Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_08585

Experiment: m.b. Dimethyl Sulfoxide 10 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_08580 and CA264_08585 are separated by 50 nucleotidesCA264_08585 and CA264_08590 are separated by 178 nucleotidesCA264_08590 and CA264_08595 are separated by 167 nucleotides CA264_08580: CA264_08580 - K+/H+ antiporter, at 1,992,470 to 1,993,927 _08580 CA264_08585: CA264_08585 - hypothetical protein, at 1,993,978 to 1,994,160 _08585 CA264_08590: CA264_08590 - hypothetical protein, at 1,994,339 to 1,994,731 _08590 CA264_08595: CA264_08595 - penicillin-binding protein, at 1,994,899 to 1,997,364 _08595 Position (kb) 1993 1994 1995Strain fitness (log2 ratio) -3 -2 -1 0 1at 1992.996 kb on - strand, within CA264_08580at 1993.160 kb on + strand, within CA264_08580at 1993.176 kb on + strand, within CA264_08580at 1993.176 kb on + strand, within CA264_08580at 1993.177 kb on - strand, within CA264_08580at 1993.225 kb on + strand, within CA264_08580at 1993.258 kb on - strand, within CA264_08580at 1993.429 kb on - strand, within CA264_08580at 1993.445 kb on - strand, within CA264_08580at 1993.481 kb on - strand, within CA264_08580at 1993.481 kb on - strand, within CA264_08580at 1993.537 kb on + strand, within CA264_08580at 1993.593 kb on + strand, within CA264_08580at 1993.593 kb on + strand, within CA264_08580at 1993.594 kb on - strand, within CA264_08580at 1993.594 kb on - strand, within CA264_08580at 1993.594 kb on - strand, within CA264_08580at 1993.667 kb on + strand, within CA264_08580at 1993.868 kb on + strandat 1993.868 kb on + strandat 1993.868 kb on + strandat 1993.886 kb on + strandat 1993.887 kb on - strandat 1993.899 kb on - strandat 1993.899 kb on - strandat 1993.918 kb on + strandat 1993.919 kb on - strandat 1993.927 kb on + strandat 1993.927 kb on + strandat 1993.948 kb on - strandat 1993.948 kb on - strandat 1993.950 kb on + strandat 1993.975 kb on - strandat 1993.994 kb on - strandat 1994.020 kb on + strand, within CA264_08585at 1994.037 kb on + strand, within CA264_08585at 1994.038 kb on - strand, within CA264_08585at 1994.038 kb on - strand, within CA264_08585at 1994.069 kb on + strand, within CA264_08585at 1994.072 kb on + strand, within CA264_08585at 1994.125 kb on - strand, within CA264_08585at 1994.125 kb on - strand, within CA264_08585at 1994.131 kb on + strand, within CA264_08585at 1994.132 kb on - strand, within CA264_08585at 1994.134 kb on - strand, within CA264_08585at 1994.134 kb on - strand, within CA264_08585at 1994.134 kb on - strand, within CA264_08585at 1994.134 kb on - strand, within CA264_08585at 1994.172 kb on - strandat 1994.223 kb on - strandat 1994.357 kb on + strandat 1994.358 kb on - strandat 1994.358 kb on - strandat 1994.410 kb on + strand, within CA264_08590at 1994.411 kb on - strand, within CA264_08590at 1994.411 kb on - strand, within CA264_08590at 1994.546 kb on + strand, within CA264_08590at 1994.629 kb on - strand, within CA264_08590at 1994.691 kb on + strand, within CA264_08590at 1994.695 kb on + strandat 1994.695 kb on + strandat 1994.716 kb on + strandat 1994.753 kb on + strandat 1994.759 kb on - strandat 1994.908 kb on - strandat 1994.908 kb on - strandat 1994.916 kb on + strandat 1994.916 kb on + strandat 1994.916 kb on + strandat 1994.917 kb on - strandat 1994.921 kb on + strandat 1995.026 kb on - strandat 1995.077 kb on - strandat 1995.100 kb on + strandat 1995.155 kb on - strand, within CA264_08595

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 10 vol%
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1,992,996 - CA264_08580 0.36 -0.5
1,993,160 + CA264_08580 0.47 +0.9
1,993,176 + CA264_08580 0.48 -0.8
1,993,176 + CA264_08580 0.48 -1.5
1,993,177 - CA264_08580 0.48 -0.1
1,993,225 + CA264_08580 0.52 -0.1
1,993,258 - CA264_08580 0.54 -1.1
1,993,429 - CA264_08580 0.66 -0.1
1,993,445 - CA264_08580 0.67 +0.1
1,993,481 - CA264_08580 0.69 +0.3
1,993,481 - CA264_08580 0.69 -0.5
1,993,537 + CA264_08580 0.73 -0.7
1,993,593 + CA264_08580 0.77 +1.1
1,993,593 + CA264_08580 0.77 +0.9
1,993,594 - CA264_08580 0.77 +0.2
1,993,594 - CA264_08580 0.77 +0.4
1,993,594 - CA264_08580 0.77 -1.1
1,993,667 + CA264_08580 0.82 +0.6
1,993,868 + +1.1
1,993,868 + -1.5
1,993,868 + +0.2
1,993,886 + +0.3
1,993,887 - -1.3
1,993,899 - +0.9
1,993,899 - +0.5
1,993,918 + -1.1
1,993,919 - -0.1
1,993,927 + -0.7
1,993,927 + -0.7
1,993,948 - +0.3
1,993,948 - -1.4
1,993,950 + +0.4
1,993,975 - -2.8
1,993,994 - -1.2
1,994,020 + CA264_08585 0.23 -0.6
1,994,037 + CA264_08585 0.32 -0.6
1,994,038 - CA264_08585 0.33 -1.3
1,994,038 - CA264_08585 0.33 -1.0
1,994,069 + CA264_08585 0.50 +0.9
1,994,072 + CA264_08585 0.51 -0.5
1,994,125 - CA264_08585 0.80 -1.2
1,994,125 - CA264_08585 0.80 -1.1
1,994,131 + CA264_08585 0.84 -0.5
1,994,132 - CA264_08585 0.84 -0.9
1,994,134 - CA264_08585 0.85 -1.5
1,994,134 - CA264_08585 0.85 -2.1
1,994,134 - CA264_08585 0.85 +0.1
1,994,134 - CA264_08585 0.85 -1.5
1,994,172 - +0.4
1,994,223 - -0.2
1,994,357 + +0.4
1,994,358 - +0.6
1,994,358 - -0.2
1,994,410 + CA264_08590 0.18 -1.1
1,994,411 - CA264_08590 0.18 +0.3
1,994,411 - CA264_08590 0.18 -1.2
1,994,546 + CA264_08590 0.53 -0.2
1,994,629 - CA264_08590 0.74 +0.6
1,994,691 + CA264_08590 0.90 +1.4
1,994,695 + +0.7
1,994,695 + -0.1
1,994,716 + +0.5
1,994,753 + -0.7
1,994,759 - -1.1
1,994,908 - -0.5
1,994,908 - -1.1
1,994,916 + +0.1
1,994,916 + +0.2
1,994,916 + +0.0
1,994,917 - -0.1
1,994,921 + +0.0
1,995,026 - +0.5
1,995,077 - -0.5
1,995,100 + +1.4
1,995,155 - CA264_08595 0.10 -1.6

Or see this region's nucleotide sequence