,266 - -0.4
3,318,266 - -0.2
3,318,266 - -0.4
3,318,268 - +0.4
3,318,268 - +0.8
3,318,268 - +0.1
3,318,308 + +1.1
3,318,384 - +1.1
3,318,384 - -0.6
3,318,452 + +0.6
3,318,515 + CA264_14135 0.10 -0.2
3,318,556 + CA264_14135 0.12 -1.7
3,318,557 - CA264_14135 0.12 +0.1
3,318,557 - CA264_14135 0.12 -0.2
3,318,717 + CA264_14135 0.18 -0.7
3,318,717 + CA264_14135 0.18 -0.2
3,318,877 - CA264_14135 0.24 +0.4
3,318,996 + CA264_14135 0.28 -0.2
3,318,996 + CA264_14135 0.28 -0.5
3,318,997 - CA264_14135 0.29 -0.6
3,318,997 - CA264_14135 0.29 -0.2
3,319,087 - CA264_14135 0.32 +0.9
3,319,201 + CA264_14135 0.36 -1.7
3,319,210 + CA264_14135 0.37 -1.0
3,319,210 + CA264_14135 0.37 +0.1
3,319,210 + CA264_14135 0.37 +0.1
3,319,316 - CA264_14135 0.41 -0.8
3,319,384 + CA264_14135 0.43 -1.3
3,319,610 + CA264_14135 0.52 -0.1
3,319,681 + CA264_14135 0.55 +0.0
3,319,683 + CA264_14135 0.55 -1.1
3,319,839 - CA264_14135 0.61 -0.2
3,319,852 - CA264_14135 0.61 -0.4
3,320,017 - CA264_14135 0.67 +1.1
3,320,061 + CA264_14135 0.69 +0.2
3,320,179 - CA264_14135 0.74 -2.8
3,320,203 + CA264_14135 0.75 -0.3
3,320,204 - CA264_14135 0.75 +0.1
3,320,258 - CA264_14135 0.77 +1.0
3,320,639 + +0.8
3,320,639 + +0.6
3,320,671 + -0.1
3,320,757 + -0.2
3,320,766 - +0.2
3,320,810 + -0.7
3,320,811 - -0.0
3,320,832 + +1.7
3,320,836 - -0.2
3,320,836 - +0.2
3,320,877 + -1.1
3,320,877 + +1.8
3,320,877 + -1.7
3,320,878 - +0.4
3,320,878 - -0.4
3,320,883 + +0.1
3,320,891 - +0.4
3,320,891 - -1.9
3,320,988 + +0.0
3,321,087 - -0.3
3,321,101 + -0.7
3,321,123 - -0.9
3,321,208 - CA264_14140 0.15 +0.2
3,321,251 - CA264_14140 0.20 +0.2
3,321,266 - CA264_14140 0.22 -1.2
3,321,333 + CA264_14140 0.30 +0.1
3,321,333 + CA264_14140 0.30 -1.2
3,321,333 + CA264_14140 0.30 +0.2
3,321,334 - CA264_14140 0.30 -0.2
3,321,334 - CA264_14140 0.30 -0.8
3,321,337 + CA264_14140 0.30 +0.4
3,321,337 + CA264_14140 0.30 -1.2
3,321,337 + CA264_14140 0.30 -0.3
3,321,337 + CA264_14140 0.30 -0.1
3,321,338 - CA264_14140 0.30 -0.1
3,321,338 - CA264_14140 0.30 -0.1
3,321,349 - CA264_14140 0.31 -0.5
3,321,425 - CA264_14140 0.40 -0.6
3,321,466 - CA264_14140 0.45 +1.7
3,321,573 + CA264_14140 0.57 -0.5
3,321,606 - CA264_14140 0.61 +0.1
3,321,710 + CA264_14140 0.73 -0.2
3,321,732 + CA264_14140 0.76 -2.2
3,321,733 - CA264_14140 0.76 +0.6
3,321,733 - CA264_14140 0.76 +0.1
3,321,736 - CA264_14140 0.76 -1.6
3,321,799 + CA264_14140 0.83 +0.1
3,321,800 - CA264_14140 0.84 +2.7
3,321,853 + CA264_14140 0.90 -0.7

Or see this region's nucleotide sequence