Experiment: m.b. Dimethyl Sulfoxide 10 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_11960 and CA264_11965 are separated by 416 nucleotides CA264_11965 and CA264_11970 are separated by 44 nucleotides CA264_11970 and CA264_11975 are separated by 72 nucleotides
CA264_11960: CA264_11960 - transketolase, at 2,779,834 to 2,780,793
_11960
CA264_11965: CA264_11965 - RNA polymerase subunit sigma, at 2,781,210 to 2,781,749
_11965
CA264_11970: CA264_11970 - hypothetical protein, at 2,781,794 to 2,782,222
_11970
CA264_11975: CA264_11975 - hypothetical protein, at 2,782,295 to 2,782,684
_11975
Position (kb)
2781
2782 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2780.825 kb on + strand at 2780.830 kb on + strand at 2780.830 kb on + strand at 2780.831 kb on - strand at 2780.877 kb on + strand at 2780.878 kb on - strand at 2780.878 kb on - strand at 2781.031 kb on + strand at 2781.081 kb on + strand at 2781.154 kb on - strand at 2781.155 kb on + strand at 2781.155 kb on + strand at 2781.288 kb on + strand, within CA264_11965 at 2781.288 kb on + strand, within CA264_11965 at 2781.303 kb on + strand, within CA264_11965 at 2781.303 kb on + strand, within CA264_11965 at 2781.304 kb on - strand, within CA264_11965 at 2781.376 kb on + strand, within CA264_11965 at 2781.416 kb on - strand, within CA264_11965 at 2781.417 kb on + strand, within CA264_11965 at 2781.417 kb on + strand, within CA264_11965 at 2781.417 kb on + strand, within CA264_11965 at 2781.417 kb on + strand, within CA264_11965 at 2781.418 kb on - strand, within CA264_11965 at 2781.418 kb on - strand, within CA264_11965 at 2781.418 kb on - strand, within CA264_11965 at 2781.418 kb on - strand, within CA264_11965 at 2781.505 kb on + strand, within CA264_11965 at 2781.563 kb on - strand, within CA264_11965 at 2781.574 kb on + strand, within CA264_11965 at 2781.702 kb on + strand at 2781.724 kb on + strand at 2781.748 kb on - strand at 2781.780 kb on + strand at 2781.781 kb on - strand at 2781.781 kb on - strand at 2781.781 kb on - strand at 2781.840 kb on - strand, within CA264_11970 at 2781.993 kb on - strand, within CA264_11970 at 2781.993 kb on - strand, within CA264_11970 at 2782.030 kb on - strand, within CA264_11970 at 2782.155 kb on + strand, within CA264_11970 at 2782.194 kb on - strand at 2782.199 kb on - strand at 2782.218 kb on - strand at 2782.220 kb on + strand at 2782.239 kb on - strand at 2782.246 kb on + strand at 2782.257 kb on + strand at 2782.285 kb on + strand at 2782.378 kb on + strand, within CA264_11975 at 2782.422 kb on - strand, within CA264_11975 at 2782.523 kb on - strand, within CA264_11975 at 2782.523 kb on - strand, within CA264_11975
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 10 vol% remove 2,780,825 + -1.8 2,780,830 + -0.8 2,780,830 + +0.0 2,780,831 - -0.9 2,780,877 + +0.7 2,780,878 - +0.2 2,780,878 - -0.3 2,781,031 + -0.3 2,781,081 + +0.2 2,781,154 - -0.4 2,781,155 + -1.0 2,781,155 + -0.6 2,781,288 + CA264_11965 0.14 -0.7 2,781,288 + CA264_11965 0.14 +0.7 2,781,303 + CA264_11965 0.17 +0.4 2,781,303 + CA264_11965 0.17 -0.1 2,781,304 - CA264_11965 0.17 +1.0 2,781,376 + CA264_11965 0.31 -1.3 2,781,416 - CA264_11965 0.38 -0.6 2,781,417 + CA264_11965 0.38 +0.0 2,781,417 + CA264_11965 0.38 -1.3 2,781,417 + CA264_11965 0.38 -1.1 2,781,417 + CA264_11965 0.38 +0.6 2,781,418 - CA264_11965 0.39 +0.7 2,781,418 - CA264_11965 0.39 +0.8 2,781,418 - CA264_11965 0.39 -0.6 2,781,418 - CA264_11965 0.39 +1.4 2,781,505 + CA264_11965 0.55 +0.3 2,781,563 - CA264_11965 0.65 +2.0 2,781,574 + CA264_11965 0.67 +1.0 2,781,702 + -0.2 2,781,724 + +0.1 2,781,748 - +2.0 2,781,780 + -0.1 2,781,781 - -0.2 2,781,781 - +0.2 2,781,781 - +1.3 2,781,840 - CA264_11970 0.11 +0.5 2,781,993 - CA264_11970 0.46 +0.4 2,781,993 - CA264_11970 0.46 -0.3 2,782,030 - CA264_11970 0.55 +2.6 2,782,155 + CA264_11970 0.84 -1.0 2,782,194 - +0.0 2,782,199 - +0.1 2,782,218 - +0.4 2,782,220 + -0.7 2,782,239 - +1.0 2,782,246 + -0.8 2,782,257 + +0.1 2,782,285 + -0.6 2,782,378 + CA264_11975 0.21 -0.4 2,782,422 - CA264_11975 0.33 +0.9 2,782,523 - CA264_11975 0.58 -1.4 2,782,523 - CA264_11975 0.58 +0.0
Or see this region's nucleotide sequence