Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_12115

Experiment: m.b. Dimethyl Sulfoxide 10 vol%

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_12110 and CA264_12115 overlap by 4 nucleotidesCA264_12115 and CA264_12120 overlap by 11 nucleotides CA264_12110: CA264_12110 - glycosyltransferase, at 2,824,013 to 2,825,122 _12110 CA264_12115: CA264_12115 - hypothetical protein, at 2,825,119 to 2,826,225 _12115 CA264_12120: CA264_12120 - glycosyltransferase, at 2,826,215 to 2,827,357 _12120 Position (kb) 2825 2826 2827Strain fitness (log2 ratio) -2 -1 0 1at 2824.156 kb on + strand, within CA264_12110at 2824.156 kb on + strand, within CA264_12110at 2824.448 kb on + strand, within CA264_12110at 2824.461 kb on + strand, within CA264_12110at 2824.630 kb on - strand, within CA264_12110at 2824.657 kb on - strand, within CA264_12110at 2824.713 kb on + strand, within CA264_12110at 2824.714 kb on - strand, within CA264_12110at 2824.717 kb on + strand, within CA264_12110at 2824.718 kb on - strand, within CA264_12110at 2824.718 kb on - strand, within CA264_12110at 2824.746 kb on + strand, within CA264_12110at 2824.747 kb on - strand, within CA264_12110at 2824.794 kb on + strand, within CA264_12110at 2824.795 kb on - strand, within CA264_12110at 2824.861 kb on - strand, within CA264_12110at 2824.936 kb on - strand, within CA264_12110at 2824.953 kb on + strand, within CA264_12110at 2825.036 kb on + strandat 2825.037 kb on - strandat 2825.112 kb on - strandat 2825.137 kb on - strandat 2825.191 kb on - strandat 2825.192 kb on + strandat 2825.192 kb on + strandat 2825.193 kb on - strandat 2825.306 kb on - strand, within CA264_12115at 2825.443 kb on - strand, within CA264_12115at 2825.484 kb on + strand, within CA264_12115at 2825.484 kb on + strand, within CA264_12115at 2825.485 kb on - strand, within CA264_12115at 2825.487 kb on + strand, within CA264_12115at 2825.487 kb on + strand, within CA264_12115at 2825.487 kb on + strand, within CA264_12115at 2825.489 kb on + strand, within CA264_12115at 2825.509 kb on - strand, within CA264_12115at 2825.509 kb on - strand, within CA264_12115at 2825.712 kb on - strand, within CA264_12115at 2825.755 kb on + strand, within CA264_12115at 2825.795 kb on + strand, within CA264_12115at 2825.960 kb on - strand, within CA264_12115at 2825.997 kb on + strand, within CA264_12115at 2826.031 kb on + strand, within CA264_12115at 2826.080 kb on + strand, within CA264_12115at 2826.133 kb on + strandat 2826.146 kb on + strandat 2826.147 kb on - strandat 2826.147 kb on - strandat 2826.147 kb on - strandat 2826.147 kb on - strandat 2826.269 kb on + strandat 2826.269 kb on + strandat 2826.345 kb on - strand, within CA264_12120at 2826.559 kb on - strand, within CA264_12120at 2826.590 kb on - strand, within CA264_12120at 2826.591 kb on + strand, within CA264_12120at 2826.592 kb on - strand, within CA264_12120at 2826.622 kb on + strand, within CA264_12120at 2826.897 kb on - strand, within CA264_12120at 2827.013 kb on - strand, within CA264_12120at 2827.014 kb on + strand, within CA264_12120at 2827.015 kb on - strand, within CA264_12120

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 10 vol%
remove
2,824,156 + CA264_12110 0.13 -1.8
2,824,156 + CA264_12110 0.13 -0.0
2,824,448 + CA264_12110 0.39 +0.7
2,824,461 + CA264_12110 0.40 +0.8
2,824,630 - CA264_12110 0.56 -0.1
2,824,657 - CA264_12110 0.58 -0.3
2,824,713 + CA264_12110 0.63 +0.5
2,824,714 - CA264_12110 0.63 -0.6
2,824,717 + CA264_12110 0.63 -1.5
2,824,718 - CA264_12110 0.64 +0.4
2,824,718 - CA264_12110 0.64 -0.6
2,824,746 + CA264_12110 0.66 +0.9
2,824,747 - CA264_12110 0.66 -0.6
2,824,794 + CA264_12110 0.70 -0.5
2,824,795 - CA264_12110 0.70 +0.6
2,824,861 - CA264_12110 0.76 -1.3
2,824,936 - CA264_12110 0.83 -0.8
2,824,953 + CA264_12110 0.85 +0.6
2,825,036 + +1.0
2,825,037 - -0.8
2,825,112 - +1.0
2,825,137 - +0.6
2,825,191 - -0.0
2,825,192 + +0.6
2,825,192 + -0.8
2,825,193 - -0.8
2,825,306 - CA264_12115 0.17 -0.3
2,825,443 - CA264_12115 0.29 -2.0
2,825,484 + CA264_12115 0.33 -1.0
2,825,484 + CA264_12115 0.33 -0.0
2,825,485 - CA264_12115 0.33 -0.0
2,825,487 + CA264_12115 0.33 -1.0
2,825,487 + CA264_12115 0.33 -1.4
2,825,487 + CA264_12115 0.33 +0.4
2,825,489 + CA264_12115 0.33 -0.9
2,825,509 - CA264_12115 0.35 -1.0
2,825,509 - CA264_12115 0.35 -0.6
2,825,712 - CA264_12115 0.54 +0.1
2,825,755 + CA264_12115 0.57 -1.3
2,825,795 + CA264_12115 0.61 -0.1
2,825,960 - CA264_12115 0.76 -1.2
2,825,997 + CA264_12115 0.79 -0.7
2,826,031 + CA264_12115 0.82 -2.3
2,826,080 + CA264_12115 0.87 -0.7
2,826,133 + -0.5
2,826,146 + +0.2
2,826,147 - -0.2
2,826,147 - -1.8
2,826,147 - -1.3
2,826,147 - -1.3
2,826,269 + -0.6
2,826,269 + +0.4
2,826,345 - CA264_12120 0.11 -0.6
2,826,559 - CA264_12120 0.30 -0.8
2,826,590 - CA264_12120 0.33 -2.0
2,826,591 + CA264_12120 0.33 +0.3
2,826,592 - CA264_12120 0.33 -1.0
2,826,622 + CA264_12120 0.36 +1.0
2,826,897 - CA264_12120 0.60 -0.3
2,827,013 - CA264_12120 0.70 -1.2
2,827,014 + CA264_12120 0.70 +0.2
2,827,015 - CA264_12120 0.70 -0.3

Or see this region's nucleotide sequence