Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_09645

Experiment: m.b. Dimethyl Sulfoxide 10 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_09635 and CA264_09640 are separated by 98 nucleotidesCA264_09640 and CA264_09645 are separated by 89 nucleotidesCA264_09645 and CA264_09650 are separated by 82 nucleotidesCA264_09650 and CA264_09655 are separated by 73 nucleotides CA264_09635: CA264_09635 - hypothetical protein, at 2,245,004 to 2,245,669 _09635 CA264_09640: CA264_09640 - hypothetical protein, at 2,245,768 to 2,246,403 _09640 CA264_09645: CA264_09645 - hypothetical protein, at 2,246,493 to 2,246,888 _09645 CA264_09650: CA264_09650 - hypothetical protein, at 2,246,971 to 2,247,432 _09650 CA264_09655: CA264_09655 - SMI1/KNR4 family protein, at 2,247,506 to 2,247,943 _09655 Position (kb) 2246 2247Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2245.530 kb on - strand, within CA264_09635at 2245.530 kb on - strand, within CA264_09635at 2245.558 kb on + strand, within CA264_09635at 2245.591 kb on + strand, within CA264_09635at 2245.596 kb on - strand, within CA264_09635at 2245.655 kb on - strandat 2245.698 kb on + strandat 2245.699 kb on - strandat 2245.717 kb on + strandat 2245.718 kb on - strandat 2245.745 kb on - strandat 2245.745 kb on - strandat 2245.756 kb on - strandat 2245.756 kb on - strandat 2245.763 kb on + strandat 2245.770 kb on - strandat 2245.770 kb on - strandat 2245.841 kb on + strand, within CA264_09640at 2245.841 kb on + strand, within CA264_09640at 2245.841 kb on + strand, within CA264_09640at 2245.842 kb on - strand, within CA264_09640at 2245.916 kb on + strand, within CA264_09640at 2245.936 kb on + strand, within CA264_09640at 2245.957 kb on - strand, within CA264_09640at 2245.987 kb on + strand, within CA264_09640at 2245.987 kb on + strand, within CA264_09640at 2246.007 kb on + strand, within CA264_09640at 2246.022 kb on + strand, within CA264_09640at 2246.024 kb on + strand, within CA264_09640at 2246.031 kb on + strand, within CA264_09640at 2246.036 kb on - strand, within CA264_09640at 2246.047 kb on + strand, within CA264_09640at 2246.078 kb on - strand, within CA264_09640at 2246.078 kb on - strand, within CA264_09640at 2246.078 kb on - strand, within CA264_09640at 2246.083 kb on - strand, within CA264_09640at 2246.083 kb on - strand, within CA264_09640at 2246.102 kb on - strand, within CA264_09640at 2246.219 kb on - strand, within CA264_09640at 2246.248 kb on - strand, within CA264_09640at 2246.255 kb on + strand, within CA264_09640at 2246.289 kb on + strand, within CA264_09640at 2246.290 kb on - strand, within CA264_09640at 2246.365 kb on - strandat 2246.384 kb on - strandat 2246.420 kb on + strandat 2246.495 kb on - strandat 2246.516 kb on + strandat 2246.608 kb on - strand, within CA264_09645at 2246.719 kb on - strand, within CA264_09645at 2246.728 kb on - strand, within CA264_09645at 2246.729 kb on + strand, within CA264_09645at 2246.741 kb on + strand, within CA264_09645at 2246.741 kb on + strand, within CA264_09645at 2246.847 kb on + strand, within CA264_09645at 2246.875 kb on + strandat 2246.876 kb on - strandat 2246.893 kb on + strandat 2246.901 kb on - strandat 2246.921 kb on + strandat 2246.922 kb on - strandat 2246.937 kb on + strandat 2246.937 kb on + strandat 2247.074 kb on - strand, within CA264_09650at 2247.079 kb on + strand, within CA264_09650at 2247.109 kb on - strand, within CA264_09650at 2247.109 kb on - strand, within CA264_09650at 2247.174 kb on - strand, within CA264_09650at 2247.174 kb on - strand, within CA264_09650at 2247.182 kb on - strand, within CA264_09650at 2247.282 kb on + strand, within CA264_09650at 2247.366 kb on - strand, within CA264_09650at 2247.443 kb on - strandat 2247.507 kb on + strandat 2247.580 kb on + strand, within CA264_09655at 2247.580 kb on + strand, within CA264_09655at 2247.580 kb on + strand, within CA264_09655at 2247.583 kb on - strand, within CA264_09655at 2247.583 kb on - strand, within CA264_09655at 2247.583 kb on - strand, within CA264_09655at 2247.583 kb on - strand, within CA264_09655at 2247.584 kb on + strand, within CA264_09655at 2247.584 kb on + strand, within CA264_09655at 2247.585 kb on - strand, within CA264_09655at 2247.585 kb on - strand, within CA264_09655at 2247.592 kb on - strand, within CA264_09655at 2247.592 kb on - strand, within CA264_09655at 2247.656 kb on + strand, within CA264_09655at 2247.666 kb on - strand, within CA264_09655at 2247.683 kb on - strand, within CA264_09655at 2247.689 kb on + strand, within CA264_09655at 2247.690 kb on - strand, within CA264_09655at 2247.697 kb on + strand, within CA264_09655at 2247.698 kb on - strand, within CA264_09655at 2247.720 kb on - strand, within CA264_09655at 2247.721 kb on + strand, within CA264_09655at 2247.722 kb on - strand, within CA264_09655at 2247.722 kb on - strand, within CA264_09655at 2247.722 kb on - strand, within CA264_09655at 2247.726 kb on + strand, within CA264_09655at 2247.726 kb on + strand, within CA264_09655at 2247.827 kb on - strand, within CA264_09655at 2247.828 kb on + strand, within CA264_09655

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 10 vol%
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2,245,530 - CA264_09635 0.79 -1.1
2,245,530 - CA264_09635 0.79 +0.3
2,245,558 + CA264_09635 0.83 -0.3
2,245,591 + CA264_09635 0.88 -0.4
2,245,596 - CA264_09635 0.89 +0.0
2,245,655 - +0.2
2,245,698 + +0.6
2,245,699 - -0.6
2,245,717 + -0.4
2,245,718 - -0.9
2,245,745 - +0.2
2,245,745 - +0.2
2,245,756 - +1.3
2,245,756 - +0.5
2,245,763 + +0.9
2,245,770 - -0.1
2,245,770 - +0.1
2,245,841 + CA264_09640 0.11 +0.8
2,245,841 + CA264_09640 0.11 -0.0
2,245,841 + CA264_09640 0.11 -0.1
2,245,842 - CA264_09640 0.12 -1.1
2,245,916 + CA264_09640 0.23 -0.7
2,245,936 + CA264_09640 0.26 -0.1
2,245,957 - CA264_09640 0.30 -0.2
2,245,987 + CA264_09640 0.34 -1.1
2,245,987 + CA264_09640 0.34 -0.3
2,246,007 + CA264_09640 0.38 -0.3
2,246,022 + CA264_09640 0.40 +0.2
2,246,024 + CA264_09640 0.40 -1.4
2,246,031 + CA264_09640 0.41 -0.2
2,246,036 - CA264_09640 0.42 +0.3
2,246,047 + CA264_09640 0.44 +3.5
2,246,078 - CA264_09640 0.49 +0.9
2,246,078 - CA264_09640 0.49 -0.3
2,246,078 - CA264_09640 0.49 -0.7
2,246,083 - CA264_09640 0.50 -2.3
2,246,083 - CA264_09640 0.50 +1.5
2,246,102 - CA264_09640 0.53 -0.8
2,246,219 - CA264_09640 0.71 +0.9
2,246,248 - CA264_09640 0.75 -0.4
2,246,255 + CA264_09640 0.77 +0.3
2,246,289 + CA264_09640 0.82 +0.9
2,246,290 - CA264_09640 0.82 -0.4
2,246,365 - -0.7
2,246,384 - +1.8
2,246,420 + +0.4
2,246,495 - -0.3
2,246,516 + +1.3
2,246,608 - CA264_09645 0.29 -0.4
2,246,719 - CA264_09645 0.57 -0.8
2,246,728 - CA264_09645 0.59 +1.5
2,246,729 + CA264_09645 0.60 +0.3
2,246,741 + CA264_09645 0.63 -0.6
2,246,741 + CA264_09645 0.63 -0.6
2,246,847 + CA264_09645 0.89 -0.7
2,246,875 + -1.1
2,246,876 - +1.5
2,246,893 + +0.4
2,246,901 - -0.5
2,246,921 + +0.4
2,246,922 - -0.4
2,246,937 + -0.7
2,246,937 + +0.7
2,247,074 - CA264_09650 0.22 +0.2
2,247,079 + CA264_09650 0.23 -1.4
2,247,109 - CA264_09650 0.30 +0.9
2,247,109 - CA264_09650 0.30 +0.6
2,247,174 - CA264_09650 0.44 -0.5
2,247,174 - CA264_09650 0.44 -0.2
2,247,182 - CA264_09650 0.46 -0.7
2,247,282 + CA264_09650 0.67 +0.5
2,247,366 - CA264_09650 0.85 -0.3
2,247,443 - -0.5
2,247,507 + -0.4
2,247,580 + CA264_09655 0.17 +0.5
2,247,580 + CA264_09655 0.17 -0.4
2,247,580 + CA264_09655 0.17 +0.4
2,247,583 - CA264_09655 0.18 -0.6
2,247,583 - CA264_09655 0.18 -0.7
2,247,583 - CA264_09655 0.18 -1.3
2,247,583 - CA264_09655 0.18 -0.1
2,247,584 + CA264_09655 0.18 +0.5
2,247,584 + CA264_09655 0.18 +0.5
2,247,585 - CA264_09655 0.18 +0.6
2,247,585 - CA264_09655 0.18 -0.4
2,247,592 - CA264_09655 0.20 -1.0
2,247,592 - CA264_09655 0.20 -0.2
2,247,656 + CA264_09655 0.34 -0.5
2,247,666 - CA264_09655 0.37 -1.1
2,247,683 - CA264_09655 0.40 +0.1
2,247,689 + CA264_09655 0.42 -0.2
2,247,690 - CA264_09655 0.42 -0.2
2,247,697 + CA264_09655 0.44 -0.1
2,247,698 - CA264_09655 0.44 +0.0
2,247,720 - CA264_09655 0.49 -2.0
2,247,721 + CA264_09655 0.49 -0.7
2,247,722 - CA264_09655 0.49 -0.4
2,247,722 - CA264_09655 0.49 +0.9
2,247,722 - CA264_09655 0.49 -0.1
2,247,726 + CA264_09655 0.50 +0.9
2,247,726 + CA264_09655 0.50 -0.0
2,247,827 - CA264_09655 0.73 -0.4
2,247,828 + CA264_09655 0.74 -0.4

Or see this region's nucleotide sequence