Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_05165

Experiment: m.b. Dimethyl Sulfoxide 10 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_05155 and CA264_05160 are separated by 276 nucleotidesCA264_05160 and CA264_05165 are separated by 36 nucleotidesCA264_05165 and CA264_05170 are separated by 67 nucleotidesCA264_05170 and CA264_05175 are separated by 78 nucleotides CA264_05155: CA264_05155 - hypothetical protein, at 1,197,058 to 1,197,909 _05155 CA264_05160: CA264_05160 - hypothetical protein, at 1,198,186 to 1,198,776 _05160 CA264_05165: CA264_05165 - potassium transporter KefB, at 1,198,813 to 1,200,813 _05165 CA264_05170: CA264_05170 - phosphohydrolase, at 1,200,881 to 1,201,534 _05170 CA264_05175: CA264_05175 - hypothetical protein, at 1,201,613 to 1,202,074 _05175 Position (kb) 1198 1199 1200 1201Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1197.818 kb on + strand, within CA264_05155at 1197.818 kb on + strand, within CA264_05155at 1197.850 kb on - strandat 1197.898 kb on + strandat 1197.898 kb on + strandat 1197.937 kb on + strandat 1197.937 kb on + strandat 1197.953 kb on + strandat 1198.123 kb on + strandat 1198.123 kb on + strandat 1198.123 kb on + strandat 1198.123 kb on + strandat 1198.123 kb on + strandat 1198.123 kb on + strandat 1198.123 kb on + strandat 1198.123 kb on + strandat 1198.123 kb on + strandat 1198.124 kb on - strandat 1198.124 kb on - strandat 1198.124 kb on - strandat 1198.124 kb on - strandat 1198.124 kb on - strandat 1198.124 kb on - strandat 1198.127 kb on + strandat 1198.128 kb on - strandat 1198.128 kb on - strandat 1198.143 kb on + strandat 1198.144 kb on - strandat 1198.171 kb on + strandat 1198.171 kb on + strandat 1198.171 kb on + strandat 1198.172 kb on - strandat 1198.172 kb on - strandat 1198.172 kb on - strandat 1198.182 kb on + strandat 1198.183 kb on - strandat 1198.185 kb on + strandat 1198.185 kb on + strandat 1198.186 kb on - strandat 1198.186 kb on - strandat 1198.257 kb on + strand, within CA264_05160at 1198.258 kb on - strand, within CA264_05160at 1198.321 kb on + strand, within CA264_05160at 1198.321 kb on + strand, within CA264_05160at 1198.330 kb on + strand, within CA264_05160at 1198.330 kb on + strand, within CA264_05160at 1198.331 kb on - strand, within CA264_05160at 1198.405 kb on - strand, within CA264_05160at 1198.405 kb on - strand, within CA264_05160at 1198.445 kb on - strand, within CA264_05160at 1198.483 kb on + strand, within CA264_05160at 1198.497 kb on - strand, within CA264_05160at 1198.552 kb on - strand, within CA264_05160at 1198.552 kb on - strand, within CA264_05160at 1198.555 kb on + strand, within CA264_05160at 1198.556 kb on - strand, within CA264_05160at 1198.556 kb on - strand, within CA264_05160at 1198.656 kb on + strand, within CA264_05160at 1198.671 kb on + strand, within CA264_05160at 1198.671 kb on + strand, within CA264_05160at 1198.707 kb on + strand, within CA264_05160at 1198.763 kb on + strandat 1198.774 kb on + strandat 1198.804 kb on - strandat 1198.814 kb on + strandat 1198.814 kb on + strandat 1198.874 kb on + strandat 1198.875 kb on - strandat 1198.894 kb on + strandat 1198.894 kb on + strandat 1198.956 kb on + strandat 1199.101 kb on - strand, within CA264_05165at 1199.120 kb on + strand, within CA264_05165at 1199.120 kb on + strand, within CA264_05165at 1199.155 kb on + strand, within CA264_05165at 1199.155 kb on + strand, within CA264_05165at 1199.155 kb on + strand, within CA264_05165at 1199.155 kb on + strand, within CA264_05165at 1199.155 kb on + strand, within CA264_05165at 1199.156 kb on - strand, within CA264_05165at 1199.156 kb on - strand, within CA264_05165at 1199.156 kb on - strand, within CA264_05165at 1199.177 kb on + strand, within CA264_05165at 1199.177 kb on + strand, within CA264_05165at 1199.177 kb on + strand, within CA264_05165at 1199.178 kb on - strand, within CA264_05165at 1199.178 kb on - strand, within CA264_05165at 1199.255 kb on + strand, within CA264_05165at 1199.295 kb on + strand, within CA264_05165at 1199.295 kb on + strand, within CA264_05165at 1199.296 kb on - strand, within CA264_05165at 1199.296 kb on - strand, within CA264_05165at 1199.298 kb on + strand, within CA264_05165at 1199.299 kb on - strand, within CA264_05165at 1199.390 kb on + strand, within CA264_05165at 1199.391 kb on - strand, within CA264_05165at 1199.391 kb on - strand, within CA264_05165at 1199.442 kb on + strand, within CA264_05165at 1199.496 kb on + strand, within CA264_05165at 1199.497 kb on - strand, within CA264_05165at 1199.497 kb on - strand, within CA264_05165at 1199.502 kb on - strand, within CA264_05165at 1199.547 kb on + strand, within CA264_05165at 1199.547 kb on + strand, within CA264_05165at 1199.563 kb on - strand, within CA264_05165at 1199.650 kb on - strand, within CA264_05165at 1199.667 kb on - strand, within CA264_05165at 1199.741 kb on + strand, within CA264_05165at 1199.742 kb on - strand, within CA264_05165at 1199.794 kb on + strand, within CA264_05165at 1199.795 kb on - strand, within CA264_05165at 1199.890 kb on + strand, within CA264_05165at 1200.047 kb on + strand, within CA264_05165at 1200.064 kb on - strand, within CA264_05165at 1200.139 kb on + strand, within CA264_05165at 1200.139 kb on + strand, within CA264_05165at 1200.153 kb on + strand, within CA264_05165at 1200.154 kb on - strand, within CA264_05165at 1200.157 kb on + strand, within CA264_05165at 1200.157 kb on + strand, within CA264_05165at 1200.157 kb on + strand, within CA264_05165at 1200.159 kb on + strand, within CA264_05165at 1200.159 kb on + strand, within CA264_05165at 1200.232 kb on + strand, within CA264_05165at 1200.330 kb on + strand, within CA264_05165at 1200.330 kb on + strand, within CA264_05165at 1200.331 kb on - strand, within CA264_05165at 1200.462 kb on + strand, within CA264_05165at 1200.643 kb on + strandat 1200.697 kb on + strandat 1200.735 kb on + strandat 1200.735 kb on + strandat 1200.780 kb on + strandat 1200.784 kb on - strandat 1200.784 kb on - strandat 1200.787 kb on + strandat 1200.787 kb on + strandat 1200.787 kb on + strandat 1200.788 kb on - strandat 1200.788 kb on - strandat 1200.788 kb on - strandat 1200.788 kb on - strandat 1200.799 kb on + strandat 1200.800 kb on - strandat 1200.818 kb on + strandat 1200.819 kb on - strandat 1200.819 kb on - strandat 1200.819 kb on - strandat 1200.819 kb on - strandat 1200.819 kb on - strandat 1200.820 kb on + strandat 1200.882 kb on + strandat 1200.906 kb on + strandat 1200.933 kb on + strandat 1200.933 kb on + strandat 1200.934 kb on - strandat 1200.934 kb on - strandat 1200.980 kb on - strand, within CA264_05170at 1200.980 kb on - strand, within CA264_05170at 1201.009 kb on - strand, within CA264_05170at 1201.089 kb on + strand, within CA264_05170at 1201.385 kb on + strand, within CA264_05170at 1201.386 kb on - strand, within CA264_05170at 1201.386 kb on - strand, within CA264_05170at 1201.386 kb on - strand, within CA264_05170at 1201.389 kb on + strand, within CA264_05170at 1201.389 kb on + strand, within CA264_05170at 1201.389 kb on + strand, within CA264_05170at 1201.389 kb on + strand, within CA264_05170at 1201.390 kb on - strand, within CA264_05170at 1201.390 kb on - strand, within CA264_05170at 1201.390 kb on - strand, within CA264_05170at 1201.390 kb on - strand, within CA264_05170at 1201.390 kb on - strand, within CA264_05170at 1201.393 kb on + strand, within CA264_05170at 1201.485 kb on - strandat 1201.493 kb on + strandat 1201.494 kb on - strandat 1201.497 kb on + strandat 1201.553 kb on + strandat 1201.615 kb on - strandat 1201.616 kb on + strandat 1201.698 kb on + strand, within CA264_05175at 1201.698 kb on + strand, within CA264_05175at 1201.704 kb on - strand, within CA264_05175at 1201.704 kb on - strand, within CA264_05175at 1201.779 kb on - strand, within CA264_05175

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 10 vol%
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1,197,818 + CA264_05155 0.89 -0.2
1,197,818 + CA264_05155 0.89 -0.3
1,197,850 - -0.8
1,197,898 + +0.5
1,197,898 + -0.4
1,197,937 + +0.1
1,197,937 + +0.2
1,197,953 + +1.3
1,198,123 + -0.1
1,198,123 + +0.6
1,198,123 + +0.5
1,198,123 + +0.6
1,198,123 + +0.5
1,198,123 + -0.2
1,198,123 + -0.3
1,198,123 + +2.5
1,198,123 + -0.1
1,198,124 - -0.5
1,198,124 - -0.9
1,198,124 - -1.8
1,198,124 - +0.3
1,198,124 - +0.4
1,198,124 - -0.5
1,198,127 + -0.0
1,198,128 - -0.4
1,198,128 - +0.2
1,198,143 + +1.5
1,198,144 - +2.2
1,198,171 + +0.0
1,198,171 + +1.7
1,198,171 + -0.2
1,198,172 - -0.1
1,198,172 - +1.0
1,198,172 - -0.3
1,198,182 + -1.2
1,198,183 - -0.7
1,198,185 + +0.1
1,198,185 + +0.1
1,198,186 - -0.5
1,198,186 - -0.5
1,198,257 + CA264_05160 0.12 -0.3
1,198,258 - CA264_05160 0.12 -0.8
1,198,321 + CA264_05160 0.23 +1.1
1,198,321 + CA264_05160 0.23 +0.5
1,198,330 + CA264_05160 0.24 +0.0
1,198,330 + CA264_05160 0.24 -0.1
1,198,331 - CA264_05160 0.25 +1.3
1,198,405 - CA264_05160 0.37 +0.6
1,198,405 - CA264_05160 0.37 +0.6
1,198,445 - CA264_05160 0.44 -0.0
1,198,483 + CA264_05160 0.50 +0.8
1,198,497 - CA264_05160 0.53 -1.4
1,198,552 - CA264_05160 0.62 -0.9
1,198,552 - CA264_05160 0.62 +0.1
1,198,555 + CA264_05160 0.62 -0.4
1,198,556 - CA264_05160 0.63 -1.0
1,198,556 - CA264_05160 0.63 -0.5
1,198,656 + CA264_05160 0.80 -0.1
1,198,671 + CA264_05160 0.82 +0.1
1,198,671 + CA264_05160 0.82 +0.3
1,198,707 + CA264_05160 0.88 -0.7
1,198,763 + -1.4
1,198,774 + +0.8
1,198,804 - -0.5
1,198,814 + -0.3
1,198,814 + +1.5
1,198,874 + +0.9
1,198,875 - +1.2
1,198,894 + +0.0
1,198,894 + -2.4
1,198,956 + -0.7
1,199,101 - CA264_05165 0.14 -0.1
1,199,120 + CA264_05165 0.15 +0.9
1,199,120 + CA264_05165 0.15 +1.1
1,199,155 + CA264_05165 0.17 -0.2
1,199,155 + CA264_05165 0.17 +0.1
1,199,155 + CA264_05165 0.17 +0.4
1,199,155 + CA264_05165 0.17 -0.5
1,199,155 + CA264_05165 0.17 +0.1
1,199,156 - CA264_05165 0.17 -0.1
1,199,156 - CA264_05165 0.17 +0.1
1,199,156 - CA264_05165 0.17 -0.2
1,199,177 + CA264_05165 0.18 +2.1
1,199,177 + CA264_05165 0.18 +0.6
1,199,177 + CA264_05165 0.18 +0.4
1,199,178 - CA264_05165 0.18 +0.1
1,199,178 - CA264_05165 0.18 -0.3
1,199,255 + CA264_05165 0.22 -0.1
1,199,295 + CA264_05165 0.24 +0.4
1,199,295 + CA264_05165 0.24 +0.1
1,199,296 - CA264_05165 0.24 +0.2
1,199,296 - CA264_05165 0.24 +0.4
1,199,298 + CA264_05165 0.24 +0.1
1,199,299 - CA264_05165 0.24 -0.3
1,199,390 + CA264_05165 0.29 -0.3
1,199,391 - CA264_05165 0.29 -0.4
1,199,391 - CA264_05165 0.29 +0.5
1,199,442 + CA264_05165 0.31 +2.1
1,199,496 + CA264_05165 0.34 -0.3
1,199,497 - CA264_05165 0.34 +2.9
1,199,497 - CA264_05165 0.34 +0.5
1,199,502 - CA264_05165 0.34 +1.1
1,199,547 + CA264_05165 0.37 -0.9
1,199,547 + CA264_05165 0.37 -0.9
1,199,563 - CA264_05165 0.37 -0.1
1,199,650 - CA264_05165 0.42 -0.7
1,199,667 - CA264_05165 0.43 +1.5
1,199,741 + CA264_05165 0.46 +0.2
1,199,742 - CA264_05165 0.46 +0.8
1,199,794 + CA264_05165 0.49 +1.5
1,199,795 - CA264_05165 0.49 +0.9
1,199,890 + CA264_05165 0.54 -0.8
1,200,047 + CA264_05165 0.62 +0.1
1,200,064 - CA264_05165 0.63 +0.4
1,200,139 + CA264_05165 0.66 +1.9
1,200,139 + CA264_05165 0.66 +0.5
1,200,153 + CA264_05165 0.67 -1.4
1,200,154 - CA264_05165 0.67 +0.4
1,200,157 + CA264_05165 0.67 -0.1
1,200,157 + CA264_05165 0.67 +0.8
1,200,157 + CA264_05165 0.67 -0.6
1,200,159 + CA264_05165 0.67 +0.1
1,200,159 + CA264_05165 0.67 +1.4
1,200,232 + CA264_05165 0.71 -0.3
1,200,330 + CA264_05165 0.76 -2.3
1,200,330 + CA264_05165 0.76 -0.1
1,200,331 - CA264_05165 0.76 -0.4
1,200,462 + CA264_05165 0.82 +1.4
1,200,643 + -0.7
1,200,697 + +1.9
1,200,735 + +0.2
1,200,735 + -0.7
1,200,780 + -1.0
1,200,784 - +0.1
1,200,784 - +0.3
1,200,787 + +0.9
1,200,787 + -1.0
1,200,787 + -0.4
1,200,788 - +0.1
1,200,788 - -0.1
1,200,788 - +0.1
1,200,788 - +0.7
1,200,799 + -0.1
1,200,800 - +0.6
1,200,818 + +0.2
1,200,819 - -0.4
1,200,819 - +0.1
1,200,819 - +0.6
1,200,819 - -0.4
1,200,819 - +0.4
1,200,820 + -0.5
1,200,882 + -2.4
1,200,906 + +0.3
1,200,933 + -0.2
1,200,933 + -0.1
1,200,934 - +0.3
1,200,934 - -0.8
1,200,980 - CA264_05170 0.15 +0.2
1,200,980 - CA264_05170 0.15 +0.5
1,201,009 - CA264_05170 0.20 +0.4
1,201,089 + CA264_05170 0.32 -0.8
1,201,385 + CA264_05170 0.77 +0.6
1,201,386 - CA264_05170 0.77 +0.0
1,201,386 - CA264_05170 0.77 +2.5
1,201,386 - CA264_05170 0.77 -0.4
1,201,389 + CA264_05170 0.78 -0.4
1,201,389 + CA264_05170 0.78 +1.2
1,201,389 + CA264_05170 0.78 -0.4
1,201,389 + CA264_05170 0.78 -0.4
1,201,390 - CA264_05170 0.78 +0.3
1,201,390 - CA264_05170 0.78 -0.3
1,201,390 - CA264_05170 0.78 +0.5
1,201,390 - CA264_05170 0.78 -0.1
1,201,390 - CA264_05170 0.78 -0.3
1,201,393 + CA264_05170 0.78 -1.6
1,201,485 - +1.9
1,201,493 + -0.3
1,201,494 - +0.2
1,201,497 + -0.2
1,201,553 + -0.8
1,201,615 - +0.2
1,201,616 + -0.3
1,201,698 + CA264_05175 0.18 +0.8
1,201,698 + CA264_05175 0.18 +0.2
1,201,704 - CA264_05175 0.20 +0.0
1,201,704 - CA264_05175 0.20 -0.7
1,201,779 - CA264_05175 0.36 -1.1

Or see this region's nucleotide sequence