Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_13205

Experiment: m.b. Dimethyl Sulfoxide 10 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_13200 and CA264_13205 are separated by 74 nucleotidesCA264_13205 and CA264_13210 are separated by 255 nucleotidesCA264_13210 and CA264_13215 are separated by 153 nucleotides CA264_13200: CA264_13200 - lysine--tRNA ligase, at 3,078,439 to 3,079,983 _13200 CA264_13205: CA264_13205 - hypothetical protein, at 3,080,058 to 3,080,507 _13205 CA264_13210: CA264_13210 - hypothetical protein, at 3,080,763 to 3,081,101 _13210 CA264_13215: CA264_13215 - hypothetical protein, at 3,081,255 to 3,081,674 _13215 Position (kb) 3080 3081Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3080.059 kb on + strandat 3080.084 kb on + strandat 3080.084 kb on + strandat 3080.084 kb on + strandat 3080.085 kb on - strandat 3080.100 kb on - strandat 3080.227 kb on - strand, within CA264_13205at 3080.276 kb on + strand, within CA264_13205at 3080.364 kb on + strand, within CA264_13205at 3080.382 kb on + strand, within CA264_13205at 3080.422 kb on + strand, within CA264_13205at 3080.423 kb on - strand, within CA264_13205at 3080.443 kb on - strand, within CA264_13205at 3080.508 kb on - strandat 3080.519 kb on + strandat 3080.540 kb on - strandat 3080.587 kb on - strandat 3080.587 kb on - strandat 3080.607 kb on - strandat 3080.798 kb on + strand, within CA264_13210at 3080.799 kb on - strand, within CA264_13210at 3080.964 kb on - strand, within CA264_13210at 3080.973 kb on - strand, within CA264_13210at 3081.015 kb on - strand, within CA264_13210at 3081.079 kb on - strandat 3081.090 kb on - strandat 3081.137 kb on + strandat 3081.138 kb on - strandat 3081.157 kb on - strandat 3081.169 kb on - strandat 3081.169 kb on - strandat 3081.173 kb on + strandat 3081.174 kb on - strandat 3081.176 kb on - strandat 3081.179 kb on + strandat 3081.180 kb on - strandat 3081.180 kb on - strandat 3081.181 kb on + strandat 3081.182 kb on - strandat 3081.189 kb on - strandat 3081.207 kb on - strandat 3081.217 kb on + strandat 3081.331 kb on + strand, within CA264_13215at 3081.332 kb on - strand, within CA264_13215at 3081.332 kb on - strand, within CA264_13215at 3081.358 kb on + strand, within CA264_13215at 3081.364 kb on - strand, within CA264_13215at 3081.388 kb on + strand, within CA264_13215at 3081.388 kb on + strand, within CA264_13215

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 10 vol%
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3,080,059 + +0.0
3,080,084 + +1.0
3,080,084 + +0.0
3,080,084 + +3.0
3,080,085 - +0.4
3,080,100 - +2.0
3,080,227 - CA264_13205 0.38 -1.8
3,080,276 + CA264_13205 0.48 +0.6
3,080,364 + CA264_13205 0.68 -0.4
3,080,382 + CA264_13205 0.72 -0.9
3,080,422 + CA264_13205 0.81 -1.2
3,080,423 - CA264_13205 0.81 -0.4
3,080,443 - CA264_13205 0.86 +0.0
3,080,508 - -1.0
3,080,519 + +0.0
3,080,540 - +0.3
3,080,587 - -0.1
3,080,587 - -0.0
3,080,607 - -0.1
3,080,798 + CA264_13210 0.10 +0.3
3,080,799 - CA264_13210 0.11 +1.4
3,080,964 - CA264_13210 0.59 +1.0
3,080,973 - CA264_13210 0.62 -0.5
3,081,015 - CA264_13210 0.74 +0.7
3,081,079 - +1.2
3,081,090 - +1.7
3,081,137 + -0.8
3,081,138 - +1.4
3,081,157 - -1.1
3,081,169 - -1.1
3,081,169 - +0.9
3,081,173 + -0.9
3,081,174 - +0.3
3,081,176 - +2.0
3,081,179 + +1.2
3,081,180 - -0.3
3,081,180 - -1.4
3,081,181 + +0.5
3,081,182 - +0.5
3,081,189 - -0.2
3,081,207 - -0.7
3,081,217 + -2.0
3,081,331 + CA264_13215 0.18 -0.6
3,081,332 - CA264_13215 0.18 -1.2
3,081,332 - CA264_13215 0.18 -0.3
3,081,358 + CA264_13215 0.25 +0.5
3,081,364 - CA264_13215 0.26 +2.0
3,081,388 + CA264_13215 0.32 +0.2
3,081,388 + CA264_13215 0.32 +0.8

Or see this region's nucleotide sequence