Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_14045

Experiment: m.b. Dimethyl Sulfoxide 10 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_14040 and CA264_14045 are separated by 147 nucleotidesCA264_14045 and CA264_14050 are separated by 42 nucleotides CA264_14040: CA264_14040 - peptidase S41, at 3,287,985 to 3,289,433 _14040 CA264_14045: CA264_14045 - hypothetical protein, at 3,289,581 to 3,290,990 _14045 CA264_14050: CA264_14050 - hypothetical protein, at 3,291,033 to 3,293,399 _14050 Position (kb) 3289 3290 3291Strain fitness (log2 ratio) -2 -1 0 1 2at 3288.603 kb on + strand, within CA264_14040at 3288.674 kb on + strand, within CA264_14040at 3288.674 kb on + strand, within CA264_14040at 3288.680 kb on - strand, within CA264_14040at 3288.727 kb on - strand, within CA264_14040at 3288.956 kb on + strand, within CA264_14040at 3288.967 kb on + strand, within CA264_14040at 3289.000 kb on + strand, within CA264_14040at 3289.000 kb on + strand, within CA264_14040at 3289.018 kb on - strand, within CA264_14040at 3289.018 kb on - strand, within CA264_14040at 3289.054 kb on + strand, within CA264_14040at 3289.078 kb on - strand, within CA264_14040at 3289.078 kb on - strand, within CA264_14040at 3289.097 kb on + strand, within CA264_14040at 3289.161 kb on - strand, within CA264_14040at 3289.192 kb on + strand, within CA264_14040at 3289.192 kb on + strand, within CA264_14040at 3289.193 kb on - strand, within CA264_14040at 3289.195 kb on - strand, within CA264_14040at 3289.199 kb on + strand, within CA264_14040at 3289.234 kb on - strand, within CA264_14040at 3289.256 kb on + strand, within CA264_14040at 3289.349 kb on + strandat 3289.349 kb on + strandat 3289.401 kb on + strandat 3289.402 kb on - strandat 3289.402 kb on - strandat 3289.493 kb on - strandat 3289.493 kb on - strandat 3289.507 kb on - strandat 3289.521 kb on + strandat 3289.522 kb on - strandat 3289.553 kb on - strandat 3289.582 kb on + strandat 3289.583 kb on - strandat 3289.584 kb on + strandat 3289.627 kb on + strandat 3289.628 kb on - strandat 3289.664 kb on - strandat 3289.775 kb on + strand, within CA264_14045at 3289.776 kb on - strand, within CA264_14045at 3289.786 kb on + strand, within CA264_14045at 3289.813 kb on + strand, within CA264_14045at 3289.814 kb on - strand, within CA264_14045at 3289.831 kb on + strand, within CA264_14045at 3289.832 kb on - strand, within CA264_14045at 3289.844 kb on - strand, within CA264_14045at 3289.860 kb on + strand, within CA264_14045at 3289.860 kb on + strand, within CA264_14045at 3289.915 kb on + strand, within CA264_14045at 3290.001 kb on - strand, within CA264_14045at 3290.002 kb on + strand, within CA264_14045at 3290.002 kb on + strand, within CA264_14045at 3290.006 kb on + strand, within CA264_14045at 3290.007 kb on - strand, within CA264_14045at 3290.057 kb on + strand, within CA264_14045at 3290.092 kb on - strand, within CA264_14045at 3290.108 kb on + strand, within CA264_14045at 3290.109 kb on - strand, within CA264_14045at 3290.117 kb on - strand, within CA264_14045at 3290.135 kb on + strand, within CA264_14045at 3290.189 kb on - strand, within CA264_14045at 3290.207 kb on + strand, within CA264_14045at 3290.210 kb on - strand, within CA264_14045at 3290.212 kb on + strand, within CA264_14045at 3290.286 kb on + strand, within CA264_14045at 3290.286 kb on + strand, within CA264_14045at 3290.287 kb on - strand, within CA264_14045at 3290.287 kb on - strand, within CA264_14045at 3290.287 kb on - strand, within CA264_14045at 3290.287 kb on - strand, within CA264_14045at 3290.395 kb on + strand, within CA264_14045at 3290.398 kb on + strand, within CA264_14045at 3290.399 kb on - strand, within CA264_14045at 3290.408 kb on - strand, within CA264_14045at 3290.473 kb on + strand, within CA264_14045at 3290.503 kb on + strand, within CA264_14045at 3290.507 kb on - strand, within CA264_14045at 3290.523 kb on + strand, within CA264_14045at 3290.523 kb on + strand, within CA264_14045at 3290.548 kb on - strand, within CA264_14045at 3290.632 kb on + strand, within CA264_14045at 3290.632 kb on + strand, within CA264_14045at 3290.632 kb on + strand, within CA264_14045at 3290.632 kb on + strand, within CA264_14045at 3290.632 kb on + strand, within CA264_14045at 3290.633 kb on - strand, within CA264_14045at 3290.633 kb on - strand, within CA264_14045at 3290.633 kb on - strand, within CA264_14045at 3290.711 kb on - strand, within CA264_14045at 3290.871 kb on + strandat 3290.871 kb on + strandat 3290.872 kb on - strandat 3290.875 kb on + strandat 3290.875 kb on + strandat 3290.876 kb on - strandat 3290.876 kb on - strandat 3290.879 kb on + strandat 3290.880 kb on - strandat 3290.880 kb on - strandat 3290.928 kb on + strandat 3290.928 kb on + strandat 3290.929 kb on - strandat 3290.929 kb on - strandat 3290.951 kb on + strandat 3290.975 kb on + strandat 3291.014 kb on + strandat 3291.154 kb on - strandat 3291.195 kb on - strandat 3291.195 kb on - strandat 3291.200 kb on - strandat 3291.268 kb on + strandat 3291.269 kb on - strandat 3291.297 kb on + strand, within CA264_14050at 3291.298 kb on - strand, within CA264_14050at 3291.343 kb on - strand, within CA264_14050at 3291.374 kb on + strand, within CA264_14050at 3291.397 kb on + strand, within CA264_14050at 3291.434 kb on - strand, within CA264_14050at 3291.466 kb on + strand, within CA264_14050at 3291.568 kb on - strand, within CA264_14050at 3291.648 kb on + strand, within CA264_14050at 3291.649 kb on - strand, within CA264_14050at 3291.678 kb on - strand, within CA264_14050at 3291.691 kb on - strand, within CA264_14050at 3291.832 kb on - strand, within CA264_14050at 3291.979 kb on + strand, within CA264_14050

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 10 vol%
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3,288,603 + CA264_14040 0.43 -0.9
3,288,674 + CA264_14040 0.48 +2.7
3,288,674 + CA264_14040 0.48 +1.1
3,288,680 - CA264_14040 0.48 -1.5
3,288,727 - CA264_14040 0.51 -0.8
3,288,956 + CA264_14040 0.67 -0.3
3,288,967 + CA264_14040 0.68 +1.5
3,289,000 + CA264_14040 0.70 -1.0
3,289,000 + CA264_14040 0.70 +0.1
3,289,018 - CA264_14040 0.71 +0.7
3,289,018 - CA264_14040 0.71 -0.7
3,289,054 + CA264_14040 0.74 +0.5
3,289,078 - CA264_14040 0.75 +0.2
3,289,078 - CA264_14040 0.75 +0.4
3,289,097 + CA264_14040 0.77 -0.7
3,289,161 - CA264_14040 0.81 +0.2
3,289,192 + CA264_14040 0.83 +0.2
3,289,192 + CA264_14040 0.83 -0.5
3,289,193 - CA264_14040 0.83 +0.5
3,289,195 - CA264_14040 0.84 -0.2
3,289,199 + CA264_14040 0.84 -0.7
3,289,234 - CA264_14040 0.86 -0.5
3,289,256 + CA264_14040 0.88 +1.7
3,289,349 + +0.5
3,289,349 + +0.1
3,289,401 + +0.1
3,289,402 - -0.1
3,289,402 - -2.1
3,289,493 - +0.3
3,289,493 - -0.0
3,289,507 - +1.1
3,289,521 + -0.1
3,289,522 - +1.5
3,289,553 - -0.2
3,289,582 + -0.1
3,289,583 - +0.0
3,289,584 + -0.6
3,289,627 + +0.8
3,289,628 - -0.6
3,289,664 - +0.6
3,289,775 + CA264_14045 0.14 +0.9
3,289,776 - CA264_14045 0.14 -0.1
3,289,786 + CA264_14045 0.15 -0.4
3,289,813 + CA264_14045 0.16 -1.3
3,289,814 - CA264_14045 0.17 +1.7
3,289,831 + CA264_14045 0.18 +0.1
3,289,832 - CA264_14045 0.18 -0.5
3,289,844 - CA264_14045 0.19 +0.6
3,289,860 + CA264_14045 0.20 -0.9
3,289,860 + CA264_14045 0.20 +0.7
3,289,915 + CA264_14045 0.24 -0.8
3,290,001 - CA264_14045 0.30 -0.1
3,290,002 + CA264_14045 0.30 -0.9
3,290,002 + CA264_14045 0.30 -0.3
3,290,006 + CA264_14045 0.30 -0.6
3,290,007 - CA264_14045 0.30 -1.1
3,290,057 + CA264_14045 0.34 +0.1
3,290,092 - CA264_14045 0.36 +0.9
3,290,108 + CA264_14045 0.37 +1.7
3,290,109 - CA264_14045 0.37 +2.7
3,290,117 - CA264_14045 0.38 +1.1
3,290,135 + CA264_14045 0.39 +0.8
3,290,189 - CA264_14045 0.43 -1.7
3,290,207 + CA264_14045 0.44 -2.1
3,290,210 - CA264_14045 0.45 -2.2
3,290,212 + CA264_14045 0.45 -0.5
3,290,286 + CA264_14045 0.50 -0.5
3,290,286 + CA264_14045 0.50 -0.5
3,290,287 - CA264_14045 0.50 -0.1
3,290,287 - CA264_14045 0.50 -0.2
3,290,287 - CA264_14045 0.50 -0.5
3,290,287 - CA264_14045 0.50 -0.4
3,290,395 + CA264_14045 0.58 -0.4
3,290,398 + CA264_14045 0.58 -0.0
3,290,399 - CA264_14045 0.58 -0.1
3,290,408 - CA264_14045 0.59 +0.9
3,290,473 + CA264_14045 0.63 +2.1
3,290,503 + CA264_14045 0.65 -0.5
3,290,507 - CA264_14045 0.66 +1.1
3,290,523 + CA264_14045 0.67 -0.7
3,290,523 + CA264_14045 0.67 +0.3
3,290,548 - CA264_14045 0.69 +0.9
3,290,632 + CA264_14045 0.75 -1.5
3,290,632 + CA264_14045 0.75 -0.2
3,290,632 + CA264_14045 0.75 -0.8
3,290,632 + CA264_14045 0.75 -0.1
3,290,632 + CA264_14045 0.75 -0.1
3,290,633 - CA264_14045 0.75 -0.5
3,290,633 - CA264_14045 0.75 -0.7
3,290,633 - CA264_14045 0.75 +2.7
3,290,711 - CA264_14045 0.80 -1.6
3,290,871 + -0.7
3,290,871 + +0.2
3,290,872 - +2.1
3,290,875 + -0.9
3,290,875 + +0.0
3,290,876 - +1.1
3,290,876 - +1.2
3,290,879 + -1.2
3,290,880 - +0.2
3,290,880 - +0.2
3,290,928 + -2.2
3,290,928 + +2.5
3,290,929 - +0.1
3,290,929 - +0.3
3,290,951 + -0.8
3,290,975 + +0.2
3,291,014 + -0.2
3,291,154 - -0.8
3,291,195 - +0.4
3,291,195 - +0.6
3,291,200 - -0.7
3,291,268 + -0.7
3,291,269 - -0.2
3,291,297 + CA264_14050 0.11 -0.1
3,291,298 - CA264_14050 0.11 -0.8
3,291,343 - CA264_14050 0.13 -0.5
3,291,374 + CA264_14050 0.14 -0.5
3,291,397 + CA264_14050 0.15 +0.0
3,291,434 - CA264_14050 0.17 -0.1
3,291,466 + CA264_14050 0.18 -0.6
3,291,568 - CA264_14050 0.23 +1.7
3,291,648 + CA264_14050 0.26 +0.8
3,291,649 - CA264_14050 0.26 +0.1
3,291,678 - CA264_14050 0.27 -1.7
3,291,691 - CA264_14050 0.28 -0.5
3,291,832 - CA264_14050 0.34 +1.1
3,291,979 + CA264_14050 0.40 +0.1

Or see this region's nucleotide sequence